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9078 Publications


2014 | Book Chapter | IST-REx-ID: 7743
Influence of the environment on the genetic architecture of traits involved in sexual selection within wild populations
M.R. Robinson, A. Qvarnström, in:, J. Hunt, D. Hosken (Eds.), Genotype-by-Environment Interactions and Sexual Selection, Wiley, Chichester, UK, 2014, pp. 137–168.
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2014 | Journal Article | IST-REx-ID: 7744
Explaining additional genetic variation in complex traits
M.R. Robinson, N.R. Wray, P.M. Visscher, Trends in Genetics 30 (2014) 124–132.
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2014 | Journal Article | IST-REx-ID: 7768
Vibrational and structural signatures of the crossover between dense glassy and sparse gel-like attractive colloidal packings
M.A. Lohr, T. Still, R. Ganti, M.D. Gratale, Z.S. Davidson, K.B. Aptowicz, C.P. Goodrich, D.M. Sussman, A.G. Yodh, Physical Review E 90 (2014).
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2014 | Journal Article | IST-REx-ID: 7771 | OA
Comment on “Repulsive contact interactions make jammed particulate systems inherently nonharmonic”
C.P. Goodrich, A.J. Liu, S.R. Nagel, Physical Review Letters 112 (2014).
[Preprint] View | DOI | Download Preprint (ext.) | arXiv
 

2014 | Journal Article | IST-REx-ID: 7772
Phonon dispersion and elastic moduli of two-dimensional disordered colloidal packings of soft particles with frictional interactions
T. Still, C.P. Goodrich, K. Chen, P.J. Yunker, S. Schoenholz, A.J. Liu, A.G. Yodh, Physical Review E 89 (2014).
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2014 | Journal Article | IST-REx-ID: 7773
Solids between the mechanical extremes of order and disorder
C.P. Goodrich, A.J. Liu, S.R. Nagel, Nature Physics 10 (2014) 578–581.
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2014 | Journal Article | IST-REx-ID: 7769
Jamming in finite systems: Stability, anisotropy, fluctuations, and scaling
C.P. Goodrich, S. Dagois-Bohy, B.P. Tighe, M. van Hecke, A.J. Liu, S.R. Nagel, Physical Review E 90 (2014).
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2014 | Journal Article | IST-REx-ID: 7770
Contact nonlinearities and linear response in jammed particulate packings
C.P. Goodrich, A.J. Liu, S.R. Nagel, Physical Review E 90 (2014).
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2014 | Journal Article | IST-REx-ID: 8021 | OA
Activity-dependent dendritic spine neck changes are correlated with synaptic strength
R. Araya, T.P. Vogels, R. Yuste, Proceedings of the National Academy of Sciences 111 (2014) E2895–E2904.
[Published Version] View | DOI | Download Published Version (ext.) | PubMed | Europe PMC
 

2014 | Journal Article | IST-REx-ID: 8023 | OA
Connection-type-specific biases make uniform random network models consistent with cortical recordings
C. Tomm, M. Avermann, C. Petersen, W. Gerstner, T.P. Vogels, Journal of Neurophysiology 112 (2014) 1801–1814.
[Published Version] View | Files available | DOI | PubMed | Europe PMC
 

2014 | Journal Article | IST-REx-ID: 8022 | OA
Optimal control of transient dynamics in balanced networks supports generation of complex movements
G. Hennequin, T.P. Vogels, W. Gerstner, Neuron 82 (2014) 1394–1406.
[Submitted Version] View | DOI | Download Submitted Version (ext.) | PubMed | Europe PMC
 

2014 | Journal Article | IST-REx-ID: 809
Cryo electron microscopy of tubular arrays of HIV-1 Gag resolves structures essential for immature virus assembly
T. Bharata, L. Menendez, W. Hagena, V. Luxd, S. Igonete, M. Schorba, F.K. Schur, H. Kraüsslich, J. Briggsa, PNAS 111 (2014) 8233–8238.
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2014 | Journal Article | IST-REx-ID: 8244
Generation of a canine anti-EGFR (ErbB-1) antibody for passive immunotherapy in dog cancer patients
J. Singer, J. Singer, W. Wang, M. Weichselbaumer, M. Matz, A. Mader, W. Steinfellner, S. Meitz, D. Mechtcheriakova, Y. Sobanov, M. Willmann, T. Stockner, E. Spillner, R. Kunert, E. Jensen-Jarolim, Molecular Cancer Therapeutics 13 (2014) 1777–1790.
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2014 | Journal Article | IST-REx-ID: 8459
Relax: The analysis of biomolecular kinetics and thermodynamics using NMR relaxation dispersion data
S. Morin, T.E. Linnet, M. Lescanne, P. Schanda, G.S. Thompson, M. Tollinger, K. Teilum, S. Gagné, D. Marion, C. Griesinger, M. Blackledge, E.J. d’Auvergne, Bioinformatics 30 (2014) 2219–2220.
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2014 | Journal Article | IST-REx-ID: 8458
Atomic model of a cell-wall cross-linking enzyme in complex with an intact bacterial peptidoglycan
P. Schanda, S. Triboulet, C. Laguri, C.M. Bougault, I. Ayala, M. Callon, M. Arthur, J.-P. Simorre, Journal of the American Chemical Society 136 (2014) 17852–17860.
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2014 | Journal Article | IST-REx-ID: 8460
Probing transient conformational states of proteins by solid-state R1ρ relaxation-dispersion NMR spectroscopy
P. Ma, J.D. Haller, J. Zajakala, P. Macek, A.C. Sivertsen, D. Willbold, J. Boisbouvier, P. Schanda, Angewandte Chemie International Edition 53 (2014) 4312–4317.
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2014 | Journal Article | IST-REx-ID: 8501
Generic fast diffusion for a class of non-convex Hamiltonians with two degrees of freedom
A. Bounemoura, V. Kaloshin, Moscow Mathematical Journal 14 (2014) 181–203.
[Preprint] View | DOI | arXiv
 

2014 | Journal Article | IST-REx-ID: 8500
Arnol′d diffusion in a pendulum lattice
V. Kaloshin, M. Levi, M. Saprykina, Communications on Pure and Applied Mathematics 67 (2014) 748–775.
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2014 | Journal Article | IST-REx-ID: 852
Long-Term asymmetrical acceleration of protein evolution after gene duplication
O. Rosello, F. Kondrashov, Genome Biology and Evolution 6 (2014) 1949–1955.
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2014 | Journal Article | IST-REx-ID: 856
Duplication of a promiscuous transcription factor drives the emergence of a new regulatory network
K. Pougach, A. Voet, F. Kondrashov, K. Voordeckers, J. Christiaens, B. Baying, V. Bénès, R. Sakai, J. Aerts, B. Zhu, P. Van Dijck, K. Verstrepen, Nature Communications 5 (2014).
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2014 | Journal Article | IST-REx-ID: 863
The ctenophore genome and the evolutionary origins of neural systems
Moroz L, Kocot K, Citarella M, Dosung S, Norekian T, Povolotskaya I, Grigorenko A, Dailey C, Berezikov E, Buckley K, Ptitsyn A, Reshetov D, Mukherjee K, Moroz T, Bobkova Y, Yu F, Kapitonov V, Jurka J, Bobkov Y, Swore J, Girardo D, Fodor A, Gusev F, Sanford R, Bruders R, Kittler E, Mills C, Rast J, Derelle R, Solovyev V, Kondrashov F, Swalla B, Sweedler J, Rogaev E, Halanych K, Kohn A. 2014. The ctenophore genome and the evolutionary origins of neural systems. Nature. 510(7503), 109–114.
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2014 | Journal Article | IST-REx-ID: 865
Anti leprosy drug clofazimine inhibits growth of triple-negative breast cancer cells via inhibition of canonical Wnt signaling
A. Koval, P. Vlasov, P. Shichkova, S. Khunderyakova, Y. Markov, J. Panchenko, A. Volodina, F. Kondrashov, V. Katanaev, Biochemical Pharmacology 87 (2014) 571–578.
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2014 | Journal Article | IST-REx-ID: 925
Balance between apical membrane growth and luminal matrix resistance determines epithelial tubule shape
B. Dong, E.B. Hannezo, S. Hayashi, Cell Reports 7 (2014) 941–950.
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2014 | Journal Article | IST-REx-ID: 927
Theory of epithelial sheet morphology in three dimensions
E.B. Hannezo, J. Prost, J. Joanny, PNAS 111 (2014) 27–32.
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2014 | Journal Article | IST-REx-ID: 9519
DNA methylation as a system of plant genomic immunity
M.Y. Kim, D. Zilberman, Trends in Plant Science 19 (2014) 320–326.
View | DOI | PubMed | Europe PMC
 

2014 | Journal Article | IST-REx-ID: 96 | OA
Coherent operations and screening in multielectron spin qubits
A.P. Higginbotham, F. Kuemmeth, M. Hanson, A. Gossard, C. Marcus, APS Physics, Physical Review Letters 112 (2014).
[Preprint] View | DOI | Download Preprint (ext.) | arXiv
 

2014 | Journal Article | IST-REx-ID: 9594 | OA
On the number of spanning trees in random regular graphs
C. Greenhill, M.A. Kwan, D. Wind, The Electronic Journal of Combinatorics 21 (2014).
[Published Version] View | DOI | Download Published Version (ext.) | arXiv
 

2014 | Journal Article | IST-REx-ID: 9655 | OA
Correlative light- and electron microscopy with chemical tags
M. Perkovic, M. Kunz, U. Endesfelder, S. Bunse, C. Wigge, Z. Yu, V.-V. Hodirnau, M.P. Scheffer, A. Seybert, S. Malkusch, E.M. Schuman, M. Heilemann, A.S. Frangakis, Journal of Structural Biology 186 (2014) 205–213.
[Published Version] View | Files available | DOI | PubMed | Europe PMC
 

2014 | Journal Article | IST-REx-ID: 9686
Strength of metals under vibrations – dislocation-density-function dynamics simulations
B. Cheng, H.S. Leung, A.H.W. Ngan, Philosophical Magazine 95 (2014) 1845–1865.
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2014 | Journal Article | IST-REx-ID: 2083 | OA
Role of sex and migration in adaptation to sink environments
M. Lagator, A. Morgan, P. Neve, N. Colegrave, Evolution 68 (2014) 2296–2305.
[Published Version] View | Files available | DOI
 

2014 | Research Data Reference | IST-REx-ID: 9747 | OA
Data from: Role of sex and migration in adaptation to sink environments
M. Lagator, A. Morgan, P. Neve, N. Colegrave, (2014).
[Published Version] View | Files available | DOI | Download Published Version (ext.)
 

2014 | Journal Article | IST-REx-ID: 977 | OA
Interferometric probes of many-body localization
M. Serbyn, M. Knap, S. Gopalakrishnan, Z. Papić, N. Yao, C. Laumann, D. Abanin, M. Lukin, E. Demler, Physical Review Letters 113 (2014).
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2014 | Journal Article | IST-REx-ID: 980 | OA
Quantum quenches in the many-body localized phase
M. Serbyn, Z. Papić, D. Abanin, Physical Review B - Condensed Matter and Materials Physics 90 (2014).
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2014 | Journal Article | IST-REx-ID: 98 | OA
Hole spin coherence in a Ge/Si heterostructure nanowire
A.P. Higginbotham, T. Larsen, J. Yao, H. Yan, C. Lieber, C. Marcus, F. Kuemmeth, Nano Letters 14 (2014) 3582–3586.
[Preprint] View | DOI | Download Preprint (ext.) | arXiv
 

2014 | Journal Article | IST-REx-ID: 2086 | OA
So near and yet so far: Harmonic radar reveals reduced homing ability of Nosema infected honeybees
S. Wolf, D. Mcmahon, K. Lim, C. Pull, S. Clark, R. Paxton, J. Osborne, PLoS One 9 (2014).
[Published Version] View | Files available | DOI
 

2014 | Research Data Reference | IST-REx-ID: 9888
Supporting information
S. Wolf, D. Mcmahon, K. Lim, C. Pull, S. Clark, R. Paxton, J. Osborne, (2014).
[Published Version] View | Files available | DOI
 

2014 | Journal Article | IST-REx-ID: 845
Crossing-over in a hypervariable species preferentially occurs in regions of high local similarity
V. Seplyarskiy, M. Logacheva, A. Penin, M. Baranová, E. Leushkin, N. Demidenko, A. Klepikova, F. Kondrashov, A. Kondrashov, T. James, Molecular Biology and Evolution 31 (2014) 3016–3025.
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2014 | Journal Article | IST-REx-ID: 892
A structural perspective of compensatory evolution
D. Ivankov, A. Finkelstein, F. Kondrashov, Current Opinion in Structural Biology 26 (2014) 104–112.
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2014 | Journal Article | IST-REx-ID: 9050 | OA
Hydrodynamic capture of microswimmers into sphere-bound orbits
D. Takagi, J.A. Palacci, A.B. Braunschweig, M.J. Shelley, J. Zhang, Soft Matter 10 (2014).
[Preprint] View | DOI | Download Preprint (ext.) | PubMed | Europe PMC | arXiv
 

2014 | Journal Article | IST-REx-ID: 9166 | OA
Light-activated self-propelled colloids
J.A. Palacci, S. Sacanna, S.-H. Kim, G.-R. Yi, D.J. Pine, P.M. Chaikin, Philosophical Transactions of the Royal Society A: Mathematical, Physical and Engineering Sciences 372 (2014).
[Published Version] View | DOI | Download Published Version (ext.) | PubMed | Europe PMC | arXiv
 

2014 | Journal Article | IST-REx-ID: 926
Growth homeostatic regulation and stem cell dynamics in tissues
E.B. Hannezo, J. Prost, J. Joanny, Journal of the Royal Society Interface 11 (2014).
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2014 | Journal Article | IST-REx-ID: 9458 | OA
Dnmt1-independent CG methylation contributes to nucleosome positioning in diverse eukaryotes
J.T. Huff, D. Zilberman, Cell 156 (2014) 1286–1297.
[Published Version] View | DOI | Download Published Version (ext.) | PubMed | Europe PMC
 

2014 | Journal Article | IST-REx-ID: 9479 | OA
The AAA-ATPase molecular chaperone Cdc48/p97 disassembles sumoylated centromeres, decondenses heterochromatin, and activates ribosomal RNA genes
Z. Mérai, N. Chumak, M. García-Aguilar, T.-F. Hsieh, T. Nishimura, V.K. Schoft, J. Bindics, L. Ślusarz, S. Arnoux, S. Opravil, K. Mechtler, D. Zilberman, R.L. Fischer, H. Tamaru, Proceedings of the National Academy of Sciences 111 (2014) 16166–16171.
[Published Version] View | DOI | Download Published Version (ext.) | PubMed | Europe PMC
 

2014 | Journal Article | IST-REx-ID: 9662 | OA
Direct path integral estimators for isotope fractionation ratios
B. Cheng, M. Ceriotti, The Journal of Chemical Physics 141 (2014).
[Preprint] View | DOI | Download Preprint (ext.) | PubMed | Europe PMC | arXiv
 

2014 | Journal Article | IST-REx-ID: 97 | OA
Antilocalization of coulomb blockade in a Ge/Si nanowire
A.P. Higginbotham, F. Kuemmeth, T. Larsen, M. Fitzpatrick, J. Yao, H. Yan, C. Lieber, C. Marcus, APS Physics, Physical Review Letters 112 (2014).
View | DOI | Download None (ext.) | arXiv
 

2014 | Journal Article | IST-REx-ID: 2004 | OA
Boolean modelling reveals new regulatory connections between transcription factors orchestrating the development of the ventral spinal cord
A. Lovrics, Y. Gao, B. Juhász, I. Bock, H. Byrne, A. Dinnyés, K. Kovács, PLoS One 9 (2014).
[Published Version] View | Files available | DOI
 

2014 | Research Data Reference | IST-REx-ID: 9722
Transition probability between TF expression states when Dbx2 inhibits Nkx2.2
A. Lovrics, Y. Gao, B. Juhász, I. Bock, H.M. Byrne, A. Dinnyés, K. Kovács, (2014).
[Published Version] View | Files available | DOI
 

2014 | Journal Article | IST-REx-ID: 2039 | OA
The time scale of evolutionary innovation
K. Chatterjee, A. Pavlogiannis, B. Adlam, M. Nowak, PLoS Computational Biology 10 (2014).
[Published Version] View | Files available | DOI
 

2014 | Journal Article | IST-REx-ID: 2161
Increased grooming after repeated brood care provides sanitary benefits in a clonal ant
C. Westhus, L.V. Ugelvig, E. Tourdot, J. Heinze, C. Doums, S. Cremer, Behavioral Ecology and Sociobiology 68 (2014) 1701–1710.
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2014 | Journal Article | IST-REx-ID: 2036 | OA
Selection history and epistatic interactions impact dynamics of adaptation to novel environmental stresses
M. Lagator, N. Colegrave, P. Neve, Proceedings of the Royal Society of London Series B Biological Sciences 281 (2014).
[Submitted Version] View | Files available | DOI | Download Submitted Version (ext.)
 

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