Please note that IST Research Explorer no longer supports Internet Explorer versions 8 or 9 (or earlier).
We recommend upgrading to the latest Internet Explorer, Google Chrome, or Firefox.
6502 Publications
2007 | Conference Paper | IST-REx-ID: 3981
Alpha-beta witness complexes
D. Attali, H. Edelsbrunner, J. Harer, Y. Mileyko, in:, Springer, 2007, pp. 386–397.
View
| DOI
D. Attali, H. Edelsbrunner, J. Harer, Y. Mileyko, in:, Springer, 2007, pp. 386–397.
2007 | Journal Article | IST-REx-ID: 4152
Zebrafish gastrulation: Cell movements, signals, and mechanisms
L. Rohde, C.-P.J. Heisenberg, International Review of Cytology - A Survey of Cell Biology 261 (2007) 159–192.
View
| DOI
L. Rohde, C.-P.J. Heisenberg, International Review of Cytology - A Survey of Cell Biology 261 (2007) 159–192.
2007 | Journal Article | IST-REx-ID: 4182
The role of cell adhesion and contractility for germ layer morphogenesis during zebrafish gastrulation
M. Krieg, Y. Arboleda, D. Müller, C.-P.J. Heisenberg, European Journal of Cell Biology 86 (2007) 39–39.
View
| DOI
M. Krieg, Y. Arboleda, D. Müller, C.-P.J. Heisenberg, European Journal of Cell Biology 86 (2007) 39–39.
2007 | Journal Article | IST-REx-ID: 4205
The Bmp gradient of the zebrafish gastrula guides migrating lateral cells by regulating cell-cell adhesion
S. Von Der Hardt, J. Bakkers, A. Inbal, L. Carvalho, L. Solnica Krezel, C.-P.J. Heisenberg, M. Hammerschmidt, Current Biology 17 (2007) 475–487.
View
| DOI
S. Von Der Hardt, J. Bakkers, A. Inbal, L. Carvalho, L. Solnica Krezel, C.-P.J. Heisenberg, M. Hammerschmidt, Current Biology 17 (2007) 475–487.
2007 | Journal Article | IST-REx-ID: 4225
Evolution and multilevel optimization of the genetic code
M.T. Bollenbach, K. Vetsigian, R. Kishony, Genome Research 17 (2007) 401–404.
View
| DOI
M.T. Bollenbach, K. Vetsigian, R. Kishony, Genome Research 17 (2007) 401–404.
2007 | Journal Article | IST-REx-ID: 4226
Kinetics of morphogen gradient formation
A. Kicheva, P. Pantazis, T. Bollenbach, Y. Kalaidzidis, T. Bittig, F. Julicher, M. Gonzalez Gaitan, Science 315 (2007) 521–525.
View
| DOI
A. Kicheva, P. Pantazis, T. Bollenbach, Y. Kalaidzidis, T. Bittig, F. Julicher, M. Gonzalez Gaitan, Science 315 (2007) 521–525.
2007 | Conference Paper | IST-REx-ID: 4233
Alternativas prebióticas para la síntesis de amino- ácidos y otras moléculas relacionadas
H. de Vladar, in:, N. Falcón, Y. Loyo De Sardi (Eds.), Consejo de Desarrollo Cientifico y Tecnologico, 2007, pp. 91–109.
View
| DOI
H. de Vladar, in:, N. Falcón, Y. Loyo De Sardi (Eds.), Consejo de Desarrollo Cientifico y Tecnologico, 2007, pp. 91–109.
2007 | Journal Article | IST-REx-ID: 4234 | 
Determinism, noise, and spurious estimations in a generalised model of population growth
H. de Vladar, I. Pen, Physica A 373 (2007) 477–485.
View
| DOI
| Download Preprint (ext.)
| arXiv
H. de Vladar, I. Pen, Physica A 373 (2007) 477–485.
2007 | Journal Article | IST-REx-ID: 4246
Do evolution and ecology need the Gaia hypothesis?
A. Free, N.H. Barton, Trends in Ecology and Evolution 22 (2007) 611–619.
View
| DOI
A. Free, N.H. Barton, Trends in Ecology and Evolution 22 (2007) 611–619.
2007 | Journal Article | IST-REx-ID: 4247
The relation between multilocus population genetics and social evolution theory
A. Gardner, S. West, N.H. Barton, American Naturalist 169 (2007) 207–226.
View
| DOI
A. Gardner, S. West, N.H. Barton, American Naturalist 169 (2007) 207–226.
2007 | Conference Paper | IST-REx-ID: 4342
Library 2.0 and User-Generated Content - What can the users do for us?
P. Danowski, in:, IFLA, 2007.
View
| DOI
| Download None (ext.)
P. Danowski, in:, IFLA, 2007.
2007 | Journal Article | IST-REx-ID: 4343
Wikipedia und Normdateien: Wege der Vernetzung am Beispiel der Kooperation mit der Personennamendatei
P. Danowski, B. Pfeifer, Bibliothek - Forschung Und Praxis 31 (2007) 149–155.
View
| DOI
P. Danowski, B. Pfeifer, Bibliothek - Forschung Und Praxis 31 (2007) 149–155.
2007 | Journal Article | IST-REx-ID: 4344
Bibliothek 2.0 ? Wird alles anders?
P. Danowski, L. Heller, Bibliothek - Forschung Und Praxis 31 (2007) 130–136.
View
| DOI
| Download (ext.)
P. Danowski, L. Heller, Bibliothek - Forschung Und Praxis 31 (2007) 130–136.
2007 | Journal Article | IST-REx-ID: 4353
The use of coded PCR primers enables high-throughput sequencing of multiple homolog amplification products by 454 parallel sequencing
J. Binladen, M.T. Gilbert, J.P. Bollback, F. Panitz, C. Bendixen, R. Nielsen, E. Willerslev, PLoS One 2 (2007).
View
| DOI
J. Binladen, M.T. Gilbert, J.P. Bollback, F. Panitz, C. Bendixen, R. Nielsen, E. Willerslev, PLoS One 2 (2007).
2007 | Journal Article | IST-REx-ID: 4354
Exploring genomic dark matter: a critical assessment of the performance of homology search methods on noncoding RNA
E. Freyhult, J.P. Bollback, P. Gardner, Genome Research 17 (2007) 117–25.
View
| DOI
| Download (ext.)
E. Freyhult, J.P. Bollback, P. Gardner, Genome Research 17 (2007) 117–25.
2007 | Journal Article | IST-REx-ID: 4355
Clonal interference is alleviated by high mutation rates in large populations
J.P. Bollback, J. Huelsenbeck, Molecular Biology and Evolution 24 (2007) 1397–1406.
View
| DOI
J.P. Bollback, J. Huelsenbeck, Molecular Biology and Evolution 24 (2007) 1397–1406.
2007 | Journal Article | IST-REx-ID: 4356
Genes under positive selection in Escherichia coli
L. Petersen, J.P. Bollback, M. Dimmic, M. Hubisz, R. Nielsen, Genome Research 17 (2007) 1336–1343.
View
| DOI
L. Petersen, J.P. Bollback, M. Dimmic, M. Hubisz, R. Nielsen, Genome Research 17 (2007) 1336–1343.
2007 | Conference Paper | IST-REx-ID: 4368
AMT: a property-based monitoring tool for analog systems
D. Nickovic, O. Maler, in:, Springer, 2007, pp. 304–319.
View
| DOI
D. Nickovic, O. Maler, in:, Springer, 2007, pp. 304–319.
2007 | Conference Paper | IST-REx-ID: 4370
On synthesizing controllers from bounded-response properties
O. Maler, D. Nickovic, A. Pnueli, in:, Springer, 2007, pp. 95–107.
View
| DOI
O. Maler, D. Nickovic, A. Pnueli, in:, Springer, 2007, pp. 95–107.
2007 | Conference Paper | IST-REx-ID: 4394
Using First-Order Theorem Provers in the Jahob Data Structure Verification System
C. Bouillaguet, V. Kuncak, T. Wies, K. Zee, M. Rinard, in:, Springer, 2007, pp. 74–88.
View
| DOI
C. Bouillaguet, V. Kuncak, T. Wies, K. Zee, M. Rinard, in:, Springer, 2007, pp. 74–88.
2007 | Conference Paper | IST-REx-ID: 4398
Shape Analysis for Composite Data Structures
J. Berdine, C. Calcagno, B. Cook, D. Distefano, P. O’Hearn, T. Wies, H. Yang, in:, Springer, 2007, pp. 178–192.
View
| DOI
J. Berdine, C. Calcagno, B. Cook, D. Distefano, P. O’Hearn, T. Wies, H. Yang, in:, Springer, 2007, pp. 178–192.
2007 | Conference Paper | IST-REx-ID: 4399
Algorithms for interface synthesis
D. Beyer, T.A. Henzinger, V. Singh, in:, Springer, 2007, pp. 4–19.
View
| DOI
D. Beyer, T.A. Henzinger, V. Singh, in:, Springer, 2007, pp. 4–19.
2007 | Conference Paper | IST-REx-ID: 4402
Model Checking on Trees with Path Equivalences
R. Alur, P. Cerny, S. Chaudhuri, in:, Springer, 2007, pp. 664–678.
View
| DOI
R. Alur, P. Cerny, S. Chaudhuri, in:, Springer, 2007, pp. 664–678.
2007 | Journal Article | IST-REx-ID: 4405
Qualitative networks: A symbolic approach to analyze biological signaling networks
M. Schaub, T.A. Henzinger, J. Fisher, BMC Systems Biology 1 (2007).
View
| DOI
| Download (ext.)
M. Schaub, T.A. Henzinger, J. Fisher, BMC Systems Biology 1 (2007).
2007 | Book Chapter | IST-REx-ID: 4417
Abstract counterexample-based refinement for powerset domains
R. Manevich, J. Field, T.A. Henzinger, G. Ramalingam, M. Sagiv, in:, Program Analysis and Compilation, Theory and Practice: Essays Dedicated to Reinhard Wilhelm on the Occasion of His 60th Birthday, Springer, 2007, pp. 273–292.
View
| DOI
R. Manevich, J. Field, T.A. Henzinger, G. Ramalingam, M. Sagiv, in:, Program Analysis and Compilation, Theory and Practice: Essays Dedicated to Reinhard Wilhelm on the Occasion of His 60th Birthday, Springer, 2007, pp. 273–292.
2007 | Journal Article | IST-REx-ID: 4446
The embedded machine: Predictable, portable real-time code
T.A. Henzinger, C. Kirsch, ACM Transactions on Programming Languages and Systems (TOPLAS) 29 (2007).
View
| DOI
T.A. Henzinger, C. Kirsch, ACM Transactions on Programming Languages and Systems (TOPLAS) 29 (2007).
2007 | Conference Paper | IST-REx-ID: 4511
Quantitative generalizations of languages
T.A. Henzinger, in:, Springer, 2007, pp. 20–22.
View
| DOI
T.A. Henzinger, in:, Springer, 2007, pp. 20–22.
2007 | Conference Paper | IST-REx-ID: 4514
Games, time, and probability: Graph models for system design and analysis
T.A. Henzinger, in:, Springer, 2007, pp. 103–110.
View
| DOI
T.A. Henzinger, in:, Springer, 2007, pp. 103–110.
2007 | Journal Article | IST-REx-ID: 4529
Executable cell biology
J. Fisher, T.A. Henzinger, Nature Biotechnology 25 (2007) 1239–1249.
View
| DOI
J. Fisher, T.A. Henzinger, Nature Biotechnology 25 (2007) 1239–1249.
2007 | Conference (Editor) | IST-REx-ID: 4530
CSL: Computer Science Logic
J. Duparc, T.A. Henzinger, CSL: Computer Science Logic , Springer, 2007.
View
| DOI
J. Duparc, T.A. Henzinger, CSL: Computer Science Logic , Springer, 2007.
2007 | Journal Article | IST-REx-ID: 4531
Predictive modeling of signaling crosstalk during C. elegans vulval development
J. Fisher, N. Piterman, A. Hajnal, T.A. Henzinger, PLoS Computational Biology 3(5):e92 (2007).
View
| DOI
J. Fisher, N. Piterman, A. Hajnal, T.A. Henzinger, PLoS Computational Biology 3(5):e92 (2007).
2007 | Conference Paper | IST-REx-ID: 4537
Assume-guarantee synthesis
K. Chatterjee, T.A. Henzinger, in:, Springer, 2007, pp. 261–275.
View
| DOI
K. Chatterjee, T.A. Henzinger, in:, Springer, 2007, pp. 261–275.
2007 | Journal Article | IST-REx-ID: 4547
Algorithms for omega-regular games with imperfect information
K. Chatterjee, L. Doyen, T.A. Henzinger, J. Raskin, Logical Methods in Computer Science 3 (2007) 1–23.
View
| DOI
K. Chatterjee, L. Doyen, T.A. Henzinger, J. Raskin, Logical Methods in Computer Science 3 (2007) 1–23.
2007 | Thesis | IST-REx-ID: 4559
Stochastic ω-Regular Games
K. Chatterjee, Stochastic ω-Regular Games, University of California, Berkeley, 2007.
View
| Download (ext.)
K. Chatterjee, Stochastic ω-Regular Games, University of California, Berkeley, 2007.
2007 | Thesis | IST-REx-ID: 4566
A framework for compositional design and analysis of systems
A. Chakrabarti, A Framework for Compositional Design and Analysis of Systems, University of California, Berkeley, 2007.
View
A. Chakrabarti, A Framework for Compositional Design and Analysis of Systems, University of California, Berkeley, 2007.
2007 | Journal Article | IST-REx-ID: 4567
The software model checker BLAST: Applications to software engineering
D. Beyer, T.A. Henzinger, R. Jhala, R. Majumdar, International Journal on Software Tools for Technology Transfer 9 (2007) 505–525.
View
| DOI
D. Beyer, T.A. Henzinger, R. Jhala, R. Majumdar, International Journal on Software Tools for Technology Transfer 9 (2007) 505–525.
2007 | Conference Paper | IST-REx-ID: 4570
Minimum-time reachability in timed games
T. Brihaye, T.A. Henzinger, V. Prabhu, J. Raskin, in:, Springer, 2007, pp. 825–837.
View
| DOI
T. Brihaye, T.A. Henzinger, V. Prabhu, J. Raskin, in:, Springer, 2007, pp. 825–837.
2007 | Conference Paper | IST-REx-ID: 4571
Path invariants
D. Beyer, T.A. Henzinger, R. Majumdar, A. Rybalchenko, in:, ACM, 2007, pp. 300–309.
View
| DOI
D. Beyer, T.A. Henzinger, R. Majumdar, A. Rybalchenko, in:, ACM, 2007, pp. 300–309.
2007 | Conference Paper | IST-REx-ID: 4572
Invariant synthesis for combined theories
D. Beyer, T.A. Henzinger, R. Majumdar, A. Rybalchenko, in:, Springer, 2007, pp. 378–394.
View
| DOI
D. Beyer, T.A. Henzinger, R. Majumdar, A. Rybalchenko, in:, Springer, 2007, pp. 378–394.
2007 | Conference Paper | IST-REx-ID: 4573
Configurable software verification: Concretizing the convergence of model checking and program analysis
D. Beyer, T.A. Henzinger, G. Théoduloz, in:, Springer, 2007, pp. 504–518.
View
| DOI
D. Beyer, T.A. Henzinger, G. Théoduloz, in:, Springer, 2007, pp. 504–518.
2007 | Conference Paper | IST-REx-ID: 4575
An application of web-service interfaces
D. Beyer, A. Chakrabarti, T.A. Henzinger, S. Seshia, in:, IEEE, 2007, pp. 831–838.
View
| DOI
D. Beyer, A. Chakrabarti, T.A. Henzinger, S. Seshia, in:, IEEE, 2007, pp. 831–838.
2007 | Journal Article | IST-REx-ID: 3019
Interactions among PIN FORMED and P glycoprotein auxin transporters in Arabidopsis
J. Blakeslee, A. Bandyopadhyay, R. Ok, J. Mravec, B. Titapiwatanakun, M. Sauer, S. Makam, Y. Cheng, R. Bouchard, J. Adamec, M. Geisler, A. Nagashima, T. Sakai, E. Martinoia, J. Friml, W. Peer, A. Murphy, Plant Cell 19 (2007) 131–147.
View
| DOI
J. Blakeslee, A. Bandyopadhyay, R. Ok, J. Mravec, B. Titapiwatanakun, M. Sauer, S. Makam, Y. Cheng, R. Bouchard, J. Adamec, M. Geisler, A. Nagashima, T. Sakai, E. Martinoia, J. Friml, W. Peer, A. Murphy, Plant Cell 19 (2007) 131–147.
2007 | Conference Paper | IST-REx-ID: 3021
Interactions of PIN and PGP auxin transport mechanisms
A. Bandyopadhyay, J. Blakeslee, O. Lee, J. Mravec, M. Sauer, B. Titapiwatanakun, S. Makam, R. Bouchard, M. Geisler, E. Martinoia, J. Friml, W. Peer, A. Murphy, in:, Portland Press, 2007, pp. 137–141.
View
| DOI
A. Bandyopadhyay, J. Blakeslee, O. Lee, J. Mravec, M. Sauer, B. Titapiwatanakun, S. Makam, R. Bouchard, M. Geisler, E. Martinoia, J. Friml, W. Peer, A. Murphy, in:, Portland Press, 2007, pp. 137–141.
2007 | Journal Article | IST-REx-ID: 3022
Clathrin-mediated constitutive endocytosis of PIN auxin efflux carriers in Arabidopsis
P. Dhonukshe, F. Aniento, I. Hwang, D. Robinson, J. Mravec, Y. Stierhof, J. Friml, Current Biology 17 (2007) 520–527.
View
| DOI
P. Dhonukshe, F. Aniento, I. Hwang, D. Robinson, J. Mravec, Y. Stierhof, J. Friml, Current Biology 17 (2007) 520–527.
2007 | Journal Article | IST-REx-ID: 3023
A unifying new model of cytokinesis for the dividing plant and animal cells
P. Dhonukshe, J. Šamaj, F. Baluška, J. Friml, Bioessays : News and Reviews in Molecular, Cellular and Developmental Biology 29 (2007) 371–381.
View
| DOI
| PubMed | Europe PMC
P. Dhonukshe, J. Šamaj, F. Baluška, J. Friml, Bioessays : News and Reviews in Molecular, Cellular and Developmental Biology 29 (2007) 371–381.
2007 | Journal Article | IST-REx-ID: 3024
Molecular and cellular aspects of auxin-transport-mediated development
A. Vieten, M. Sauer, P. Brewer, J. Friml, Trends in Plant Science 12 (2007) 160–168.
View
| DOI
| PubMed | Europe PMC
A. Vieten, M. Sauer, P. Brewer, J. Friml, Trends in Plant Science 12 (2007) 160–168.
2007 | Journal Article | IST-REx-ID: 3025
Erratum: Canalization of auxin flow by Aux/IAA-ARF-dependent feedback regulation of PIN polarity (Genes and Development (2006) 20 (2902-2911))
M. Sauer, J. Balla, C. Luschnig, J. Wiśniewska, V. Reinöhl, J. Friml, E. Benková, Genes and Development 21 (2007) 1431–1431.
View
M. Sauer, J. Balla, C. Luschnig, J. Wiśniewska, V. Reinöhl, J. Friml, E. Benková, Genes and Development 21 (2007) 1431–1431.
2007 | Journal Article | IST-REx-ID: 3026
Ethylene regulates root growth through effects on auxin biosynthesis and transport dependent auxin distribution
K. Růžička, K. Ljung, S. Vanneste, R. Podhorská, T. Beeckman, J. Friml, E. Benková, Plant Cell 19 (2007) 2197–2212.
View
| DOI
K. Růžička, K. Ljung, S. Vanneste, R. Podhorská, T. Beeckman, J. Friml, E. Benková, Plant Cell 19 (2007) 2197–2212.
2007 | Journal Article | IST-REx-ID: 3027
MODULATOR of PIN genes control steady state levels of Arabidopsis PIN proteins
N. Malenica, L. Abas, R. Benjamins, S. Kitakura, H. Sigmund, K. Jun, M. Hauser, J. Friml, C. Luschnig, Plant Journal 51 (2007) 537–550.
View
| DOI
N. Malenica, L. Abas, R. Benjamins, S. Kitakura, H. Sigmund, K. Jun, M. Hauser, J. Friml, C. Luschnig, Plant Journal 51 (2007) 537–550.
2007 | Journal Article | IST-REx-ID: 3028
Antagonistic regulation of PIN phosphorylation by PP2A and PINOID directs auxin flux
M. Michniewicz, M. Zago, L. Abas, D. Weijers, A. Schweighofer, I. Meskiene, M. Heisler, C. Ohno, J. Zhang, F. Huang, R. Schwab, D. Weigel, E. Meyerowitz, C. Luschnig, R. Offringa, J. Friml, Cell 130 (2007) 1044–1056.
View
| DOI
M. Michniewicz, M. Zago, L. Abas, D. Weijers, A. Schweighofer, I. Meskiene, M. Heisler, C. Ohno, J. Zhang, F. Huang, R. Schwab, D. Weigel, E. Meyerowitz, C. Luschnig, R. Offringa, J. Friml, Cell 130 (2007) 1044–1056.