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9087 Publications


2011 | Journal Article | IST-REx-ID: 3370 | OA
Consequences of different null models on the tree shape bias of supertree methods
A. Kupczok, Systematic Biology 60 (2011) 218–225.
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2011 | Journal Article | IST-REx-ID: 3369
The multiple faces of RIM
A. Pernia-Andrade, P.M. Jonas, Neuron 69 (2011) 185–187.
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2011 | Journal Article | IST-REx-ID: 3396 | OA
Defective neuroepithelial cell cohesion affects tangential branchiomotor neuron migration in the zebrafish neural tube
P. Stockinger, C.-P.J. Heisenberg, J.-L. Maître, Development 138 (2011) 4673–4683.
[Published Version] View | Files available | DOI
 

2011 | Journal Article | IST-REx-ID: 3394 | OA
Genetic drift widens the expected cline but narrows the expected cline width
J. Polechova, N.H. Barton, Genetics 189 (2011) 227–235.
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2011 | Journal Article | IST-REx-ID: 3390 | OA
The relation between reproductive value and genetic contribution
N.H. Barton, A. Etheridge, Genetics 188 (2011) 953–973.
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2011 | Journal Article | IST-REx-ID: 3391 | OA
The contribution of statistical physics to evolutionary biology
H. de Vladar, N.H. Barton, Trends in Ecology and Evolution 26 (2011) 424–432.
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2011 | Journal Article | IST-REx-ID: 3397 | OA
The role of adhesion energy in controlling cell-cell contacts
J.-L. Maître, C.-P.J. Heisenberg, Current Opinion in Cell Biology 23 (2011) 508–514.
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2011 | Journal Article | IST-REx-ID: 3405 | OA
Modern ionotropic glutamate receptor with a K+ selectivity signature sequence
H.L. Janovjak, G. Sandoz, E. Isacoff, Nature Communications 2 (2011) 1–6.
[Submitted Version] View | Files available | DOI
 

2011 | Journal Article | IST-REx-ID: 341
Morphology evolution of Cu2−xS nanoparticles: from spheres to dodecahedrons
W. Li, A. Shavel, R. Guzman, J. Rubio Garcia, C. Flox, J. Fan, D. Cadavid, M. Ibáñez, J. Arbiol, J. Morante, A. Cabot, Chemical Communications 47 (2011) 10332–10334.
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2011 | Journal Article | IST-REx-ID: 3429
Oct4 kinetics predict cell lineage patterning in the early mammalian embryo
N. Plachta, M.T. Bollenbach, S. Pease, S. Fraser, P. Pantazis, Nature Cell Biology 13 (2011) 117–123.
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2011 | Journal Article | IST-REx-ID: 3505 | OA
In vitro analysis of chemotactic leukocyte migration in 3D environments
M.K. Sixt, T. Lämmermann, Cell Migration 769 (2011) 149–165.
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2011 | Journal Article | IST-REx-ID: 3784 | OA
Scyllarus arctus (Crustacea: Decapoda: Scyllaridae) final stage phyllosoma identified by DNA analysis, with morphological description
F. Palero, G. Guerao, P. Clark, P. Abello, Journal of the Marine Biological Association of the United Kingdom 91 (2011) 485–492.
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2011 | Journal Article | IST-REx-ID: 3781
The difference in length of curves in R^n
B.T. Fasy, Acta Sci. Math. (Szeged) 77 (2011) 359–367.
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2011 | Book Chapter | IST-REx-ID: 3796 | OA
Covering and packing with spheres by diagonal distortion in R^n
H. Edelsbrunner, M. Kerber, in:, C. Calude, G. Rozenberg, A. Salomaa (Eds.), Rainbow of Computer Science, Springer, 2011, pp. 20–35.
[Submitted Version] View | Files available | DOI
 

2011 | Journal Article | IST-REx-ID: 3381 | OA
Formalisms for specifying Markovian population models
T.A. Henzinger, B. Jobstmann, V. Wolf, IJFCS: International Journal of Foundations of Computer Science 22 (2011) 823–841.
[Submitted Version] View | Files available | DOI
 

2011 | Journal Article | IST-REx-ID: 386 | OA
STM imaging of a bound state along a step on the surface of the topological insulator Bi2Te3
Z. Alpichshev, J.G. Analytis, J.H. Chu, I.R. Fisher, A. Kapitulnik, Physical Review B - Condensed Matter and Materials Physics 84 (2011).
[Preprint] View | DOI | Download Preprint (ext.) | arXiv
 

2011 | Journal Article | IST-REx-ID: 3315 | OA
Timed parity games: Complexity and robustness
K. Chatterjee, T.A. Henzinger, V. Prabhu, Logical Methods in Computer Science 7 (2011).
[Published Version] View | Files available | DOI
 

2011 | Journal Article | IST-REx-ID: 3965
Computing elevation maxima by searching the Gauss sphere
B. Wang, H. Edelsbrunner, D. Morozov, Journal of Experimental Algorithmics 16 (2011) 1–13.
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2011 | Journal Article | IST-REx-ID: 3086
Polar localized NPH3-like proteins regulate polarity and endocytosis of PIN-FORMED auxin efflux carriers
M. Furutani, N. Sakamoto, S. Yoshida, T. Kajiwara, H. Robert, J. Friml, M. Tasaka, Development 138 (2011) 2069–2078.
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2011 | Journal Article | IST-REx-ID: 3087
Clathrin mediates endocytosis and polar distribution of PIN auxin transporters in Arabidopsis
S. Kitakura, S. Vanneste, S. Robert, C. Löfke, T. Teichmann, H. Tanaka, J. Friml, Plant Cell 23 (2011) 1920–1931.
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2011 | Journal Article | IST-REx-ID: 3085
Light-mediated polarization of the PIN3 auxin transporter for the phototropic response in Arabidopsis
Z. Ding, C. Galván Ampudia, E. Demarsy, Ł. Łangowski, J. Kleine Vehn, Y. Fan, M. Morita, M. Tasaka, C. Fankhauser, R. Offringa, J. Friml, Nature Cell Biology 13 (2011) 447–453.
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2011 | Journal Article | IST-REx-ID: 3084
PIN polarity maintenance by the cell wall in Arabidopsis
E. Feraru, M. Feraru, J. Kleine Vehn, A. Martinière, G. Mouille, S. Vanneste, S. Vernhettes, J. Runions, J. Friml, Current Biology 21 (2011) 338–343.
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2011 | Journal Article | IST-REx-ID: 3082
Competitive canalization of PIN dependent auxin flow from axillary buds controls pea bud outgrowth
J. Balla, P. Kalousek, V. Reinöhl, J. Friml, S. Procházka, Plant Journal 65 (2011) 571–577.
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2011 | Journal Article | IST-REx-ID: 3083
ARF1 localizes to the golgi and the trans Golgi network
D. Robinson, D. Scheuring, S. Naramoto, J. Friml, Plant Cell 23 (2011) 846–849.
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2011 | Journal Article | IST-REx-ID: 3101 | OA
The AP 3 adaptor complex is required for vacuolar function in Arabidopsis
M. Zwiewka, E. Feraru, B. Möller, I. Hwang, M. Feraru, J. Kleine Vehn, D. Weijers, J. Friml, Cell Research 21 (2011) 1711–1722.
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2011 | Journal Article | IST-REx-ID: 3098
Recycling, clustering and endocytosis jointly maintain PIN auxin carrier polarity at the plasma membrane
J. Kleine Vehn, K.T. Wabnik, A. Martinière, Ł. Łangowski, K. Willig, S. Naramoto, J. Leitner, H. Tanaka, S. Jakobs, S. Robert, C. Luschnig, W. Govaerts, S. Hell, J. Runions, J. Friml, Molecular Systems Biology 7 (2011).
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2011 | Journal Article | IST-REx-ID: 3100 | OA
Developmental regulation of CYCA2s contributes to tissue-specific proliferation in Arabidopsis
S. Vanneste, F. Coppens, E. Lee, T. Donner, Z. Xie, G. Van Isterdael, S. Dhondt, F. De Winter, B. De Rybel, M. Vuylsteke, L. De Veylder, J. Friml, D. Inzé, E. Grotewold, E. Scarpella, F. Sack, G. Beemster, T. Beeckman, EMBO Journal 30 (2011) 3430–3441.
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2011 | Journal Article | IST-REx-ID: 3099
Clusters of bioactive compounds target dynamic endomembrane networks in vivo
G. Drakakaki, S. Robert, A. Szatmári, M. Brown, S. Nagawa, D. Van Damme, M. Leonard, Z. Yang, T. Girke, S. Schmid, E. Russinova, J. Friml, N. Raikhel, G. Hicks, PNAS 108 (2011) 17850–17855.
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2011 | Journal Article | IST-REx-ID: 3095
Auxin minimum defines a developmental window for lateral root initiation
J. Dubrovsky, S. Napsucialy Mendivil, J. Duclercq, Y. Cheng, S. Shishkova, M. Ivanchenko, J. Friml, A. Murphy, E. Benková, New Phytologist 191 (2011) 970–983.
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2011 | Journal Article | IST-REx-ID: 3097
Cytokinin modulates endocytic trafficking of PIN1 auxin efflux carrier to control plant organogenesis
P. Marhavý, A. Bielach, L. Abas, A. Abuzeineh, J. Duclercq, H. Tanaka, M. Pařezová, J. Petrášek, J. Friml, J. Kleine Vehn, E. Benková, Developmental Cell 21 (2011) 796–804.
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2011 | Journal Article | IST-REx-ID: 3096
Prototype cell-to-cell auxin transport mechanism by intracellular auxin compartmentalization
K.T. Wabnik, J. Kleine Vehn, W. Govaerts, J. Friml, Trends in Plant Science 16 (2011) 468–475.
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2011 | Journal Article | IST-REx-ID: 3138
Relationships between hippocampal sharp waves ripples and fast gamma oscillation Influence of dentate and entorhinal cortical activity
D. Sullivan, J.L. Csicsvari, K. Mizuseki, S. Montgomery, K. Diba, G. Buzsáki, Journal of Neuroscience 31 (2011) 8605–8616.
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2011 | Journal Article | IST-REx-ID: 3145
Site specific integrase mediated transgenesis in mice via pronuclear injection
B. Tasic, S. Hippenmeyer, C. Wang, M. Gamboa, H. Zong, Y. Chen Tsai, L. Luo, PNAS 108 (2011) 7902–7907.
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2011 | Journal Article | IST-REx-ID: 3154
Peroxiredoxin stabilization of DE-cadherin promotes primordial germ cell adhesion
M. Degennaro, T. Hurd, D.E. Siekhaus, B. Biteau, H. Jasper, R. Lehmann, Developmental Cell 20 (2011) 233–243.
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2011 | Conference Paper | IST-REx-ID: 3239
Tamper proof circuits How to trade leakage for tamper resilience
S. Faust, K.Z. Pietrzak, D. Venturi, in:, Springer, 2011, pp. 391–402.
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2011 | Conference Paper | IST-REx-ID: 3236
Parallel repetition for leakage resilience amplification revisited
A. Jain, K.Z. Pietrzak, in:, Springer, 2011, pp. 58–69.
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2011 | Journal Article | IST-REx-ID: 3276 | OA
Fast, scalable, Bayesian spike identification for multi-electrode arrays
J. Prentice, J. Homann, K. Simmons, G. Tkačik, V. Balasubramanian, P. Nelson, PLoS One 6 (2011).
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2011 | Book Chapter | IST-REx-ID: 3271
Efficient computation of persistent homology for cubical data
H. Wagner, C. Chen, E. Vuçini, in:, R. Peikert, H. Hauser, H. Carr, R. Fuchs (Eds.), Topological Methods in Data Analysis and Visualization II, Springer, 2011, pp. 91–106.
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2011 | Journal Article | IST-REx-ID: 3278
A phylogenetic revision of the Glaucopsyche section (Lepidoptera: Lycaenidae), with special focus on the Phengaris-Maculinea clade
R. Vila, N. Pierce, D. Nash, L.V. Ugelvig, Molecular Phylogenetics and Evolution 61 (2011) 237–243.
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2011 | Conference Paper | IST-REx-ID: 3270
Persistent homology computation with a twist
C. Chen, M. Kerber, in:, TU Dortmund, 2011, pp. 197–200.
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2011 | Conference Paper | IST-REx-ID: 3298 | OA
Hybrid smoothed particle hydrodynamics
K. Raveendran, C. Wojtan, G. Turk, in:, S. Spencer (Ed.), ACM, 2011, pp. 33–42.
[Submitted Version] View | Files available | DOI
 

2011 | Conference Paper | IST-REx-ID: 3297 | OA
Liquid simulation with mesh-based surface tracking
C. Wojtan, M. Müller Fischer, T. Brochu, in:, ACM, 2011.
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2011 | Journal Article | IST-REx-ID: 3290 | OA
A general method for calculating likelihoods under the coalescent process
K. Lohse, R. Harrison, N.H. Barton, Genetics 189 (2011) 977–987.
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2011 | Conference Poster | IST-REx-ID: 3312 | OA
Detailed reconstruction of 3D plant root shape
Y. Zheng, S. Gu, H. Edelsbrunner, C. Tomasi, P. Benfey, Detailed Reconstruction of 3D Plant Root Shape, IEEE, 2011.
[Submitted Version] View | Files available | DOI
 

2011 | Conference Paper | IST-REx-ID: 3313 | OA
Diffusion runs low on persistence fast
C. Chen, H. Edelsbrunner, in:, Proceedings of the IEEE International Conference on Computer Vision, IEEE, 2011.
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2011 | Book Chapter | IST-REx-ID: 3311 | OA
Alpha shapes - a survey
H. Edelsbrunner, in:, R. van de Weygaert, G. Vegter, J. Ritzerveld, V. Icke (Eds.), Tessellations in the Sciences: Virtues, Techniques and Applications of Geometric Tilings, Springer, n.d.
[Submitted Version] View | Files available
 

2011 | Conference Paper | IST-REx-ID: 3326 | OA
What’s decidable about weighted automata
S. Almagor, U. Boker, O. Kupferman, in:, Springer, 2011, pp. 482–491.
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2011 | Conference Paper | IST-REx-ID: 3325
Streaming transducers for algorithmic verification of single pass list processing programs
R. Alur, P. Cerny, in:, ACM, 2011, pp. 599–610.
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2011 | Conference Paper | IST-REx-ID: 3324 | OA
Decision procedures for automating termination proofs
R. Piskac, T. Wies, in:, R. Jhala, D. Schmidt (Eds.), Springer, 2011, pp. 371–386.
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2011 | Conference Paper | IST-REx-ID: 3327
Co-Büching them all
U. Boker, O. Kupferman, in:, M. Hofmann (Ed.), Springer, 2011, pp. 184–198.
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