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6494 Publications


2001 | Journal Article | IST-REx-ID: 867
Kondrashov, Fyodor, and Eugene Koonin. “Origin of Alternative Splicing by Tandem Exon Duplication.” Human Molecular Genetics. Oxford University Press, 2001. https://doi.org/10.1093/hmg/10.23.2661.
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2001 | Journal Article | IST-REx-ID: 874
Kondrashov, Fyodor, and Alexey Kondrashov. “Multidimensional Epistasis and the Disadvantage of Sex.” PNAS. National Academy of Sciences, 2001. https://doi.org/10.1073/pnas.211214298.
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2001 | Conference Paper | IST-REx-ID: 4600
Alur, Rajeev, Luca De Alfaro, Radu Grosu, Thomas A Henzinger, Myong Kang, Christoph Kirsch, Ritankar Majumdar, Freddy Mang, and Bow Wang. “JMocha: A Model-Checking Tool That Exploits Design Structure,” 835–36. IEEE, 2001. https://doi.org/10.1109/ICSE.2001.919196.
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2001 | Conference Paper | IST-REx-ID: 4622
De Alfaro, Luca, and Thomas A Henzinger. “Interface Automata,” 109–20. ACM, 2001. https://doi.org/10.1145/503209.503226.
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2001 | Conference Paper | IST-REx-ID: 4623
De Alfaro, Luca, and Thomas A Henzinger. “Interface Theories for Component-Based Design,” 2211:148–65. ACM, 2001. https://doi.org/10.1007/3-540-45449-7_11.
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2001 | Conference Paper | IST-REx-ID: 4632
De Alfaro, Luca, Thomas A Henzinger, and Ranjit Jhala. “Compositional Methods for Probabilistic Systems,” 2154:351–65. Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2001. https://doi.org/10.1007/3-540-44685-0_24.
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2001 | Conference Paper | IST-REx-ID: 4633
De Alfaro, Luca, Thomas A Henzinger, and Ritankar Majumdar. “Symbolic Algorithms for Infinite-State Games,” 2154:536–50. Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2001. https://doi.org/10.1007/3-540-44685-0_36.
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2001 | Conference Paper | IST-REx-ID: 4634
De Alfaro, Luca, Thomas A Henzinger, and Freddy Mang. “The Control of Synchronous Systems, Part II,” 2154:566–81. Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2001. https://doi.org/10.1007/3-540-44685-0_38.
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2001 | Conference Paper | IST-REx-ID: 4635
De Alfaro, Luca, Thomas A Henzinger, and Freddy Mang. “MCWEB: A Model-Checking Tool for Web-Site Debugging,” 86–87. ACM, 2001.
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2001 | Conference Paper | IST-REx-ID: 4636
De Alfaro, Luca, Thomas A Henzinger, and Ritankar Majumdar. “From Verification to Control: Dynamic Programs for Omega-Regular Objectives,” 279–90. IEEE, 2001. https://doi.org/10.1109/LICS.2001.932504.
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2001 | Journal Article | IST-REx-ID: 1452 | OA
Hausel, Tamás, and Michael Thaddeus. “Examples of Mirror Partners Arising from Integrable Systems.” Comptes Rendus de l’Academie Des Sciences - Series I: Mathematics. Elsevier, 2001. https://doi.org/10.1016/S0764-4442(01)02057-2.
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2001 | Journal Article | IST-REx-ID: 1453 | OA
Etesi, Gábor, and Tamás Hausel. “Geometric Construction of New Yang-Mills Instantons over Taub-NUT Space.” Physics Letters, Section B: Nuclear, Elementary Particle and High-Energy Physics. Elsevier, 2001. https://doi.org/10.1016/S0370-2693(01)00821-8.
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2001 | Journal Article | IST-REx-ID: 1454 | OA
Etesi, Gábor, and Tamás Hausel. “Geometric Interpretation of Schwarzschild Instantons.” Journal of Geometry and Physics. Elsevier, 2001. https://doi.org/10.1016/S0393-0440(00)00040-1.
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2001 | Journal Article | IST-REx-ID: 888
Jordan, Ingo, Fyodor Kondrashov, Igor Rogozin, Roman Tatusov, Yuri Wolf, and Eugene Koonin. “Constant Relative Rate of Protein Evolution and Detection of Functional Diversification among Bacterial, Archaeal and Eukaryotic Proteins .” Genome Biology. BioMed Central, 2001. https://doi.org/10.1186/gb-2001-2-12-research0053.
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2001 | Journal Article | IST-REx-ID: 3927
Wolf, Dominik, Rupert Hallmann, Gabriele Sass, Michael K Sixt, Sabine Küsters, Bastian Fregien, Christian Trautwein, and Gisa Tiegs. “TNF-α-Induced Expression of Adhesion Molecules in the Liver Is under the Control of TNFR1--Relevance for Concanavalin A-Induced Hepatitis.” Journal of Immunology. American Association of Immunologists, 2001.
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2001 | Journal Article | IST-REx-ID: 3928
Sixt, Michael K, Rupert Hallmann, Olaf Wendler, Karin Scharffetter Kochanek, and Lydia Sorokin. “Cell Adhesion and Migration Properties of Β2-Integrin Negative Polymorphonuclear Granulocytes on Defined Extracellular Matrix Molecules. Relevance for Leukocyte Extravasation.” Journal of Biological Chemistry. American Society for Biochemistry and Molecular Biology, 2001. https://doi.org/10.1074/jbc.M010898200.
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2001 | Journal Article | IST-REx-ID: 3930
Sixt, Michael K, Britta Engelhardt, Friederike Pausch, Rupert Hallmann, Olaf Wendler, and Lydia Sorokin. “Endothelial Cell Laminin Isoforms, Laminins 8 and 10, Play Decisive Roles in T Cell Recruitment across the Blood-Brain Barrier in Experimental Autoimmune Encephalomyelitis.” Journal of Cell Biology. Rockefeller University Press, 2001. https://doi.org/10.1083/jcb.153.5.933 .
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2001 | Journal Article | IST-REx-ID: 4001
Cheng, Ho, Herbert Edelsbrunner, and Ping Fu. “Shape Space from Deformation.” Computational Geometry: Theory and Applications. Elsevier, 2001. https://doi.org/10.1016/S0925-7721(01)00021-9.
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2001 | Journal Article | IST-REx-ID: 4002
Cheng, Siu, Herbert Edelsbrunner, Ping Fu, and Ka Lam. “Design and Analysis of Planar Shape Deformation.” Computational Geometry: Theory and Applications. Elsevier, 2001. https://doi.org/10.1016/S0925-7721(01)00020-7.
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2001 | Conference Paper | IST-REx-ID: 4005
Cheng, Ho, Tamal Dey, Herbert Edelsbrunner, and John Sullivan. “Dynamic Skin Triangulation,” 47–56. SIAM, 2001.
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2001 | Journal Article | IST-REx-ID: 4006
Edelsbrunner, Herbert. “180 Wrapped Tubes.” Journal of Universal Computer Science. Springer, 2001. https://doi.org/10.3217/jucs-007-05-0379.
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2001 | Journal Article | IST-REx-ID: 4007
Cheng, Ho, Tamal Dey, Herbert Edelsbrunner, and John Sullivan. “Dynamic Skin Triangulation.” Discrete & Computational Geometry. Springer, 2001. https://doi.org/10.1007/s00454-001-0007-1.
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2001 | Journal Article | IST-REx-ID: 4200
Heisenberg, Carl-Philipp J, Corinne Houart, Masaya Take Uchi, Gerd Rauch, Neville Young, Pedro Coutinho, Ichiro Masai, et al. “A Mutation in the Gsk3-Binding Domain of Zebrafish Masterblind/Axin1 Leads to a Fate Transformation of Telencephalon and Eyes to Diencephalon.” Genes and Development. Cold Spring Harbor Laboratory Press, 2001. https://doi.org/10.1101/gad.194301.
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2001 | Journal Article | IST-REx-ID: 4229
Bollback, Jonathan P, and John Huelsenbeck. “Phylogeny, Genome Evolution, and Host Specificity of Single-Stranded RNA Bacteriophage (Family Leviviridae).” Journal of Molecular Evolution. Springer, 2001. https://doi.org/10.1007/s002390010140.
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2001 | Journal Article | IST-REx-ID: 4264
Turelli, Michael, Nicholas H Barton, and Jerry Coyne. “Theory and Speciation.” Trends in Ecology and Evolution. Cell Press, 2001. https://doi.org/10.1016/S0169-5347(01)02177-2.
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2001 | Journal Article | IST-REx-ID: 4265
Otto, Sarah, and Nicholas H Barton. “Selection for Recombination in Small Populations.” Evolution; International Journal of Organic Evolution. Wiley-Blackwell, 2001. https://doi.org/10.1111/j.0014-3820.2001.tb01310.x.
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2001 | Journal Article | IST-REx-ID: 4266
Barton, Nicholas H. “The Role of Hybridisation in Evolution.” Molecular Ecology. Wiley-Blackwell, 2001. https://doi.org/10.1046/j.1365-294X.2001.01216.x.
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2001 | Book Chapter | IST-REx-ID: 4267
Barton, Nicholas H. “Adaptation at the Edge of a Species’ Range.” In Integrating Ecology and Evolution in a Spatial Context, 365–92. Cambridge University Press, 2001.
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2001 | Book Chapter | IST-REx-ID: 4278
Barton, Nicholas H. “The Evolutionary Consequences of Gene Flow and Local Adaptation: Future Approaches.” In Dispersal. Oxford University Press, 2001.
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2001 | Conference (Editor) | IST-REx-ID: 4449
Henzinger, Thomas A, and Christoph Kirsch. EMSOFT: Embedded Software. EMSOFT: Embedded Software . Vol. 2211. ACM, 2001. https://doi.org/10.1007/3-540-45449-7.
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2001 | Conference Paper | IST-REx-ID: 4475
Henzinger, Thomas A, Joerg Preussig, and Howard Wong Toi. “Some Lessons from the HYTECH Experience,” 3:2887–92. IEEE, 2001. https://doi.org/10.1109/.2001.980714.
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2001 | Conference Paper | IST-REx-ID: 4477
Henzinger, Thomas A, Marius Minea, and Vinayak Prabhu. “Assume-Guarantee Reasoning for Hierarchical Hybrid Systems,” 2034:275–90. Springer, 2001. https://doi.org/10.1007/3-540-45351-2_24.
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2001 | Conference Paper | IST-REx-ID: 4478
Henzinger, Thomas A, Benjamin Horowitz, and Christoph Kirsch. “Embedded Control Systems Development with Giotto,” 64–72. ACM, 2001. https://doi.org/10.1145/384197.384208.
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2001 | Conference Paper | IST-REx-ID: 4479
Henzinger, Thomas A, Benjamin Horowitz, and Christoph Kirsch. “Giotto: A Time-Triggered Language for Embedded Programming,” 2211:166–84. ACM, 2001. https://doi.org/1303.
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2001 | Conference Paper | IST-REx-ID: 4564
Brown, Timothy, Alessandro Pasetti, Wolfgang Pree, Thomas A Henzinger, and Christoph Kirsch. “A Reusable and Platform-Independent Framework for Distributed Control Systems,” 1–11. IEEE, 2001. https://doi.org/10.1109/DASC.2001.964169.
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2001 | Journal Article | IST-REx-ID: 4599
Alur, Rajeev, Robert Brayton, Thomas A Henzinger, Shaz Qadeer, and Sriram Rajamani. “Partial-Order Reduction in Symbolic State-Space Exploration.” Formal Methods in System Design. Springer, 2001. https://doi.org/10.1023/A:1008767206905.
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2001 | Journal Article | IST-REx-ID: 2981 | OA
Molendijk, Arthur, Friedrich Bischoff, Chadalavada Rajendrakumar, Jiří Friml, Markus Braun, Simon Gilroy, and Klaus Palme. “Arabidopsis Thaliana Rop GTPases Are Localized to Tips of Root Hairs and Control Polar Growth.” EMBO Journal. Wiley-Blackwell, 2001. https://doi.org/10.1093/emboj/20.11.2779.
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2001 | Journal Article | IST-REx-ID: 2982
Gil, Pedro, Elizabeth Dewey, Jiří Friml, Yunde Zhao, Kimberley Snowden, Jo Putterill, Klaus Palme, Mark Estelle, and Joanne Chory. “BIG: A Calossin-like Protein Required for Polar Auxin Transport in Arabidopsis.” Genes and Development. Cold Spring Harbor Laboratory Press, 2001. https://doi.org/10.1101/gad.905201.
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2001 | Journal Article | IST-REx-ID: 2983
Geldner, Niko, Jiří Friml, York Stierhof, Gerd Jürgens, and Klaus Palme. “Auxin Transport Inhibitors Block PIN1 Cycling and Vesicle Trafficking.” Nature. Nature Publishing Group, 2001. https://doi.org/10.1038/35096571.
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2001 | Journal Article | IST-REx-ID: 2984
Swarup, Ranjan, Jiří Friml, Alan Marchant, Karin Ljung, Göran Sandberg, Klaus Palme, and Malcolm Bennett. “Localization of the Auxin Permease AUX1 Suggests Two Functionally Distinct Hormone Transport Pathways Operate in the Arabidopsis Root Apex.” Genes and Development. Cold Spring Harbor Laboratory Press, 2001. https://doi.org/10.1101/gad.210501.
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2001 | Journal Article | IST-REx-ID: 2985
Trnková, Libuše, Jiří Friml, and Oldřich Dračka. “Elimination Voltammetry of Adenine and Cytosine Mixtures.” Bioelectrochemistry. Elsevier, 2001. https://doi.org/10.1016/S1567-5394(01)00119-0.
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2001 | Conference Paper | IST-REx-ID: 3169
Kolmogorov, Vladimir, and Ramin Zabih. “Computing Visual Correspondence with Occlusions Using Graph Cuts,” 2:508–15. IEEE, 2001. https://doi.org/10.1109/ICCV.2001.937668.
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2001 | Book Chapter | IST-REx-ID: 3434
Huelsenbeck, John, and Jonathan P Bollback. “Application of the Likelihood Function in Phylogenetic Analysis.” In Handbook of Statistical Genetics, edited by David Balding, Martin Bishop, and Chriss Cannings, 415–39. Wiley-Blackwell, 2001. https://doi.org/10.1002/9780470061619.ch15.
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2001 | Journal Article | IST-REx-ID: 3438
Huelsenbeck, John, Fredrik Ronquist, Rasmus Nielsen, and Jonathan P Bollback. “Bayesian Inference of Phylogeny and Its Impact on Evolutionary Biology.” Science. American Association for the Advancement of Science, 2001. https://doi.org/10.1126/science.1065889.
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2001 | Journal Article | IST-REx-ID: 3439
Conn, Jan, Jonathan P Bollback, David Onyabe, Tessa Robinson, Richard Wilkerson, and Marinete Povoa. “Isolation of Polymorphic Microsatellite Markers from the Malaria Vector Anopheles Darlingi.” Molecular Ecology Notes. Wiley-Blackwell, 2001. https://doi.org/ 10.1046/j.1471-8278.2001.00078.x.
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2001 | Journal Article | IST-REx-ID: 3440
Huelsenbeck, John, and Jonathan P Bollback. “Empirical and Hierarchical Bayesian Estimation of Ancestral States.” Systematic Biology. Oxford University Press, 2001. https://doi.org/10.1080/10635150119871.
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2001 | Conference Paper | IST-REx-ID: 3447
Chatterjee, Krishnendu, Pallab Dasgupta, and Partha Chakrabarti. “Weighted Quantified Computation Tree Logic.” Elsevier, 2001.
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2001 | Journal Article | IST-REx-ID: 3493 | OA
Jones, M.V, Peter M Jonas, Y. Sahara, and G. Westbrook. “Microscopic Kinetics and Energetics Distinguish GABAA Receptor Agonists from Antagonists.” Biophysical Journal. Biophysical Society, 2001. https://doi.org/10.1016/S0006-3495(01)75909-7 .
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2001 | Journal Article | IST-REx-ID: 3494
Bartos, Marlene, Imre Vida, Michael Frotscher, Jörg Geiger, and Peter M Jonas. “Rapid Signaling at Inhibitory Synapses in a Dentate Gyrus Interneuron Network.” Journal of Neuroscience. Society for Neuroscience, 2001.
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2001 | Journal Article | IST-REx-ID: 3495
Jerecic, Jasna, Christian Schulze, Peter M Jonas, Rolf Sprengel, Peter Seeburg, and Joseph Bischofberger. “Impaired NMDA Receptor Function in Mouse Olfactory Bulb Neurons by Tetracycline-Sensitive NR1 (N598R) Expression.” Molecular Brain Research. Elsevier, 2001. https://doi.org/10.1016/S0169-328X(01)00221-2.
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