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6699 Publications


2007 | Journal Article | IST-REx-ID: 3976
Headd, Jeffrey, Y E Andrew Ban, Paul Brown, Herbert Edelsbrunner, Madhuwanti Vaidya, and Johannes Rudolph. “Protein-Protein Interfaces: Properties, Preferences, and Projections.” Journal of Proteome Research. American Chemical Society, 2007. https://doi.org/10.1021/pr070018+.
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2007 | Journal Article | IST-REx-ID: 3977
Attali, Dominique, and Herbert Edelsbrunner. “Inclusion-Exclusion Formulas from Independent Complexes.” Discrete & Computational Geometry. Springer, 2007. https://doi.org/10.1007/s00454-006-1274-7.
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2007 | Conference Paper | IST-REx-ID: 3981
Attali, Dominique, Herbert Edelsbrunner, John Harer, and Yuriy Mileyko. “Alpha-Beta Witness Complexes,” 4619:386–97. Springer, 2007. https://doi.org/10.1007/978-3-540-73951-7_34.
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2007 | Journal Article | IST-REx-ID: 4152
Rohde, Laurel, and Carl-Philipp J Heisenberg. “Zebrafish Gastrulation: Cell Movements, Signals, and Mechanisms.” International Review of Cytology - A Survey of Cell Biology. Academic Press, 2007. https://doi.org/10.1016/S0074-7696(07)61004-3.
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2007 | Journal Article | IST-REx-ID: 4182
Krieg, Michael, Yohanna Arboleda, Daniel Müller, and Carl-Philipp J Heisenberg. “The Role of Cell Adhesion and Contractility for Germ Layer Morphogenesis during Zebrafish Gastrulation.” European Journal of Cell Biology. Elsevier, 2007. https://doi.org/10.1016/j.ejcb.2007.02.002.
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2007 | Journal Article | IST-REx-ID: 4205
Von Der Hardt, Sophia, Jeroen Bakkers, Adi Inbal, Lara Carvalho, Lilianna Solnica Krezel, Carl-Philipp J Heisenberg, and Matthias Hammerschmidt. “The Bmp Gradient of the Zebrafish Gastrula Guides Migrating Lateral Cells by Regulating Cell-Cell Adhesion.” Current Biology. Cell Press, 2007. https://doi.org/10.1016/j.cub.2007.02.013.
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2007 | Journal Article | IST-REx-ID: 4225
Bollenbach, Mark Tobias, Kalin Vetsigian, and Roy Kishony. “Evolution and Multilevel Optimization of the Genetic Code.” Genome Research. Cold Spring Harbor Laboratory Press, 2007. https://doi.org/10.1101/gr.6144007.
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2007 | Journal Article | IST-REx-ID: 4226
Kicheva, Anna, Periklis Pantazis, Tobias Bollenbach, Yannis Kalaidzidis, Thomas Bittig, Frank Julicher, and Marcos Gonzalez Gaitan. “Kinetics of Morphogen Gradient Formation.” Science. American Association for the Advancement of Science, 2007. https://doi.org/10.1126/science.1135774.
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2007 | Conference Paper | IST-REx-ID: 4233
Vladar, Harold de. “Alternativas Prebióticas Para La Síntesis de Amino- Ácidos y Otras Moléculas Relacionadas.” edited by N. Falcón and Y. Loyo De Sardi, 91–109. Consejo de Desarrollo Cientifico y Tecnologico, 2007. https://doi.org/3808.
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2007 | Journal Article | IST-REx-ID: 4234 | OA
Vladar, Harold de, and I. Pen. “Determinism, Noise, and Spurious Estimations in a Generalised Model of Population Growth.” Physica A. Elsevier, 2007. https://doi.org/10.1016/j.physa.2006.06.025.
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2007 | Journal Article | IST-REx-ID: 4246
Free, Andrew, and Nicholas H Barton. “Do Evolution and Ecology Need the Gaia Hypothesis?” Trends in Ecology and Evolution. Cell Press, 2007. https://doi.org/10.1016/j.tree.2007.07.007.
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2007 | Journal Article | IST-REx-ID: 4247
Gardner, Andy, Stuart West, and Nicholas H Barton. “The Relation between Multilocus Population Genetics and Social Evolution Theory.” American Naturalist. University of Chicago Press, 2007. https://doi.org/10.1086/510602.
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2007 | Conference Paper | IST-REx-ID: 4342
Danowski, Patrick. “Library 2.0 and User-Generated Content - What Can the Users Do for Us?” IFLA, 2007. https://doi.org/601.
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2007 | Journal Article | IST-REx-ID: 4343
Danowski, Patrick, and Barbara Pfeifer. “Wikipedia Und Normdateien: Wege Der Vernetzung Am Beispiel Der Kooperation Mit Der Personennamendatei.” Bibliothek - Forschung Und Praxis. De Gruyter, 2007. https://doi.org/485.
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2007 | Journal Article | IST-REx-ID: 4344
Danowski, Patrick, and Lambert Heller. “Bibliothek 2.0 ? Wird Alles Anders?” Bibliothek - Forschung Und Praxis. De Gruyter, 2007. https://doi.org/45.
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2007 | Journal Article | IST-REx-ID: 4353
Binladen, Jonas, M Thomas Gilbert, Jonathan P Bollback, Frank Panitz, Christian Bendixen, Rasmus Nielsen, and Eske Willerslev. “The Use of Coded PCR Primers Enables High-Throughput Sequencing of Multiple Homolog Amplification Products by 454 Parallel Sequencing.” PLoS One. Public Library of Science, 2007. https://doi.org/10.1371/journal.pone.0000197.
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2007 | Journal Article | IST-REx-ID: 4354
Freyhult, Eva, Jonathan P Bollback, and Paul Gardner. “Exploring Genomic Dark Matter: A Critical Assessment of the Performance of Homology Search Methods on Noncoding RNA.” Genome Research. Cold Spring Harbor Laboratory Press, 2007. https://doi.org/10.1101/gr.5890907.
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2007 | Journal Article | IST-REx-ID: 4355
Bollback, Jonathan P, and John Huelsenbeck. “Clonal Interference Is Alleviated by High Mutation Rates in Large Populations.” Molecular Biology and Evolution. Oxford University Press, 2007. https://doi.org/10.1093/molbev/msm056.
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2007 | Journal Article | IST-REx-ID: 4356
Petersen, Lise, Jonathan P Bollback, Matt Dimmic, Melissa Hubisz, and Rasmus Nielsen. “Genes under Positive Selection in Escherichia Coli.” Genome Research. Cold Spring Harbor Laboratory Press, 2007. https://doi.org/10.1101/gr.6254707.
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2007 | Conference Paper | IST-REx-ID: 4368
Nickovic, Dejan, and Oded Maler. “AMT: A Property-Based Monitoring Tool for Analog Systems,” 304–19. Springer, 2007. https://doi.org/1567.
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2007 | Conference Paper | IST-REx-ID: 4370
Maler, Oded, Dejan Nickovic, and Amir Pnueli. “On Synthesizing Controllers from Bounded-Response Properties,” 95–107. Springer, 2007. https://doi.org/1568.
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2007 | Conference Paper | IST-REx-ID: 4394
Bouillaguet, Charles, Viktor Kuncak, Thomas Wies, Karen Zee, and Martin Rinard. “Using First-Order Theorem Provers in the Jahob Data Structure Verification System,” 74–88. Springer, 2007. https://doi.org/1552.
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2007 | Conference Paper | IST-REx-ID: 4398
Berdine, Josh, Cristiano Calcagno, Byron Cook, Dino Distefano, Peter O’Hearn, Thomas Wies, and Hongseok Yang. “Shape Analysis for Composite Data Structures,” 178–92. Springer, 2007. https://doi.org/1553.
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2007 | Conference Paper | IST-REx-ID: 4399
Beyer, Dirk, Thomas A Henzinger, and Vasu Singh. “Algorithms for Interface Synthesis,” 4590:4–19. Springer, 2007. https://doi.org/10.1007/978-3-540-73368-3_4.
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2007 | Conference Paper | IST-REx-ID: 4402
Alur, Rajeev, Pavol Cerny, and Swarat Chaudhuri. “Model Checking on Trees with Path Equivalences,” 664–78. Springer, 2007. https://doi.org/1544.
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2007 | Journal Article | IST-REx-ID: 4405
Schaub, Marc, Thomas A Henzinger, and Jasmin Fisher. “Qualitative Networks: A Symbolic Approach to Analyze Biological Signaling Networks.” BMC Systems Biology. BioMed Central, 2007. https://doi.org/10.1186/1752-0509-1-4.
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2007 | Book Chapter | IST-REx-ID: 4417
Manevich, Roman, John Field, Thomas A Henzinger, Ganesan Ramalingam, and Mooly Sagiv. “Abstract Counterexample-Based Refinement for Powerset Domains.” In Program Analysis and Compilation, Theory and Practice: Essays Dedicated to Reinhard Wilhelm on the Occasion of His 60th Birthday, 4444:273–92. Springer, 2007. https://doi.org/10.1007/978-3-540-71322-7_13.
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2007 | Journal Article | IST-REx-ID: 4446
Henzinger, Thomas A, and Christoph Kirsch. “The Embedded Machine: Predictable, Portable Real-Time Code.” ACM Transactions on Programming Languages and Systems (TOPLAS). ACM, 2007. https://doi.org/10.1145/1286821.1286824.
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2007 | Conference Paper | IST-REx-ID: 4511
Henzinger, Thomas A. “Quantitative Generalizations of Languages,” 4588:20–22. Springer, 2007. https://doi.org/10.1007/978-3-540-73208-2_2.
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2007 | Conference Paper | IST-REx-ID: 4514
Henzinger, Thomas A. “Games, Time, and Probability: Graph Models for System Design and Analysis,” 4362:103–10. Springer, 2007. https://doi.org/10.1007/978-3-540-69507-3_7.
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2007 | Journal Article | IST-REx-ID: 4529
Fisher, Jasmin, and Thomas A Henzinger. “Executable Cell Biology.” Nature Biotechnology. Nature Publishing Group, 2007. https://doi.org/10.1038/nbt1356.
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2007 | Conference (Editor) | IST-REx-ID: 4530
Duparc, Jacques, and Thomas A Henzinger. CSL: Computer Science Logic . CSL: Computer Science Logic. Vol. 4646. Springer, 2007. https://doi.org/10.1007/978-3-540-74915-8.
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2007 | Journal Article | IST-REx-ID: 4531
Fisher, Jasmin, Nir Piterman, Alex Hajnal, and Thomas A Henzinger. “Predictive Modeling of Signaling Crosstalk during C. Elegans Vulval Development.” PLoS Computational Biology. Public Library of Science, 2007. https://doi.org/10.1371/journal.pcbi.0030092.
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2007 | Conference Paper | IST-REx-ID: 4537
Chatterjee, Krishnendu, and Thomas A Henzinger. “Assume-Guarantee Synthesis,” 4424:261–75. Springer, 2007. https://doi.org/10.1007/978-3-540-71209-1_21.
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2007 | Journal Article | IST-REx-ID: 4547
Chatterjee, Krishnendu, Laurent Doyen, Thomas A Henzinger, and Jean Raskin. “Algorithms for Omega-Regular Games with Imperfect Information.” Logical Methods in Computer Science. International Federation of Computational Logic, 2007. https://doi.org/10.2168/LMCS-3(3:4)2007.
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2007 | Thesis | IST-REx-ID: 4559
Chatterjee, Krishnendu. “Stochastic ω-Regular Games.” University of California, Berkeley, 2007.
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2007 | Thesis | IST-REx-ID: 4566
Chakrabarti, Arindam. “A Framework for Compositional Design and Analysis of Systems.” University of California, Berkeley, 2007.
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2007 | Journal Article | IST-REx-ID: 4567
Beyer, Dirk, Thomas A Henzinger, Ranjit Jhala, and Ritankar Majumdar. “The Software Model Checker BLAST: Applications to Software Engineering.” International Journal on Software Tools for Technology Transfer. Springer, 2007. https://doi.org/10.1007/s10009-007-0044-z.
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2007 | Conference Paper | IST-REx-ID: 4570
Brihaye, Thomas, Thomas A Henzinger, Vinayak Prabhu, and Jean Raskin. “Minimum-Time Reachability in Timed Games,” 4596:825–37. Springer, 2007. https://doi.org/10.1007/978-3-540-73420-8_71.
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2007 | Conference Paper | IST-REx-ID: 4571
Beyer, Dirk, Thomas A Henzinger, Ritankar Majumdar, and Andrey Rybalchenko. “Path Invariants,” 300–309. ACM, 2007. https://doi.org/10.1145/1250734.1250769.
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2007 | Conference Paper | IST-REx-ID: 4572
Beyer, Dirk, Thomas A Henzinger, Ritankar Majumdar, and Andrey Rybalchenko. “Invariant Synthesis for Combined Theories,” 4349:378–94. Springer, 2007. https://doi.org/10.1007/978-3-540-69738-1_27.
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2007 | Conference Paper | IST-REx-ID: 4573
Beyer, Dirk, Thomas A Henzinger, and Grégory Théoduloz. “Configurable Software Verification: Concretizing the Convergence of Model Checking and Program Analysis,” 4590:504–18. Springer, 2007. https://doi.org/10.1007/978-3-540-73368-3_51.
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2007 | Conference Paper | IST-REx-ID: 4575
Beyer, Dirk, Arindam Chakrabarti, Thomas A Henzinger, and Sanjit Seshia. “An Application of Web-Service Interfaces,” 831–38. IEEE, 2007. https://doi.org/10.1109/ICWS.2007.32 .
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2007 | Journal Article | IST-REx-ID: 3019
Blakeslee, Joshua, Anindita Bandyopadhyay, Ran Ok, Jozef Mravec, Boosaree Titapiwatanakun, Michael Sauer, Srinivas Makam, et al. “Interactions among PIN FORMED and P Glycoprotein Auxin Transporters in Arabidopsis.” Plant Cell. American Society of Plant Biologists, 2007. https://doi.org/10.1105/tpc.106.040782.
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2007 | Conference Paper | IST-REx-ID: 3021
Bandyopadhyay, Anindita, Joshua Blakeslee, Ok Lee, Jozef Mravec, Michael Sauer, Boosaree Titapiwatanakun, Srinivas Makam, et al. “Interactions of PIN and PGP Auxin Transport Mechanisms,” 35:137–41. Portland Press, 2007. https://doi.org/10.1042/BST0350137.
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2007 | Journal Article | IST-REx-ID: 3022
Dhonukshe, Pankaj, Fernando Aniento, Inhwan Hwang, David Robinson, Jozef Mravec, York Stierhof, and Jiří Friml. “Clathrin-Mediated Constitutive Endocytosis of PIN Auxin Efflux Carriers in Arabidopsis.” Current Biology. Cell Press, 2007. https://doi.org/10.1016/j.cub.2007.01.052.
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2007 | Journal Article | IST-REx-ID: 3023
Dhonukshe, Pankaj, Jozef Šamaj, František Baluška, and Jiří Friml. “A Unifying New Model of Cytokinesis for the Dividing Plant and Animal Cells.” Bioessays : News and Reviews in Molecular, Cellular and Developmental Biology. Wiley-Blackwell, 2007. https://doi.org/10.1002/bies.20559.
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2007 | Journal Article | IST-REx-ID: 3024
Vieten, Anne, Michael Sauer, Philip Brewer, and Jiří Friml. “Molecular and Cellular Aspects of Auxin-Transport-Mediated Development.” Trends in Plant Science. Cell Press, 2007. https://doi.org/10.1016/j.tplants.2007.03.006.
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2007 | Journal Article | IST-REx-ID: 3025
Sauer, Michael, Jozef Balla, Christian Luschnig, Justyna Wiśniewska, Vilém Reinöhl, Jiří Friml, and Eva Benková. “Erratum: Canalization of Auxin Flow by Aux/IAA-ARF-Dependent Feedback Regulation of PIN Polarity (Genes and Development (2006) 20 (2902-2911)).” Genes and Development. Cold Spring Harbor Laboratory Press, 2007.
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2007 | Journal Article | IST-REx-ID: 3026
Růžička, Kamil, Karin Ljung, Steffen Vanneste, Radka Podhorská, Tom Beeckman, Jiří Friml, and Eva Benková. “Ethylene Regulates Root Growth through Effects on Auxin Biosynthesis and Transport Dependent Auxin Distribution.” Plant Cell. American Society of Plant Biologists, 2007. https://doi.org/10.1105/tpc.107.052126.
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