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7266 Publications


2008 | Journal Article | IST-REx-ID: 3734 | OA
The role of input noise in transcriptional regulation
G. Tkačik, T. Gregor, W. Bialek, PLoS One 3 (2008).
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2008 | Journal Article | IST-REx-ID: 3739
Information capacity of genetic regulatory elements
G. Tkačik, C. Callan, W. Bialek, Physical Review E Statistical Nonlinear and Soft Matter Physics 78 (2008).
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2008 | Journal Article | IST-REx-ID: 3740 | OA
Information flow and optimization in transcriptional regulation
G. Tkačik, C. Callan, W. Bialek, PNAS 105 (2008) 12265–12270.
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2008 | Journal Article | IST-REx-ID: 3744 | OA
Decoding spike timing: The differential reverse-correlation method
G. Tkačik, M. Magnasco, Biosystems 93 (2008) 90–100.
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2008 | Journal Article | IST-REx-ID: 3751 | OA
Uncovering cis regulatory codes using synthetic promoter shuffling
A. Kinkhabwala, C.C. Guet, PLoS One 3 (2008).
View | Files available | DOI | PubMed | Europe PMC
 

2008 | Journal Article | IST-REx-ID: 3754
Minimally invasive determination of mRNA concentration in single living bacteria
C.C. Guet, L. Bruneaux, T. Min, D. Siegal Gaskins, I. Figueroa, T. Emonet, P. Cluzel, Nucleic Acids Research 36 (2008).
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2008 | Journal Article | IST-REx-ID: 3760
Fast viscoelastic behavior with thin features
C.J. Wojtan, G. Turk, ACM Transactions on Graphics 27 (2008).
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2008 | Journal Article | IST-REx-ID: 3769
An Exact Algorithm for the Geodesic Distance between Phylogenetic Trees.
A. Kupczok, A. Von Haeseler, S. Klaere, Journal of Computational Biology 15 (2008) 577–591.
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2008 | Journal Article | IST-REx-ID: 3822 | OA
Action potential initiation and propagation in hippocampal mossy fibre axons
C. Schmidt Hieber, P.M. Jonas, J. Bischofberger, Journal of Physiology 586 (2008) 1849–57.
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2008 | Journal Article | IST-REx-ID: 3823
The two sides of hippocampal mossy fiber plasticity (Review)
A. Kerr, P.M. Jonas, Neuron 57 (2008) 5–7.
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2008 | Journal Article | IST-REx-ID: 3824
Nanodomain coupling between Ca(2+) channels and Ca2+ sensors promotes fast and efficient transmitter release at a cortical GABAergic synapse
I. Bucurenciu, Á. Kulik, B. Schwaller, M. Frotscher, P.M. Jonas, Neuron 57 (2008) 536–45.
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2008 | Journal Article | IST-REx-ID: 3825 | OA
Efficient Ca(2+) buffering in fast-spiking basket cells of rat hippocampus
Y. Aponte, J. Bischofberger, P.M. Jonas, Journal of Physiology 586 (2008) 2061–75.
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2008 | Journal Article | IST-REx-ID: 3826
Postnatal differentiation of basket cells from slow to fast signaling devices
D. Doischer, J. Hosp, Y. Yanagawa, K. Obata, P.M. Jonas, I. Vida, M. Bartos, Journal of Neuroscience 28 (2008) 12956–68.
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2008 | Journal Article | IST-REx-ID: 3827 View | DOI
 

2008 | Book Chapter | IST-REx-ID: 3872
Value iteration
K. Chatterjee, T.A. Henzinger, in:, 25 Years in Model Checking, Springer, 2008, pp. 107–138.
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2008 | Conference Paper | IST-REx-ID: 3873
Controller synthesis with budget constraints
K. Chatterjee, R. Majumdar, T.A. Henzinger, in:, Springer, 2008, pp. 72–86.
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2008 | Conference Paper | IST-REx-ID: 3874
Trading infinite memory for uniform randomness in timed games
K. Chatterjee, T.A. Henzinger, V. Prabhu, in:, Springer, 2008, pp. 87–100.
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2008 | Conference Paper | IST-REx-ID: 3875
Model-checking omega-regular properties of interval Markov chains
K. Chatterjee, T.A. Henzinger, K. Sen, in:, Springer, 2008, pp. 302–317.
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2008 | Conference Paper | IST-REx-ID: 3876
Timed parity games: complexity and robustness
K. Chatterjee, T.A. Henzinger, V. Prabhu, in:, Springer, 2008, pp. 124–140.
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2008 | Conference Paper | IST-REx-ID: 3877
Environment assumptions for synthesis
K. Chatterjee, T.A. Henzinger, B. Jobstmann, in:, Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2008, pp. 147–161.
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2008 | Conference Paper | IST-REx-ID: 3878 | OA
The complexity of coverage
K. Chatterjee, L. De Alfaro, R. Majumdar, in:, Springer, 2008, pp. 91–106.
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2008 | Conference Paper | IST-REx-ID: 3879
Quantitative languages
K. Chatterjee, L. Doyen, T.A. Henzinger, in:, Springer, 2008, pp. 385–400.
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2008 | Conference Paper | IST-REx-ID: 3880
Strategy construction for parity games with imperfect information
D. Berwanger, K. Chatterjee, L. Doyen, T.A. Henzinger, S. Raje, in:, Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2008, pp. 325–339.
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2008 | Journal Article | IST-REx-ID: 3903
The introduction history of invasive garden ants in Europe: integrating genetic, chemical and behavioural approaches
L.V. Ugelvig, F. Drijfhout, D. Kronauer, J. Boomsma, J. Pedersen, S. Cremer, BMC Biology 6 (2008).
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2008 | Journal Article | IST-REx-ID: 3905
Imperfect chemical female mimicry in males of the ant Cardiocondyla obscurior
S. Cremer, P. D’Ettorre, F. Drijfhout, M. Sledge, S. Turillazzi, J. Heinze, Naturwissenschaften 95 (2008) 1101–1105.
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2008 | Journal Article | IST-REx-ID: 3906
The evolution of invasiveness in garden ants
S. Cremer, L.V. Ugelvig, F. Drijfhout, B. Schlick Steiner, F. Steiner, B. Seifert, D. Hughes, A. Schulz, K. Petersen, H. Konrad, C. Stauffer, K. Kiran, X. Espadaler, P. D’Ettorre, N. Aktaç, J. Eilenberg, G. Jones, D. Nash, J. Pedersen, J. Boomsma, PLoS One 3 (2008).
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2008 | Journal Article | IST-REx-ID: 3907
Queen number influences the timing of the sexual production in colonies of Cardiocondyla ants
M. Suefuji, S. Cremer, J. Oettler, J. Heinze, Biology Letters 4 (2008) 670–673.
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2008 | Journal Article | IST-REx-ID: 3939
The microanatomy of T-cell responses
T. Lämmermann, M.K. Sixt, Immunological Reviews 221 (2008) 26–43.
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2008 | Journal Article | IST-REx-ID: 3940
The extracellular matrix of the spleen as a potential organizer of immune cell compartments
Z. Lokmic, T. Lämmermann, M.K. Sixt, S. Cardell, R. Hallmann, L. Sorokin, Seminars in Immunology 20 (2008) 4–13.
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2008 | Journal Article | IST-REx-ID: 3941
Rapid leukocyte migration by integrin-independent flowing and squeezing
T. Lämmermann, B. Bader, S. Monkley, T. Worbs, R. Wedlich Söldner, K. Hirsch, M. Keller, R. Förster, D. Critchley, R. Fässler, M.K. Sixt, Nature 453 (2008) 51–55.
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2008 | Journal Article | IST-REx-ID: 3942
Sialyltransferase ST3Gal-IV controls CXCR2-mediated firm leukocyte arrest during inflammation
D. Frommhold, A. Ludwig, M.G. Bixel, A. Zarbock, I. Babushkina, M. Weissinger, S. Cauwenberghs, L. Ellies, J. Marth, A. Beck Sickinger, M.K. Sixt, B. Lange Sperandio, A. Zernecke, E. Brandt, C. Weber, D. Vestweber, K. Ley, M. Sperandio, The Journal of Experimental Medicine 205 (2008) 1435–1446.
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2008 | Journal Article | IST-REx-ID: 3943
Proteinase 3 and neutrophil elastase enhance inflammation in mice by inactivating antiinflammatory progranulin
K. Kessenbrock, L. Fröhlich, M.K. Sixt, T. Lämmermann, H. Pfister, A. Bateman, A. Belaaouaj, J. Ring, M. Ollert, R. Fässler, D. Jenne, The Journal of Clinical Investigation 118 (2008) 2438–2447.
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2008 | Journal Article | IST-REx-ID: 3944
Lifeact: a versatile marker to visualize F-actin
J. Riedl, A. Crevenna, K. Kessenbrock, J. Yu, D. Neukirchen, M. Bista, F. Bradke, D. Jenne, T. Holak, Z. Werb, M.K. Sixt, R. Wedlich Soldner, Nature Methods 5 (2008) 605–607.
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2008 | Journal Article | IST-REx-ID: 3945
The lymph vessel network in mouse skin visualised with antibodies against the hyaluronan receptor LYVE-1
C. Tripp, B. Haid, V. Flacher, M.K. Sixt, H. Peter, J. Farkas, R. Gschwentner, L. Sorokin, N. Romani, P. Stoitzner, Immunobiology 213 (2008) 715–28.
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2008 | Book Chapter | IST-REx-ID: 3969
Persistent homology - a survey
H. Edelsbrunner, J. Harer, in:, Surveys on Discrete and Computational Geometry: Twenty Years Later, American Mathematical Society, 2008, pp. 257–282.
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2008 | Journal Article | IST-REx-ID: 3970
Comparison of pattern detection methods in microarray time series of the segmentation clock
M. Dequéant, S. Ahnert, H. Edelsbrunner, T. Fink, E. Glynn, G. Hattem, A. Kudlicki, Y. Mileyko, J. Morton, A. Mushegian, L. Pachter, M. Rowicka, A. Shiu, B. Sturmfels, O. Pourquie, PLoS One 3 (2008).
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2008 | Journal Article | IST-REx-ID: 3971
Time-varying Reeb graphs for continuous space-time data
H. Edelsbrunner, J. Harer, A. Mascarenhas, V. Pascucci, J. Snoeyink, Computational Geometry: Theory and Applications 41 (2008) 149–166.
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2008 | Conference Paper | IST-REx-ID: 3974
Reeb spaces of piecewise linear mappings
H. Edelsbrunner, J. Harer, A. Patel, in:, ACM, 2008, pp. 242–250.
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2008 | Journal Article | IST-REx-ID: 4135
The quest for a null model for macroecological patterns: geometry of species distributions at multiple spatial scales
D. Storch, A. Šizling, J. Reif, J. Polechova, E. Šizlingová, K. Gaston, Ecology Letters 11 (2008) 771–784.
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2008 | Book Chapter | IST-REx-ID: 4137
Patterns of biodiversity and limits to adaptation in time and space
J. Bridle, J. Polechova, T. Vines, in:, J.R. R. K. Butlin, D. Schluter (Eds.), Evolution and Speciation, Cambridge University Press, 2008, pp. 77–101.
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2008 | Journal Article | IST-REx-ID: 4141
Lpp is involved in Wnt/PCP signaling and acts together with Scrib to mediate convergence and extension movements during zebrafish gastrulation
H. Vervenne, K. Crombez, K. Lambaerts, L. Carvalho, M. Köppen, C.-P.J. Heisenberg, W. Van De Ven, M. Petit, Developmental Biology 320 (2008) 267–277.
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2008 | Journal Article | IST-REx-ID: 4150
Quantitative differences in tissue surface tension influence zebrafish germ layer positioning
E. Schötz, R. Burdine, F. Julicher, M. Steinberg, C.-P.J. Heisenberg, R. Foty, HFSP Journal 2 (2008) 42–56.
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2008 | Journal Article | IST-REx-ID: 4161
Origin and shaping of the laterality organ in zebrafish
P. Oteíza, M. Köppen, M. Concha, C.-P.J. Heisenberg, Development 135 (2008) 2807–2813.
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2008 | Journal Article | IST-REx-ID: 4180
A Bond for a Lifetime: Employing Membrane Nanotubes from Living Cells to Determine Receptor-Ligand Kinetics
M. Krieg, J. Helenius, C.-P.J. Heisenberg, D. Mueller, Angewandte Chemie - International Edition 47 (2008) 9775–9777.
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2008 | Journal Article | IST-REx-ID: 4181
Tensile forces govern germ-layer organization in zebrafish
M. Krieg, Y. Arboleda Estudillo, P. Puech, J. Käfer, F. Graner, D. Mueller, C.-P.J. Heisenberg, Nature Cell Biology 10 (2008) 429–436.
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2008 | Journal Article | IST-REx-ID: 4190 View | DOI
 

2008 | Journal Article | IST-REx-ID: 4193
Single-cell force spectroscopy
J. Helenius, C.-P.J. Heisenberg, H. Gaub, D. Mueller, Journal of Cell Science 121 (2008) 1785–1791.
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2008 | Journal Article | IST-REx-ID: 4198
Back and forth between cell fate specification and movement during vertebrate gastrulation
C.-P.J. Heisenberg, L. Solnica Krezel, Current Opinion in Genetics & Development 18 (2008) 311–316.
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2008 | Journal Article | IST-REx-ID: 4227
Precision of the Dpp gradient
T. Bollenbach, P. Pantazis, A. Kicheva, C. Bokel, M. González Gaitán, F. Julicher, Development 135 (2008) 1137–1146.
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2008 | Conference Paper | IST-REx-ID: 4244 View | DOI
 

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