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6283 Publications


2005 | Journal Article | IST-REx-ID: 3721 | OA
Janovjak HL, Mueller D, Humphris A. 2005. Molecular force modulation spectroscopy revealing the dynamic response of single bacteriorhodopsins. Biophysical Journal. 88(2), 1423–1431.
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2005 | Journal Article | IST-REx-ID: 3741 | OA
Slonim N, Atwal G, Tkačik G, Bialek W. 2005. Information-based clustering. PNAS. 102(51), 18297–18302.
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2005 | Preprint | IST-REx-ID: 3746 | OA
Slonim N, Atwal G, Tkačik G, Bialek W. 2005. Estimating mutual information and multi-information in large networks. ArXiv, 1–11, .
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2005 | Journal Article | IST-REx-ID: 3753
Le T, Harlepp S, Guet CC, Dittmar K, Emonet T, Pan T, Cluzel P. 2005. Real-time RNA profiling within a single bacterium. PNAS. 102(26), 9160–9164.
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2005 | Journal Article | IST-REx-ID: 3763
Shi L, Yu Y, Wojtan CJ, Chenney S. 2005. Controllable motion synthesis in a gaseous medium. The Visual Computer. 21(7), 474–487.
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2005 | Journal Article | IST-REx-ID: 3808
Engel D, Jonas PM. 2005. Presynaptic action potential amplification by voltage-gated Na+ channels in hippocampal mossy fiber boutons. Neuron. 45(3), 405–17.
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2005 | Book Review | IST-REx-ID: 3812
Hefft S, Jonas PM. 2005. Asynchronous GABA release generates long-lasting inhibition at a hippocampal interneuron-principal neuron synapse (Review). Nature Neuroscience. 8(10), 1319–28.
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2005 | Conference Paper | IST-REx-ID: 3892
Chatterjee K, Henzinger TA, Jurdziński M. 2005. Games with secure equilibria. FMCO: Formal Methods for Components and Objects, LNCS, vol. 3657, 141–161.
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2005 | Conference Paper | IST-REx-ID: 3893
Chatterjee K. 2005. Two-player nonzero-sum ω-regular games. CONCUR: Concurrency Theory, LNCS , vol. 3653, 413–427.
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2005 | Conference Paper | IST-REx-ID: 3896
Chatterjee K, Dasgupta P, Chakrabarti P. 2005. Complexity of compositional model checking of computation tree logic on simple structures. IWDC: International Workshop on Distributed Computing , LNCS, vol. 3326, 89–102.
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2005 | Conference Paper | IST-REx-ID: 3902
Cremer S, Boomsma J. 2005. The drawback of mobility: invasive species in a globalised world. Marie Curie Conference.
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2005 | Journal Article | IST-REx-ID: 3915
De Menten L, Cremer S, Heinze J, Aron S. 2005. Primary sex ratio adjustment by ant queens in response to local mate competition. Animal Behaviour. 69(5), 1031–1035.
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2005 | Journal Article | IST-REx-ID: 3916
Schrempf A, Heinze J, Cremer S. 2005. Sexual cooperation: mating increases longevity in ant queens. Current Biology. 15(3), 267–270.
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2005 | Journal Article | IST-REx-ID: 3933
Sixt MK, Kanazawa N, Selg M, Samson T, Roos G, Reinhardt D, Pabst R, Lutz M, Sorokin L. 2005. The conduit system transports soluble antigens from the afferent lymph to resident dendritic cells in the T cell area of the lymph node. Immunity. 22(1), 19–29.
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2005 | Conference Paper | IST-REx-ID: 3982
Wang Y, Agarwal P, Brown P, Edelsbrunner H, Rudolph J. 2005. Coarse and reliable geometric alignment for protein docking. PSB: Pacific Symposium on Biocomputing, 64–75.
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2005 | Journal Article | IST-REx-ID: 3983
Sohn J, Parks J, Buhrman G, Brown P, Kristjánsdóttir K, Safi A, Edelsbrunner H, Yang W, Rudolph J. 2005. Experimental validation of the docking orientation of Cdc25 with its Cdk2-CycA protein substrate. Biochemistry. 44(50), 16563–16573.
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2005 | Journal Article | IST-REx-ID: 4138
Barton NH, Polechova J. 2005. The limitations of adaptive dynamics as a model of evolution. Journal of Evolutionary Biology. 18(5), 1186–1190.
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2005 | Journal Article | IST-REx-ID: 4144
Ulrich F, Krieg M, Schötz E, Link V, Castanon I, Schnabel V, Taubenberger A, Müller D, Puech P, Heisenberg C-PJ. 2005. Wnt11 functions in gastrulation by controlling cell cohesion through Rab5c and E-cadherin. Developmental Cell. 9(4), 555–564.
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2005 | Journal Article | IST-REx-ID: 4155
Puech P, Taubenberger A, Ulrich F, Krieg M, Mueller D, Heisenberg C-PJ. 2005. Measuring cell adhesion forces of primary gastrulating cells from zebrafish using atomic force microscopy. Journal of Cell Science. 118(18), 4199–4206.
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2005 | Journal Article | IST-REx-ID: 4167
Norton W, Mangoli M, Lele Z, Pogoda H, Diamond B, Mercurio S, Russell C, Teraoka H, Stickney H, Rauch G, Heisenberg C-PJ, Houart C, Schilling T, Frohnhoefer H, Rastegar S, Neumann C, Gardiner RM, Strähle U, Geisler R, Rees M, Talbot W, Wilson S. 2005. Monorail/Foxa2 regulates floorplate differentiation and specification of oligodendrocytes, serotonergic raphe neurones and cranial motoneurones. Development. 132(4), 645–658.
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2005 | Journal Article | IST-REx-ID: 4171
Montero J, Carvalho L, Wilsch Bräuninger M, Kilian B, Mustafa C, Heisenberg C-PJ. 2005. Shield formation at the onset of zebrafish gastrulation. Development. 132(6), 1187–1198.
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2005 | Journal Article | IST-REx-ID: 4183
Köppen M, Fernández B, Carvalho L, Jacinto A, Heisenberg C-PJ. 2005. Misshapen mediates actin-based cell contraction during zebrafish epiboly and Drosophila dorsal closure. Mechanisms of Development. 122(Supplement 1), S112–S113.
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2005 | Journal Article | IST-REx-ID: 4249
Polechova J, Barton NH. 2005. Speciation through competition: A critical review. Evolution; International Journal of Organic Evolution. 59(6), 1194–1210.
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2005 | Journal Article | IST-REx-ID: 4251
Barton NH, Otto S. 2005. Evolution of recombination due to random drift. Genetics. 169(4), 2353–2370.
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2005 | Journal Article | IST-REx-ID: 4252 | OA
Johnson T, Barton NH. 2005. Theoretical models of selection and mutationon quantitative traits. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 360(1459), 1411–1425.
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2005 | Conference Paper | IST-REx-ID: 4367
Podelski A, Wies T. 2005. Boolean Heaps. SAS: Static Analysis Symposium, LNCS 3672, , 267–282.
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2005 | Conference Paper | IST-REx-ID: 4404
Alur R, Cerny P, Madhusudan P, Nam W. 2005. Synthesis of interface specifications for Java classes. POPL: Principles of Programming Languages, 98–109.
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2005 | Conference Paper | IST-REx-ID: 4412
Matic S, Henzinger TA. 2005. Trading end-to-end latency for composability. RTSS: Real-Time Systems Symposium, 99–110.
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2005 | Conference Paper | IST-REx-ID: 4418
Kirsch C, Sanvido M, Henzinger TA. 2005. A programmable microkernel for real-time systems. VEE: Virtual Execution Environments, 35–45.
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2005 | Journal Article | IST-REx-ID: 4454
Henzinger TA, Majumdar R, Raskin J. 2005. A classification of symbolic transition systems. ACM Transactions on Computational Logic (TOCL). 6(1), 1–32.
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2005 | Conference Paper | IST-REx-ID: 4455
Henzinger TA, Majumdar R, Prabhu V. 2005. Quantifying similarities between timed systems. FORMATS: Formal Modeling and Analysis of Timed Systems, LNCS, vol. 3829, 226–241.
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2005 | Conference Paper | IST-REx-ID: 4456
Henzinger TA, Jhala R, Majumdar R. 2005. Permissive interfaces. FSE: Foundations of Software Engineering, 31–40.
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2005 | Conference Paper | IST-REx-ID: 4457
Henzinger TA, Kirsch C, Matic S. 2005. Composable code generation for distributed Giotto. LCTES: Languages, Compilers, and Tools for Embedded Systems, 21–30.
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2005 | Conference Paper | IST-REx-ID: 4536
Doyen L, Henzinger TA, Raskin J. 2005. Automatic rectangular refinement of affine hybrid systems. FORMATS: Formal Modeling and Analysis of Timed Systems, LNCS, vol. 3829, 144–161.
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2005 | Conference Paper | IST-REx-ID: 4541
Chatterjee K, Henzinger TA. 2005. Semiperfect-information games. FSTTCS: Foundations of Software Technology and Theoretical Computer Science, LNCS, vol. 3821, 1–18.
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2005 | Conference Paper | IST-REx-ID: 4553
Chatterjee K, De Alfaro L, Henzinger TA. 2005. The complexity of stochastic Rabin and Streett games. ICALP: Automata, Languages and Programming, LNCS, vol. 3580, 878–890.
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2005 | Conference Paper | IST-REx-ID: 4554
Chatterjee K, Henzinger TA, Jurdziński M. 2005. Mean-payoff parity games. LICS: Logic in Computer Science, 178–187.
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2005 | Conference Paper | IST-REx-ID: 4557
Chatterjee K, Henzinger TA, Jhala R, Majumdar R. 2005. Counterexample-guided planning. UAI: Uncertainty in Artificial Intelligence, 104–111.
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2005 | Conference Paper | IST-REx-ID: 4560
Chakrabarti A, Chatterjee K, Henzinger TA, Kupferman O, Majumdar R. 2005. Verifying quantitative properties using bound functions. CHARME: Correct Hardware Design and Verification Methods, LNCS, vol. 3725, 50–64.
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2005 | Conference Paper | IST-REx-ID: 4576
Beyer D, Chakrabarti A, Henzinger TA. 2005. Web service interfaces. WWW: World Wide Web Conference, 148–159.
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2005 | Conference Paper | IST-REx-ID: 4579
Beyer D, Henzinger TA, Jhala R, Majumdar R. 2005. Checking memory safety with BLAST. FASE: Fundamental Approaches To Software Engineering, LNCS, vol. 3442, 2–18.
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2005 | Journal Article | IST-REx-ID: 3000
Dhonukshe P, Kleine Vehn J, Friml J. 2005. Cell polarity, auxin transport and cytoskeleton mediated division planes: Who comes first? Protoplasma. 226(1–2), 67–73.
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2005 | Journal Article | IST-REx-ID: 3001
Paciorek T, Zažímalová E, Ruthardt N, Petrášek J, Stierhof Y, Kleine Vehn J, Morris D, Emans N, Jürgens G, Geldner N, Friml J. 2005. Auxin inhibits endocytosis and promotes its own efflux from cells. Nature. 435(7046), 1251–1256.
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2005 | Journal Article | IST-REx-ID: 3003
Vieten A, Vanneste S, Wiśniewska J, Benková E, Benjamins R, Beeckman T, Luschnig C, Friml J. 2005. Functional redundancy of PIN proteins is accompanied by auxin-dependent cross-regulation of PIN expression. Development. 132(20), 4521–4531.
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2005 | Journal Article | IST-REx-ID: 3004
Weijers D, Sauer M, Meurette O, Friml J, Ljung K, Sandberg G, Hooykaas P, Offringa R. 2005. Maintenance of embryonic auxin distribution for apical basal patterning by PIN FORMED dependent auxin transport in Arabidopsis. Plant Cell. 17(9), 2517–2526.
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2005 | Journal Article | IST-REx-ID: 3141
Rodal A, Sokolova O, Robins D, Daugherty K, Hippenmeyer S, Riezman H, Grigorieff N, Goode B. 2005. Conformational changes in the Arp2 3 complex leading to actin nucleation. Nature Structural and Molecular Biology. 12(1), 26–31.
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2005 | Journal Article | IST-REx-ID: 3143
Hippenmeyer S, Vrieseling E, Sigrist M, Portmann T, Laengle C, Ladle D, Arber S. 2005. A developmental switch in the response of DRG neurons to ETS transcription factor signaling. PLoS Biology. 3(5), 0878–0890.
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2005 | Conference Paper | IST-REx-ID: 3175
Rother C, Kumar S, Kolmogorov V, Blake A. 2005. Digital tapestry. CVPR: Computer Vision and Pattern Recognition vol. 1, 589–596.
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2005 | Conference Paper | IST-REx-ID: 3176
Kolmogorov V, Criminisi A, Blake A, Cross G, Rother C. 2005. Bi-layer segmentation of binocular stereo video. CVPR: Computer Vision and Pattern Recognition, 1186–1186.
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2005 | Conference Paper | IST-REx-ID: 3181
Kolmogorov V, Wainwright M. 2005. On the optimality of tree reweighted max product message passing. UAI: Uncertainty in Artificial Intelligence, 316–323.
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