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7346 Publications


2009 | Conference Paper | IST-REx-ID: 4376
R. Lublinerman, S. Chaudhuri, and P. Cerny, “Parallel programming with object assemblies,” presented at the Oopsla Object Oriented Programming Systems Languages and Applications, 2009, pp. 61–80.
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2009 | Conference Paper | IST-REx-ID: 4377
J. Hoenicke, K. R. Leino, A. Podelski, M. Schäf, and T. Wies, “It’s Doomed; We Can Prove It,” presented at the FM: Formal Methods, 2009, pp. 338–353.
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2009 | Conference Paper | IST-REx-ID: 4383 | OA
R. Guerraoui, T. A. Henzinger, and V. Singh, “Software transactional memory on relaxed memory models,” presented at the CAV: Computer Aided Verification, 2009, vol. 5643, pp. 321–336.
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2009 | Conference Paper | IST-REx-ID: 4385
A. Dragojevic, R. Guerraoui, A. Singh, and V. Singh, “Preventing versus curing: avoiding conflicts in transactional memories,” presented at the POPL: Principles of Programming Languages, 2009, pp. 7–16.
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2009 | Conference Paper | IST-REx-ID: 4391
P. Cerny and R. Alur, “Automated Analysis of Java Methods for Confidentiality,” presented at the CAV: Computer Aided Verification, 2009, pp. 173–187.
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2009 | Conference Paper | IST-REx-ID: 4403 | OA
R. Alur, P. Cerny, and S. Weinstein, “Algorithmic analysis of array-accessing programs,” presented at the CSL: Computer Science Logic, Coimbra, Portugal, 2009, vol. 5771, pp. 86–101.
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2009 | Journal Article | IST-REx-ID: 11105 | OA
M. Capelson and M. Hetzer, “The role of nuclear pores in gene regulation, development and disease,” EMBO reports, vol. 10, no. 7. EMBO, pp. 697–705, 2009.
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2009 | Journal Article | IST-REx-ID: 11107 | OA
T. R. Dawson, M. D. Lazarus, M. Hetzer, and S. R. Wente, “ER membrane–bending proteins are necessary for de novo nuclear pore formation,” Journal of Cell Biology, vol. 184, no. 5. Rockefeller University Press, pp. 659–675, 2009.
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2009 | Journal Article | IST-REx-ID: 11103 | OA
M. Hetzer and S. R. Wente, “Border control at the nucleus: Biogenesis and organization of the nuclear membrane and pore complexes,” Developmental Cell, vol. 17, no. 5. Elsevier, pp. 606–616, 2009.
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2009 | Journal Article | IST-REx-ID: 11108 | OA
M. A. D’Angelo, M. Raices, S. H. Panowski, and M. Hetzer, “Age-dependent deterioration of nuclear pore complexes causes a loss of nuclear integrity in postmitotic cells,” Cell, vol. 136, no. 2. Elsevier, pp. 284–295, 2009.
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2009 | Journal Article | IST-REx-ID: 11106 | OA
D. J. Anderson, J. D. Vargas, J. P. Hsiao, and M. Hetzer, “Recruitment of functionally distinct membrane proteins to chromatin mediates nuclear envelope formation in vivo,” Journal of Cell Biology, vol. 186, no. 2. Rockefeller University Press, pp. 183–191, 2009.
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2009 | Conference Paper | IST-REx-ID: 11752
X. Yang et al., “Influence of magnetic fields on structural martensitic transitions,” in Journal of Physics: Conference Series, Karlsruhe, Germany, 2009, vol. 200, no. 3.
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2009 | Journal Article | IST-REx-ID: 7080
X.-D. Yang et al., “Influence of magnetic fields on structural martensitic transitions,” Philosophical Magazine, vol. 89, no. 22–24. Taylor & Francis, pp. 2083–2091, 2009.
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2008 | Journal Article | IST-REx-ID: 2795
B. Hof, A. De Lózar, D. Kuik, and J. Westerweel, “Repeller or attractor? Selecting the dynamical model for the onset of turbulence in pipe flow,” Physical Review Letters, vol. 101, no. 21. American Physical Society, 2008.
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2008 | Journal Article | IST-REx-ID: 2892
R. Azevedo, R. Lohaus, and T. Paixao, “Networking networks,” Evolution & Development, vol. 10, no. 5. Wiley-Blackwell, pp. 514–515, 2008.
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2008 | Journal Article | IST-REx-ID: 3030
E. Růčková, J. Friml, P. Procházková Schrumpfová, and J. Fajkus, “Role of alternative telomere lengthening unmasked in telomerase knock-out mutant plants,” Plant Molecular Biology, vol. 66, no. 6. Springer, pp. 637–646, 2008.
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2008 | Journal Article | IST-REx-ID: 3031
P. Dhonukshe et al., “Auxin transport inhibitors impair vesicle motility and actin cytoskeleton dynamics in diverse eukaryotes,” PNAS, vol. 105, no. 11. National Academy of Sciences, pp. 4489–4494, 2008.
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2008 | Journal Article | IST-REx-ID: 3032
J. Kleine Vehn et al., “ARF GEF dependent transcytosis and polar delivery of PIN auxin carriers in Arabidopsis,” Current Biology, vol. 18, no. 7. Cell Press, pp. 526–531, 2008.
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2008 | Book Chapter | IST-REx-ID: 3033
M. Sauer and J. Friml, “Visualization of auxin gradients in embryogenesis ,” in Plant Embryogenesis, vol. 427, M. Suárez and P. Bozhkov, Eds. Humana Press, 2008, pp. 137–144.
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2008 | Journal Article | IST-REx-ID: 3034
J. Friml and M. Sauer, “Plant biology: In their neighbour’s shadow,” Nature, vol. 453, no. 7193. Nature Publishing Group, pp. 298–299, 2008.
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2008 | Book Chapter | IST-REx-ID: 3035
M. Sauer and J. Friml, “In vitro culture of Arabidopsis embryos ,” in Plant Embryogenesis, vol. 427, M. Suárez and P. Bozhkov, Eds. Humana Press, 2008, pp. 71–76.
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2008 | Journal Article | IST-REx-ID: 3036
J. Dubrovsky et al., “Auxin acts as a local morphogenetic trigger to specify lateral root founder cells,” PNAS, vol. 105, no. 25. National Academy of Sciences, pp. 8790–8794, 2008.
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2008 | Journal Article | IST-REx-ID: 3037 | OA
E. Feraru and J. Friml, “PIN polar targeting,” Plant Physiology, vol. 147, no. 4. American Society of Plant Biologists, pp. 1553–1559, 2008.
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2008 | Journal Article | IST-REx-ID: 3038
Swarup K, Benková E, Swarup R, Casimiro I, Péret B, Yang Y, Parry G, Nielsen E, De Smet I, Vanneste S, Levesque M, Carrier D, James N, Calvo V, Ljung K, Kramer E, Roberts R, Graham N, Marillonnet S, Patel K, Jones J, Taylor C, Schachtman D, May S, Sandberg G, Benfey P, Friml J, Kerr I, Beeckman T, Laplaze L, Bennett M. 2008. The auxin influx carrier LAX3 promotes lateral root emergence. Nature Cell Biology. 10(8), 946–954.
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2008 | Journal Article | IST-REx-ID: 3039
I. De Smet et al., “Receptor-like kinase ACR4 restricts formative cell divisions in the Arabidopsis root,” Science, vol. 322, no. 5901. American Association for the Advancement of Science, pp. 594–597, 2008.
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2008 | Journal Article | IST-REx-ID: 3040
J. Kleine Vehn, Ł. Łangowski, J. Wiśniewska, P. Dhonukshe, P. Brewer, and J. Friml, “Cellular and molecular requirements for polar PIN targeting and transcytosis in plants,” Molecular Plant, vol. 1, no. 6. Oxford University Press, pp. 1056–1066, 2008.
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2008 | Journal Article | IST-REx-ID: 3041
D. Santelia et al., “Flavonoids redirect PIN mediated polar auxin fluxes during root gravitropic responses,” Journal of Biological Chemistry, vol. 283, no. 45. American Society for Biochemistry and Molecular Biology, pp. 31218–31226, 2008.
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2008 | Journal Article | IST-REx-ID: 3042
J. Kleine Vehn et al., “Differential degradation of PIN2 auxin efflux carrier by retromer dependent vacuolar targeting,” PNAS, vol. 105, no. 46. National Academy of Sciences, pp. 17812–17817, 2008.
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2008 | Journal Article | IST-REx-ID: 3043
J. Kleine Vehn and J. Friml, “Polar targeting and endocytic recycling in auxin-dependent plant development,” Annual Review of Cell and Developmental Biology, vol. 24. Annual Reviews, pp. 447–473, 2008.
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2008 | Journal Article | IST-REx-ID: 3044
J. Mravec et al., “Interaction of PIN and PGP transport mechanisms in auxin distribution-dependent development,” Development, vol. 135, no. 20. Company of Biologists, pp. 3345–3354, 2008.
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2008 | Journal Article | IST-REx-ID: 3045
P. Dhonukshe et al., “Generation of cell polarity in plants links endocytosis auxin distribution and cell fate decisions,” Nature, vol. 456, no. 7224. Nature Publishing Group, pp. 962–966, 2008.
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2008 | Conference Paper | IST-REx-ID: 3194
P. Kohli, A. Shekhovtsov, C. Rother, V. Kolmogorov, and P. Torr, “On partial optimality in multi label MRFs,” presented at the ICML: International Conference on Machine Learning, 2008, pp. 480–487.
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2008 | Conference Paper | IST-REx-ID: 3195
S. Vicente, V. Kolmogorov, and C. Rother, “Graph cut based image segmentation with connectivity priors,” presented at the CVPR: Computer Vision and Pattern Recognition, 2008.
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2008 | Journal Article | IST-REx-ID: 3196
R. Szeliski et al., “A comparative study of energy minimization methods for Markov random fields with smoothness-based priors,” IEEE Transactions on Pattern Analysis and Machine Intelligence, vol. 30, no. 6. IEEE, pp. 1068–1080, 2008.
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2008 | Conference Paper | IST-REx-ID: 3198
L. Torresani, V. Kolmogorov, and C. Rother, “Feature correspondence via graph matching: Models and global optimization,” presented at the ECCV: European Conference on Computer Vision, 2008, vol. 5303, pp. 596–609.
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2008 | Conference Paper | IST-REx-ID: 3224
Y. Dodis, K. Z. Pietrzak, and P. Puniya, “A new mode of operation for block ciphers and length preserving MACs,” presented at the EUROCRYPT: Theory and Applications of Cryptographic Techniques, 2008, vol. 4965, pp. 198–219.
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2008 | Conference Paper | IST-REx-ID: 3225
M. Fischlin, A. Lehmann, and K. Z. Pietrzak, “Robust multi property combiners for hash functions revisited,” presented at the ICALP: Automata, Languages and Programming, 2008, vol. 5126, no. PART 2, pp. 655–666.
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2008 | Conference Paper | IST-REx-ID: 3226
K. Z. Pietrzak and J. Sjödin, “Weak pseudorandom functions in minicrypt,” presented at the ICALP: Automata, Languages and Programming, 2008, vol. 5126, no. PART 2, pp. 423–436.
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2008 | Journal Article | IST-REx-ID: 3227
P. Zubielik, J. Nadaczny, K. Z. Pietrzak, and M. Lawenda, “Elektrowiz – system of measurement data management,” Przeglad Elektrotechniczny, vol. 84, no. 10. SIGMA-NOT, pp. 239–242, 2008.
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2008 | Conference Paper | IST-REx-ID: 3228
K. Z. Pietrzak, “Compression from collisions or why CRHF combiners have a long output,” presented at the CRYPTO: International Cryptology Conference, 2008, vol. 5157, pp. 413–432.
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2008 | Conference Paper | IST-REx-ID: 3229
S. Dziembowski and K. Z. Pietrzak, “Leakage resilient cryptography,” presented at the FOCS: Foundations of Computer Science, 2008, pp. 293–302.
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2008 | Journal Article | IST-REx-ID: 3291
P. S. Schmalhorst et al., “Contribution of galactofuranose to the virulence of the opportunistic pathogen Aspergillus fumigatus,” Eukaryotic Cell, vol. 7, no. 8. American Society for Microbiology, pp. 1268–1277, 2008.
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2008 | Journal Article | IST-REx-ID: 3307 | OA
Green R, Malaspinas A, Krause J, Briggs A, Johnson P, Uhler C, Meyer M, Good J, Maricic T, Stenzel U, Prüfer K, Siebauer M, Burbano H, Ronan M, Rothberg J, Egholm M, Rudan P, Brajković D, Kućan Ž, Gušić I, Wikström M, Laakkonen L, Kelso J, Slatkin M, Pääbo S. 2008. A complete neandertal mitochondrial genome sequence determined by highhhroughput sequencing. Cell. 134, 416–426.
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2008 | Journal Article | IST-REx-ID: 3409
J. Struckmeier et al., “Fully automated single-molecule force spectroscopy for screening applications,” Nanotechnology, vol. 19, no. 38. IOP Publishing Ltd., 2008.
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2008 | Book Review | IST-REx-ID: 3410
H. L. Janovjak, T. Sapra, A. Kedrov, and D. Mueller, “From valleys to ridges: Exploring the energy landscape of single membrane proteins,” ChemPhysChem, vol. 9, no. 7. Wiley-Blackwell, pp. 954–966, 2008.
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2008 | Journal Article | IST-REx-ID: 844
S. Schmidt, A. Gerasimova, F. Kondrashov, I. Adzuhbei, A. Kondrashov, and S. Sunyaev, “Hypermutable non-synonymous sites are under stronger negative selection,” PLoS Genetics, vol. 4, no. 11. Public Library of Science, 2008.
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2008 | Journal Article | IST-REx-ID: 8480
P. Schanda, B. Brutscher, R. Konrat, and M. Tollinger, “Folding of the KIX domain: Characterization of the equilibrium analog of a folding intermediate using 15N/13C relaxation dispersion and fast 1H/2H amide exchange NMR spectroscopy,” Journal of Molecular Biology, vol. 380, no. 4. Elsevier, pp. 726–741, 2008.
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2008 | Journal Article | IST-REx-ID: 8481
B. Bersch et al., “Molecular structure and metal-binding properties of the periplasmic CopK protein expressed in Cupriavidus metallidurans CH34 during copper challenge,” Journal of Molecular Biology, vol. 380, no. 2. Elsevier, pp. 386–403, 2008.
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2008 | Journal Article | IST-REx-ID: 8482
T. Kern, P. Schanda, and B. Brutscher, “Sensitivity-enhanced IPAP-SOFAST-HMQC for fast-pulsing 2D NMR with reduced radiofrequency load,” Journal of Magnetic Resonance, vol. 190, no. 2. Elsevier, pp. 333–338, 2008.
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2008 | Journal Article | IST-REx-ID: 8509
V. Kaloshin and M. Levi, “Geometry of Arnold diffusion,” SIAM Review, vol. 50, no. 4. Society for Industrial & Applied Mathematics, pp. 702–720, 2008.
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