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6749 Publications


2005 | Conference Paper | IST-REx-ID: 3982
Wang Y, Agarwal P, Brown P, Edelsbrunner H, Rudolph J. 2005. Coarse and reliable geometric alignment for protein docking. PSB: Pacific Symposium on Biocomputing, 64–75.
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2005 | Journal Article | IST-REx-ID: 3983
Sohn J, Parks J, Buhrman G, Brown P, Kristjánsdóttir K, Safi A, Edelsbrunner H, Yang W, Rudolph J. 2005. Experimental validation of the docking orientation of Cdc25 with its Cdk2-CycA protein substrate. Biochemistry. 44(50), 16563–16573.
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2005 | Journal Article | IST-REx-ID: 4138
Barton NH, Polechova J. 2005. The limitations of adaptive dynamics as a model of evolution. Journal of Evolutionary Biology. 18(5), 1186–1190.
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2005 | Journal Article | IST-REx-ID: 4144
Ulrich F, Krieg M, Schötz E, Link V, Castanon I, Schnabel V, Taubenberger A, Müller D, Puech P, Heisenberg C-PJ. 2005. Wnt11 functions in gastrulation by controlling cell cohesion through Rab5c and E-cadherin. Developmental Cell. 9(4), 555–564.
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2005 | Journal Article | IST-REx-ID: 4155
Puech P, Taubenberger A, Ulrich F, Krieg M, Mueller D, Heisenberg C-PJ. 2005. Measuring cell adhesion forces of primary gastrulating cells from zebrafish using atomic force microscopy. Journal of Cell Science. 118(18), 4199–4206.
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2005 | Journal Article | IST-REx-ID: 4167
Norton W, Mangoli M, Lele Z, Pogoda H, Diamond B, Mercurio S, Russell C, Teraoka H, Stickney H, Rauch G, Heisenberg C-PJ, Houart C, Schilling T, Frohnhoefer H, Rastegar S, Neumann C, Gardiner RM, Strähle U, Geisler R, Rees M, Talbot W, Wilson S. 2005. Monorail/Foxa2 regulates floorplate differentiation and specification of oligodendrocytes, serotonergic raphe neurones and cranial motoneurones. Development. 132(4), 645–658.
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2005 | Journal Article | IST-REx-ID: 4171
Montero J, Carvalho L, Wilsch Bräuninger M, Kilian B, Mustafa C, Heisenberg C-PJ. 2005. Shield formation at the onset of zebrafish gastrulation. Development. 132(6), 1187–1198.
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2005 | Journal Article | IST-REx-ID: 4183
Köppen M, Fernández B, Carvalho L, Jacinto A, Heisenberg C-PJ. 2005. Misshapen mediates actin-based cell contraction during zebrafish epiboly and Drosophila dorsal closure. Mechanisms of Development. 122(Supplement 1), S112–S113.
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2005 | Journal Article | IST-REx-ID: 4249
Polechova J, Barton NH. 2005. Speciation through competition: A critical review. Evolution; International Journal of Organic Evolution. 59(6), 1194–1210.
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2005 | Journal Article | IST-REx-ID: 4251
Barton NH, Otto S. 2005. Evolution of recombination due to random drift. Genetics. 169(4), 2353–2370.
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2005 | Journal Article | IST-REx-ID: 4252 | OA
Johnson T, Barton NH. 2005. Theoretical models of selection and mutationon quantitative traits. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 360(1459), 1411–1425.
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2005 | Conference Paper | IST-REx-ID: 4367
Podelski A, Wies T. 2005. Boolean Heaps. SAS: Static Analysis Symposium, LNCS 3672, , 267–282.
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2005 | Conference Paper | IST-REx-ID: 4404
Alur R, Cerny P, Madhusudan P, Nam W. 2005. Synthesis of interface specifications for Java classes. POPL: Principles of Programming Languages, 98–109.
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2005 | Conference Paper | IST-REx-ID: 4412
Matic S, Henzinger TA. 2005. Trading end-to-end latency for composability. RTSS: Real-Time Systems Symposium, 99–110.
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2005 | Conference Paper | IST-REx-ID: 4418
Kirsch C, Sanvido M, Henzinger TA. 2005. A programmable microkernel for real-time systems. VEE: Virtual Execution Environments, 35–45.
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2005 | Journal Article | IST-REx-ID: 4454
Henzinger TA, Majumdar R, Raskin J. 2005. A classification of symbolic transition systems. ACM Transactions on Computational Logic (TOCL). 6(1), 1–32.
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2005 | Conference Paper | IST-REx-ID: 4455
Henzinger TA, Majumdar R, Prabhu V. 2005. Quantifying similarities between timed systems. FORMATS: Formal Modeling and Analysis of Timed Systems, LNCS, vol. 3829, 226–241.
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2005 | Conference Paper | IST-REx-ID: 4456
Henzinger TA, Jhala R, Majumdar R. 2005. Permissive interfaces. FSE: Foundations of Software Engineering, 31–40.
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2005 | Conference Paper | IST-REx-ID: 4457
Henzinger TA, Kirsch C, Matic S. 2005. Composable code generation for distributed Giotto. LCTES: Languages, Compilers, and Tools for Embedded Systems, 21–30.
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2005 | Conference Paper | IST-REx-ID: 4536
Doyen L, Henzinger TA, Raskin J. 2005. Automatic rectangular refinement of affine hybrid systems. FORMATS: Formal Modeling and Analysis of Timed Systems, LNCS, vol. 3829, 144–161.
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2005 | Conference Paper | IST-REx-ID: 4541
Chatterjee K, Henzinger TA. 2005. Semiperfect-information games. FSTTCS: Foundations of Software Technology and Theoretical Computer Science, LNCS, vol. 3821, 1–18.
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2005 | Conference Paper | IST-REx-ID: 4553
Chatterjee K, De Alfaro L, Henzinger TA. 2005. The complexity of stochastic Rabin and Streett games. ICALP: Automata, Languages and Programming, LNCS, vol. 3580, 878–890.
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2005 | Conference Paper | IST-REx-ID: 4554
Chatterjee K, Henzinger TA, Jurdziński M. 2005. Mean-payoff parity games. LICS: Logic in Computer Science, 178–187.
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2005 | Conference Paper | IST-REx-ID: 4557
Chatterjee K, Henzinger TA, Jhala R, Majumdar R. 2005. Counterexample-guided planning. UAI: Uncertainty in Artificial Intelligence, 104–111.
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2005 | Conference Paper | IST-REx-ID: 4560
Chakrabarti A, Chatterjee K, Henzinger TA, Kupferman O, Majumdar R. 2005. Verifying quantitative properties using bound functions. CHARME: Correct Hardware Design and Verification Methods, LNCS, vol. 3725, 50–64.
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2005 | Conference Paper | IST-REx-ID: 4576
Beyer D, Chakrabarti A, Henzinger TA. 2005. Web service interfaces. WWW: World Wide Web Conference, 148–159.
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2005 | Conference Paper | IST-REx-ID: 4579
Beyer D, Henzinger TA, Jhala R, Majumdar R. 2005. Checking memory safety with BLAST. FASE: Fundamental Approaches To Software Engineering, LNCS, vol. 3442, 2–18.
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2005 | Journal Article | IST-REx-ID: 3000
Dhonukshe P, Kleine Vehn J, Friml J. 2005. Cell polarity, auxin transport and cytoskeleton mediated division planes: Who comes first? Protoplasma. 226(1–2), 67–73.
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2005 | Journal Article | IST-REx-ID: 3001
Paciorek T, Zažímalová E, Ruthardt N, Petrášek J, Stierhof Y, Kleine Vehn J, Morris D, Emans N, Jürgens G, Geldner N, Friml J. 2005. Auxin inhibits endocytosis and promotes its own efflux from cells. Nature. 435(7046), 1251–1256.
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2005 | Journal Article | IST-REx-ID: 3003
Vieten A, Vanneste S, Wiśniewska J, Benková E, Benjamins R, Beeckman T, Luschnig C, Friml J. 2005. Functional redundancy of PIN proteins is accompanied by auxin-dependent cross-regulation of PIN expression. Development. 132(20), 4521–4531.
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2005 | Journal Article | IST-REx-ID: 3004
Weijers D, Sauer M, Meurette O, Friml J, Ljung K, Sandberg G, Hooykaas P, Offringa R. 2005. Maintenance of embryonic auxin distribution for apical basal patterning by PIN FORMED dependent auxin transport in Arabidopsis. Plant Cell. 17(9), 2517–2526.
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2005 | Journal Article | IST-REx-ID: 3141
Rodal A, Sokolova O, Robins D, Daugherty K, Hippenmeyer S, Riezman H, Grigorieff N, Goode B. 2005. Conformational changes in the Arp2 3 complex leading to actin nucleation. Nature Structural and Molecular Biology. 12(1), 26–31.
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2005 | Journal Article | IST-REx-ID: 3143
Hippenmeyer S, Vrieseling E, Sigrist M, Portmann T, Laengle C, Ladle D, Arber S. 2005. A developmental switch in the response of DRG neurons to ETS transcription factor signaling. PLoS Biology. 3(5), 0878–0890.
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2005 | Conference Paper | IST-REx-ID: 3175
Rother C, Kumar S, Kolmogorov V, Blake A. 2005. Digital tapestry. CVPR: Computer Vision and Pattern Recognition vol. 1, 589–596.
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2005 | Conference Paper | IST-REx-ID: 3176
Kolmogorov V, Criminisi A, Blake A, Cross G, Rother C. 2005. Bi-layer segmentation of binocular stereo video. CVPR: Computer Vision and Pattern Recognition, 1186–1186.
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2005 | Conference Paper | IST-REx-ID: 3181
Kolmogorov V, Wainwright M. 2005. On the optimality of tree reweighted max product message passing. UAI: Uncertainty in Artificial Intelligence, 316–323.
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2005 | Conference Paper | IST-REx-ID: 3182
Kolmogorov V, Boykov Y. 2005. What metrics can be approximated by geo cuts or global optimization of length area and flux. ICCV: International Conference on Computer Vision vol. 1, 564–571.
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2005 | Conference Paper | IST-REx-ID: 3183
Kolmogorov V, Criminisi A, Blake A, Cross G, Rother C. 2005. Bi-layer segmentation of binocular stereo video. CVPR: Computer Vision and Pattern Recognition vol. 2, 407–414.
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2005 | Conference Paper | IST-REx-ID: 3211
Bellare M, Pietrzak KZ, Rogaway P. 2005. Improved security analyses for CBC MACs. CRYPTO: International Cryptology Conference, LNCS, vol. 3621, 527–545.
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2005 | Conference Paper | IST-REx-ID: 3212
Dodis Y, Oliveira R, Pietrzak KZ. 2005. On the generic insecurity of the full domain hash. CRYPTO: International Cryptology Conference, LNCS, vol. 3621, 449–466.
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2005 | Conference Paper | IST-REx-ID: 3213
Pietrzak KZ. 2005. Composition does not imply adaptive security. CRYPTO: International Cryptology Conference, LNCS, vol. 3621, 55–65.
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2005 | Journal Article | IST-REx-ID: 3416 | OA
Janovjak HL, Sapra T, Mueller D. 2005. Complex stability of single proteins explored by forced unfolding experiments. Biophysical Journal. 88(5), 37–39.
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2005 | Journal Article | IST-REx-ID: 3417
Kuhn M, Janovjak HL, Hubain M, Mueller D. 2005. Automated alignment and pattern recognition of single-molecule force spectroscopy data. Journal of Microscopy. 218(2), 125–132.
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2005 | Journal Article | IST-REx-ID: 3418
Janovjak HL, Struckmeier J, Mueller D. 2005. Hydrodynamic effects in fast AFM single molecule force measurements. European Biophysics Journal. 34(1), 91–96.
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2005 | Journal Article | IST-REx-ID: 3426 | OA
Bollenbach MT, Kruse K, Pantazis P, González Gaitán M, Jülicher F. 2005. Robust formation of morphogen gradients. Physical Review Letters. 94(1).
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2005 | Book Chapter | IST-REx-ID: 3433
Bollback JP. 2005.Posterior mapping and posterior predictive distributions. In: Statistical methods in Molecular Evolution. , 439–462.
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2005 | Journal Article | IST-REx-ID: 3443
Klausberger T, Marton L, O’Neill J, Huck J, Dalezios Y, Fuentealba P, Suen W, Papp E, Kaneko T, Watanabe M, Csicsvari JL, Somogyi P. 2005. Complementary roles of cholecystokinin- and parvalbumin-expressing GABAergic neurons in hippocampal network oscillations. Journal of Neuroscience. 25(42), 9782–9793.
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2005 | Patent | IST-REx-ID: 3509
Williams S, Edelsbrunner H, Fu P. 2005. Methods, apparatus and computer program products for modeling three-dimensional colored objects.
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2005 | Conference Paper | IST-REx-ID: 3557
Edelsbrunner H. 2005. Surface tiling with differential topology. SGP: Eurographics Symposium on Geometry processing, 9–11.
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2005 | Conference Paper | IST-REx-ID: 3558
Attali D, Cohen Steiner D, Edelsbrunner H. 2005. Extraction and simplification of iso-surfaces in tandem. SGP: Eurographics Symposium on Geometry processing, 139–148.
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