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6502 Publications


2007 | Conference Paper | IST-REx-ID: 3981
D. Attali, H. Edelsbrunner, J. Harer, and Y. Mileyko, “Alpha-beta witness complexes,” presented at the WADS: International Workshop on Algrithms and Data Structures, 2007, vol. 4619, pp. 386–397.
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2007 | Journal Article | IST-REx-ID: 4152
L. Rohde and C.-P. J. Heisenberg, “Zebrafish gastrulation: Cell movements, signals, and mechanisms,” International Review of Cytology - A Survey of Cell Biology, vol. 261. Academic Press, pp. 159–192, 2007.
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2007 | Journal Article | IST-REx-ID: 4182
M. Krieg, Y. Arboleda, D. Müller, and C.-P. J. Heisenberg, “The role of cell adhesion and contractility for germ layer morphogenesis during zebrafish gastrulation,” European Journal of Cell Biology, vol. 86, no. Supplement 1. Elsevier, pp. 39–39, 2007.
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2007 | Journal Article | IST-REx-ID: 4205
S. Von Der Hardt et al., “The Bmp gradient of the zebrafish gastrula guides migrating lateral cells by regulating cell-cell adhesion,” Current Biology, vol. 17, no. 6. Cell Press, pp. 475–487, 2007.
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2007 | Journal Article | IST-REx-ID: 4225
M. T. Bollenbach, K. Vetsigian, and R. Kishony, “Evolution and multilevel optimization of the genetic code,” Genome Research, vol. 17, no. 4. Cold Spring Harbor Laboratory Press, pp. 401–404, 2007.
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2007 | Journal Article | IST-REx-ID: 4226
A. Kicheva et al., “Kinetics of morphogen gradient formation,” Science, vol. 315, no. 5811. American Association for the Advancement of Science, pp. 521–525, 2007.
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2007 | Conference Paper | IST-REx-ID: 4233
H. de Vladar, “Alternativas prebióticas para la síntesis de amino- ácidos y otras moléculas relacionadas,” presented at the Ab Initio: Orígenes Del Universo, La Vida, Y La Inteligencia, 2007, pp. 91–109.
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2007 | Journal Article | IST-REx-ID: 4234 | OA
H. de Vladar and I. Pen, “Determinism, noise, and spurious estimations in a generalised model of population growth,” Physica A, vol. 373. Elsevier, pp. 477–485, 2007.
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2007 | Journal Article | IST-REx-ID: 4246
A. Free and N. H. Barton, “Do evolution and ecology need the Gaia hypothesis?,” Trends in Ecology and Evolution, vol. 22, no. 11. Cell Press, pp. 611–619, 2007.
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2007 | Journal Article | IST-REx-ID: 4247
A. Gardner, S. West, and N. H. Barton, “The relation between multilocus population genetics and social evolution theory,” American Naturalist, vol. 169, no. 2. University of Chicago Press, pp. 207–226, 2007.
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2007 | Conference Paper | IST-REx-ID: 4342
P. Danowski, “Library 2.0 and User-Generated Content - What can the users do for us?,” presented at the WLIC: World Library and Information Congress, Durban, South Africa, 2007.
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2007 | Journal Article | IST-REx-ID: 4343
P. Danowski and B. Pfeifer, “Wikipedia und Normdateien: Wege der Vernetzung am Beispiel der Kooperation mit der Personennamendatei,” Bibliothek - Forschung Und Praxis, vol. 31, no. 2. De Gruyter, pp. 149–155, 2007.
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2007 | Journal Article | IST-REx-ID: 4344
P. Danowski and L. Heller, “Bibliothek 2.0 ? Wird alles anders?,” Bibliothek - Forschung Und Praxis, vol. 31, no. 2007. De Gruyter, pp. 130–136, 2007.
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2007 | Journal Article | IST-REx-ID: 4353
J. Binladen et al., “The use of coded PCR primers enables high-throughput sequencing of multiple homolog amplification products by 454 parallel sequencing,” PLoS One, vol. 2, no. 2. Public Library of Science, 2007.
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2007 | Journal Article | IST-REx-ID: 4354
E. Freyhult, J. P. Bollback, and P. Gardner, “Exploring genomic dark matter: a critical assessment of the performance of homology search methods on noncoding RNA,” Genome Research, vol. 17, no. 1. Cold Spring Harbor Laboratory Press, pp. 117–25, 2007.
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2007 | Journal Article | IST-REx-ID: 4355
J. P. Bollback and J. Huelsenbeck, “Clonal interference is alleviated by high mutation rates in large populations,” Molecular Biology and Evolution, vol. 24, no. 6. Oxford University Press, pp. 1397–1406, 2007.
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2007 | Journal Article | IST-REx-ID: 4356
L. Petersen, J. P. Bollback, M. Dimmic, M. Hubisz, and R. Nielsen, “Genes under positive selection in Escherichia coli,” Genome Research, vol. 17, no. 9. Cold Spring Harbor Laboratory Press, pp. 1336–1343, 2007.
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2007 | Conference Paper | IST-REx-ID: 4368
D. Nickovic and O. Maler, “AMT: a property-based monitoring tool for analog systems,” presented at the FORMATS: Formal Modeling and Analysis of Timed Systems, 2007, pp. 304–319.
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2007 | Conference Paper | IST-REx-ID: 4370
O. Maler, D. Nickovic, and A. Pnueli, “On synthesizing controllers from bounded-response properties,” presented at the CAV: Computer Aided Verification, 2007, pp. 95–107.
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2007 | Conference Paper | IST-REx-ID: 4394
C. Bouillaguet, V. Kuncak, T. Wies, K. Zee, and M. Rinard, “Using First-Order Theorem Provers in the Jahob Data Structure Verification System,” presented at the VMCAI: Verification, Model Checking and Abstract Interpretation, 2007, pp. 74–88.
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2007 | Conference Paper | IST-REx-ID: 4398
J. Berdine et al., “Shape Analysis for Composite Data Structures,” presented at the CAV: Computer Aided Verification, 2007, pp. 178–192.
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2007 | Conference Paper | IST-REx-ID: 4399
D. Beyer, T. A. Henzinger, and V. Singh, “Algorithms for interface synthesis,” presented at the CAV: Computer Aided Verification, 2007, vol. 4590, pp. 4–19.
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2007 | Conference Paper | IST-REx-ID: 4402
R. Alur, P. Cerny, and S. Chaudhuri, “Model Checking on Trees with Path Equivalences,” presented at the TACAS: Tools and Algorithms for the Construction and Analysis of Systems, 2007, pp. 664–678.
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2007 | Journal Article | IST-REx-ID: 4405
M. Schaub, T. A. Henzinger, and J. Fisher, “Qualitative networks: A symbolic approach to analyze biological signaling networks,” BMC Systems Biology, vol. 1, no. 4. BioMed Central, 2007.
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2007 | Book Chapter | IST-REx-ID: 4417
R. Manevich, J. Field, T. A. Henzinger, G. Ramalingam, and M. Sagiv, “Abstract counterexample-based refinement for powerset domains,” in Program Analysis and Compilation, Theory and Practice: Essays Dedicated to Reinhard Wilhelm on the Occasion of His 60th Birthday, vol. 4444, Springer, 2007, pp. 273–292.
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2007 | Journal Article | IST-REx-ID: 4446
T. A. Henzinger and C. Kirsch, “The embedded machine: Predictable, portable real-time code,” ACM Transactions on Programming Languages and Systems (TOPLAS), vol. 29, no. 393. ACM, 2007.
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2007 | Conference Paper | IST-REx-ID: 4511
T. A. Henzinger, “Quantitative generalizations of languages,” presented at the DLT: Developments in Language Theory, 2007, vol. 4588, pp. 20–22.
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2007 | Conference Paper | IST-REx-ID: 4514
T. A. Henzinger, “Games, time, and probability: Graph models for system design and analysis,” presented at the SOFSEM: Current Trends in Theory and Practice of Computer Science, 2007, vol. 4362, pp. 103–110.
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2007 | Journal Article | IST-REx-ID: 4529
J. Fisher and T. A. Henzinger, “Executable cell biology,” Nature Biotechnology, vol. 25. Nature Publishing Group, pp. 1239–1249, 2007.
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2007 | Conference (Editor) | IST-REx-ID: 4530
J. Duparc and T. A. Henzinger, CSL: Computer Science Logic , vol. 4646. Springer, 2007.
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2007 | Journal Article | IST-REx-ID: 4531
J. Fisher, N. Piterman, A. Hajnal, and T. A. Henzinger, “Predictive modeling of signaling crosstalk during C. elegans vulval development,” PLoS Computational Biology, vol. 3(5):e92. Public Library of Science, 2007.
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2007 | Conference Paper | IST-REx-ID: 4537
K. Chatterjee and T. A. Henzinger, “Assume-guarantee synthesis,” presented at the TACAS: Tools and Algorithms for the Construction and Analysis of Systems, 2007, vol. 4424, pp. 261–275.
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2007 | Journal Article | IST-REx-ID: 4547
K. Chatterjee, L. Doyen, T. A. Henzinger, and J. Raskin, “Algorithms for omega-regular games with imperfect information,” Logical Methods in Computer Science, vol. 3, no. 184. International Federation of Computational Logic, pp. 1–23, 2007.
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2007 | Thesis | IST-REx-ID: 4559
K. Chatterjee, “Stochastic ω-Regular Games,” University of California, Berkeley, 2007.
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2007 | Thesis | IST-REx-ID: 4566
A. Chakrabarti, “A framework for compositional design and analysis of systems,” University of California, Berkeley, 2007.
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2007 | Journal Article | IST-REx-ID: 4567
D. Beyer, T. A. Henzinger, R. Jhala, and R. Majumdar, “The software model checker BLAST: Applications to software engineering,” International Journal on Software Tools for Technology Transfer, vol. 9, no. 5. Springer, pp. 505–525, 2007.
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2007 | Conference Paper | IST-REx-ID: 4570
T. Brihaye, T. A. Henzinger, V. Prabhu, and J. Raskin, “Minimum-time reachability in timed games,” presented at the ICALP: Automata, Languages and Programming, 2007, vol. 4596, pp. 825–837.
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2007 | Conference Paper | IST-REx-ID: 4571
D. Beyer, T. A. Henzinger, R. Majumdar, and A. Rybalchenko, “Path invariants,” presented at the PLDI: Programming Languages Design and Implementation, 2007, pp. 300–309.
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2007 | Conference Paper | IST-REx-ID: 4572
D. Beyer, T. A. Henzinger, R. Majumdar, and A. Rybalchenko, “Invariant synthesis for combined theories,” presented at the VMCAI: Verification, Model Checking and Abstract Interpretation, 2007, vol. 4349, pp. 378–394.
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2007 | Conference Paper | IST-REx-ID: 4573
D. Beyer, T. A. Henzinger, and G. Théoduloz, “Configurable software verification: Concretizing the convergence of model checking and program analysis,” presented at the CAV: Computer Aided Verification, 2007, vol. 4590, pp. 504–518.
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2007 | Conference Paper | IST-REx-ID: 4575
D. Beyer, A. Chakrabarti, T. A. Henzinger, and S. Seshia, “An application of web-service interfaces,” presented at the ICWS: International Conference on Web Service, 2007, pp. 831–838.
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2007 | Journal Article | IST-REx-ID: 3019
J. Blakeslee et al., “Interactions among PIN FORMED and P glycoprotein auxin transporters in Arabidopsis,” Plant Cell, vol. 19, no. 1. American Society of Plant Biologists, pp. 131–147, 2007.
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2007 | Conference Paper | IST-REx-ID: 3021
A. Bandyopadhyay et al., “Interactions of PIN and PGP auxin transport mechanisms,” presented at the Intercellular Signalling in Plants, 2007, vol. 35, no. 1, pp. 137–141.
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2007 | Journal Article | IST-REx-ID: 3022
P. Dhonukshe et al., “Clathrin-mediated constitutive endocytosis of PIN auxin efflux carriers in Arabidopsis,” Current Biology, vol. 17, no. 6. Cell Press, pp. 520–527, 2007.
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2007 | Journal Article | IST-REx-ID: 3023
P. Dhonukshe, J. Šamaj, F. Baluška, and J. Friml, “A unifying new model of cytokinesis for the dividing plant and animal cells,” Bioessays : News and Reviews in Molecular, Cellular and Developmental Biology, vol. 29, no. 4. Wiley-Blackwell, pp. 371–381, 2007.
View | DOI | PubMed | Europe PMC
 

2007 | Journal Article | IST-REx-ID: 3024
A. Vieten, M. Sauer, P. Brewer, and J. Friml, “Molecular and cellular aspects of auxin-transport-mediated development,” Trends in Plant Science, vol. 12, no. 4. Cell Press, pp. 160–168, 2007.
View | DOI | PubMed | Europe PMC
 

2007 | Journal Article | IST-REx-ID: 3025
M. Sauer et al., “Erratum: Canalization of auxin flow by Aux/IAA-ARF-dependent feedback regulation of PIN polarity (Genes and Development (2006) 20 (2902-2911)),” Genes and Development, vol. 21, no. 11. Cold Spring Harbor Laboratory Press, pp. 1431–1431, 2007.
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2007 | Journal Article | IST-REx-ID: 3026
K. Růžička et al., “Ethylene regulates root growth through effects on auxin biosynthesis and transport dependent auxin distribution,” Plant Cell, vol. 19, no. 7. American Society of Plant Biologists, pp. 2197–2212, 2007.
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2007 | Journal Article | IST-REx-ID: 3027
N. Malenica et al., “MODULATOR of PIN genes control steady state levels of Arabidopsis PIN proteins,” Plant Journal, vol. 51, no. 4. Wiley-Blackwell, pp. 537–550, 2007.
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2007 | Journal Article | IST-REx-ID: 3028
M. Michniewicz et al., “Antagonistic regulation of PIN phosphorylation by PP2A and PINOID directs auxin flux,” Cell, vol. 130, no. 6. Cell Press, pp. 1044–1056, 2007.
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