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6696 Publications


2008 | Journal Article | IST-REx-ID: 3945
Tripp, C., Haid, B., Flacher, V., Sixt, M. K., Peter, H., Farkas, J., … Stoitzner, P. (2008). The lymph vessel network in mouse skin visualised with antibodies against the hyaluronan receptor LYVE-1. Immunobiology. Elsevier. https://doi.org/10.1016/j.imbio.2008.07.025
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2008 | Book Chapter | IST-REx-ID: 3969
Edelsbrunner, H., & Harer, J. (2008). Persistent homology - a survey. In Surveys on Discrete and Computational Geometry: Twenty Years Later (pp. 257–282). American Mathematical Society.
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2008 | Journal Article | IST-REx-ID: 3970
Dequéant, M., Ahnert, S., Edelsbrunner, H., Fink, T., Glynn, E., Hattem, G., … Pourquie, O. (2008). Comparison of pattern detection methods in microarray time series of the segmentation clock. PLoS One. Public Library of Science. https://doi.org/10.1371/journal.pone.0002856
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2008 | Journal Article | IST-REx-ID: 3971
Edelsbrunner, H., Harer, J., Mascarenhas, A., Pascucci, V., & Snoeyink, J. (2008). Time-varying Reeb graphs for continuous space-time data. Computational Geometry: Theory and Applications. Elsevier. https://doi.org/10.1016/j.comgeo.2007.11.001
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2008 | Conference Paper | IST-REx-ID: 3974
Edelsbrunner, H., Harer, J., & Patel, A. (2008). Reeb spaces of piecewise linear mappings (pp. 242–250). Presented at the SCG: Symposium on Computational Geometry, ACM. https://doi.org/10.1145/1377676.1377720
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2008 | Journal Article | IST-REx-ID: 4135
Storch, D., Šizling, A., Reif, J., Polechova, J., Šizlingová, E., & Gaston, K. (2008). The quest for a null model for macroecological patterns: geometry of species distributions at multiple spatial scales. Ecology Letters. Wiley-Blackwell. https://doi.org/3817
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2008 | Book Chapter | IST-REx-ID: 4137
Bridle, J., Polechova, J., & Vines, T. (2008). Patterns of biodiversity and limits to adaptation in time and space. In J. R. R. K. Butlin & D. Schluter (Eds.), Evolution and Speciation (pp. 77–101). Cambridge University Press. https://doi.org/3816
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2008 | Journal Article | IST-REx-ID: 4141
Vervenne, H., Crombez, K., Lambaerts, K., Carvalho, L., Köppen, M., Heisenberg, C.-P. J., … Petit, M. (2008). Lpp is involved in Wnt/PCP signaling and acts together with Scrib to mediate convergence and extension movements during zebrafish gastrulation. Developmental Biology. Elsevier. https://doi.org/10.1016/j.ydbio.2008.05.529
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2008 | Journal Article | IST-REx-ID: 4150
Schötz, E., Burdine, R., Julicher, F., Steinberg, M., Heisenberg, C.-P. J., & Foty, R. (2008). Quantitative differences in tissue surface tension influence zebrafish germ layer positioning. HFSP Journal. HFSP Publishing. https://doi.org/10.2976/1.2834817
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2008 | Journal Article | IST-REx-ID: 4161
Oteíza, P., Köppen, M., Concha, M., & Heisenberg, C.-P. J. (2008). Origin and shaping of the laterality organ in zebrafish. Development. Company of Biologists. https://doi.org/10.1242/dev.022228
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2008 | Journal Article | IST-REx-ID: 4180
Krieg, M., Helenius, J., Heisenberg, C.-P. J., & Mueller, D. (2008). A Bond for a Lifetime: Employing Membrane Nanotubes from Living Cells to Determine Receptor-Ligand Kinetics. Angewandte Chemie - International Edition. Wiley-Blackwell. https://doi.org/10.1002/anie.200803552
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2008 | Journal Article | IST-REx-ID: 4181
Krieg, M., Arboleda Estudillo, Y., Puech, P., Käfer, J., Graner, F., Mueller, D., & Heisenberg, C.-P. J. (2008). Tensile forces govern germ-layer organization in zebrafish. Nature Cell Biology. Nature Publishing Group. https://doi.org/10.1038/ncb1705
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2008 | Journal Article | IST-REx-ID: 4190
Kai, M., Heisenberg, C.-P. J., & Tada, M. (2008). Sphingosine-1-phosphate receptors regulate individual cell behaviours underlying the directed migration of prechordal plate progenitor cells during zebrafish gastrulation. Development. Company of Biologists. https://doi.org/10.1242/dev.020396
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2008 | Journal Article | IST-REx-ID: 4193
Helenius, J., Heisenberg, C.-P. J., Gaub, H., & Mueller, D. (2008). Single-cell force spectroscopy. Journal of Cell Science. Company of Biologists. https://doi.org/10.1242/​jcs.030999
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2008 | Journal Article | IST-REx-ID: 4198
Heisenberg, C.-P. J., & Solnica Krezel, L. (2008). Back and forth between cell fate specification and movement during vertebrate gastrulation. Current Opinion in Genetics & Development. Elsevier. https://doi.org/10.1016/j.gde.2008.07.011
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2008 | Journal Article | IST-REx-ID: 4227
Bollenbach, T., Pantazis, P., Kicheva, A., Bokel, C., González Gaitán, M., & Julicher, F. (2008). Precision of the Dpp gradient. Development. Company of Biologists. https://doi.org/10.1242/dev.012062
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2008 | Conference Paper | IST-REx-ID: 4244
Yang, E., Barton, N. H., Arslan, T., & Erdogan, A. (2008). A novel shifting balance theory-based approach to optimization of an energy-constrained modulation scheme for wireless sensor networks (pp. 2749–2756). Presented at the WCCI: IEEE World Congress on Computational Intelligence, IEEE. https://doi.org/10.1109/CEC.2008.4631167
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2008 | Journal Article | IST-REx-ID: 4245
Pannebakker, B., Halligan, D., Reynolds, K. T., Ballantyne, G., Shuker, D., Barton, N. H., & West, S. (2008). Effects of spontaneous mutation accumulation on sex ratio traits. Evolution; International Journal of Organic Evolution. Wiley-Blackwell. https://doi.org/10.1111/j.1558-5646.2008.00434.x
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2008 | Conference Paper | IST-REx-ID: 4366
Podelski, A., Rybalchenko, A., & Wies, T. (2008). Heap Assumptions on Demand (Vol. 5123, pp. 314–327). Presented at the CAV: Computer Aided Verification, Springer. https://doi.org/10.1007/978-3-540-70545-1_31
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2008 | Book Chapter | IST-REx-ID: 4371
Maler, O., Nickovic, D., & Pnueli, A. (2008). Checking temporal properties of discrete, timed and continuous behaviors. In Pillars of Computer science: Essays Dedicated To Boris (Boaz) Trakhtenbrot on the Occasion of His 85th Birthday (pp. 475–505). Springer. https://doi.org/1566
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2008 | Conference Paper | IST-REx-ID: 4384 | OA
Guerraoui, R., Henzinger, T. A., Jobstmann, B., & Singh, V. (2008). Model checking transactional memories (pp. 372–382). Presented at the PLDI: Programming Languages Design and Implementation, ACM. https://doi.org/10.1145/1375581.1375626
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2008 | Conference Paper | IST-REx-ID: 4386
Guerraoui, R., Henzinger, T. A., & Singh, V. (2008). Permissiveness in transactional memories (Vol. 5218, pp. 305–319). Presented at the DISC: Distributed Computing, Springer. https://doi.org/10.1007/978-3-540-87779-0_21
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2008 | Conference Paper | IST-REx-ID: 4387
Guerraoui, R., Henzinger, T. A., & Singh, V. (2008). Completeness and nondeterminism in model checking transactional memories (Vol. 5201, pp. 21–35). Presented at the CONCUR: Concurrency Theory, Schloss Dagstuhl - Leibniz-Zentrum für Informatik. https://doi.org/10.1007/978-3-540-85361-9_6
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2008 | Conference Paper | IST-REx-ID: 4397
Beyer, D., Zufferey, D., & Majumdar, R. (2008). CSIsat: Interpolation for LA+EUF (pp. 304–308). Presented at the CAV: Computer Aided Verification, Springer.
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2008 | Conference Paper | IST-REx-ID: 4400
Aviv, A., Cerny, P., Clark, S., Cronin, E., Shah, G., Sherr, M., & Blaze, M. (2008). Security Evaluation of ES&S Voting Machines and Election Management System. Presented at the Usenix/ Accurate Electronic Voting Technology Workshop (EVT) 08, USENIX. https://doi.org/1545
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2008 | Thesis | IST-REx-ID: 4409
Prabhu, V. (2008). Games for the verification of timed systems. University of California, Berkeley.
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2008 | Thesis | IST-REx-ID: 4415
Matic, S. (2008). Compositionality in deterministic real-time embedded systems. University of California, Berkeley.
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2008 | Conference Paper | IST-REx-ID: 4452
Henzinger, T. A., Hottelier, T., & Kovács, L. (2008). Valigator: A verification tool with bound and invariant generation (Vol. 5330, pp. 333–342). Presented at the LPAR: Logic for Programming, Artificial Intelligence, and Reasoning, Springer. https://doi.org/10.1007/978-3-540-89439-1_24
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2008 | Journal Article | IST-REx-ID: 4509
Henzinger, T. A. (2008). Two challenges in embedded systems design: Predictability and robustness. Philosophical Transactions of the Royal Society A Mathematical Physical and Engineering Sciences. Royal Society of London. https://doi.org/10.1098/rsta.2008.0141
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2008 | Conference Paper | IST-REx-ID: 4521
Gupta, A., Henzinger, T. A., Majumdar, R., Rybalchenko, A., & Xu, R. (2008). Proving non-termination (pp. 147–158). Presented at the POPL: Principles of Programming Languages, ACM. https://doi.org/10.1145/1328438.1328459
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2008 | Thesis | IST-REx-ID: 4524
Ghosal, A. (2008). A hierarchical coordination language for reliable real-time tasks. University of California, Berkeley.
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2008 | Conference Paper | IST-REx-ID: 4527
Fisher, J., Henzinger, T. A., Mateescu, M., & Piterman, N. (2008). Bounded asynchrony: Concurrency for modeling cell-cell interactions (Vol. 5054, pp. 17–32). Presented at the FMSB: Formal Methods in Systems Biology, Springer. https://doi.org/10.1007/978-3-540-68413-8_2
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2008 | Journal Article | IST-REx-ID: 4532
Doyen, L., Henzinger, T. A., & Raskin, J. (2008). Equivalence of labeled Markov chains. International Journal of Foundations of Computer Science. World Scientific Publishing. https://doi.org/10.1142/S0129054108005814
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2008 | Conference Paper | IST-REx-ID: 4533
Doyen, L., Henzinger, T. A., Jobstmann, B., & Petrov, T. (2008). Interface theories with component reuse (pp. 79–88). Presented at the EMSOFT: Embedded Software , ACM. https://doi.org/10.1145/1450058.1450070
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2008 | Journal Article | IST-REx-ID: 4534
Chatterjee, K., & Henzinger, T. A. (2008). Reduction of stochastic parity to stochastic mean-payoff games. Information Processing Letters. Elsevier. https://doi.org/10.1016/j.ipl.2007.08.035
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2008 | Conference Paper | IST-REx-ID: 4546
Chatterjee, K., Ghosal, A., Henzinger, T. A., Iercan, D., Kirsch, C., Pinello, C., & Sangiovanni Vincentelli, A. (2008). Logical reliability of interacting real-time tasks (pp. 909–914). Presented at the DATE: Design, Automation and Test in Europe, IEEE. https://doi.org/10.1145/1403375.1403595
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2008 | Journal Article | IST-REx-ID: 4548
Chatterjee, K., Majumdar, R., & Henzinger, T. A. (2008). Stochastic limit-average games are in EXPTIME. International Journal of Game Theory. Springer. https://doi.org/10.1007/s00182-007-0110-5
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2008 | Conference Paper | IST-REx-ID: 4568
Beyer, D., Henzinger, T. A., & Théoduloz, G. (2008). Program analysis with dynamic change of precision (pp. 29–38). Presented at the ASE: Automated Software Engineering, ACM. https://doi.org/10.1109/ASE.2008.13
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2008 | Journal Article | IST-REx-ID: 3030
Růčková, E., Friml, J., Procházková Schrumpfová, P., & Fajkus, J. (2008). Role of alternative telomere lengthening unmasked in telomerase knock-out mutant plants. Plant Molecular Biology. Springer. https://doi.org/10.1007/s11103-008-9295-7
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2008 | Journal Article | IST-REx-ID: 3031
Dhonukshe, P., Grigoriev, I., Fischer, R., Tominaga, M., Robinson, D., Hašek, J., … Friml, J. (2008). Auxin transport inhibitors impair vesicle motility and actin cytoskeleton dynamics in diverse eukaryotes. PNAS. National Academy of Sciences. https://doi.org/10.1073/pnas.0711414105
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2008 | Journal Article | IST-REx-ID: 3032
Kleine Vehn, J., Dhonukshe, P., Sauer, M., Brewer, P., Wiśniewska, J., Paciorek, T., … Friml, J. (2008). ARF GEF dependent transcytosis and polar delivery of PIN auxin carriers in Arabidopsis. Current Biology. Cell Press. https://doi.org/10.1016/j.cub.2008.03.021
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2008 | Book Chapter | IST-REx-ID: 3033
Sauer, M., & Friml, J. (2008). Visualization of auxin gradients in embryogenesis . In M. Suárez & P. Bozhkov (Eds.), Plant Embryogenesis (Vol. 427, pp. 137–144). Humana Press. https://doi.org/10.1007/978-1-59745-273-1_11
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2008 | Journal Article | IST-REx-ID: 3034
Friml, J., & Sauer, M. (2008). Plant biology: In their neighbour’s shadow. Nature. Nature Publishing Group. https://doi.org/10.1038/453298a
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2008 | Book Chapter | IST-REx-ID: 3035
Sauer, M., & Friml, J. (2008). In vitro culture of Arabidopsis embryos . In M. Suárez & P. Bozhkov (Eds.), Plant Embryogenesis (Vol. 427, pp. 71–76). Humana Press. https://doi.org/10.1007/978-1-59745-273-1_5
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2008 | Journal Article | IST-REx-ID: 3036
Dubrovsky, J., Sauer, M., Napsucialy Mendivil, S., Ivanchenko, M., Friml, J., Shishkova, S., … Benková, E. (2008). Auxin acts as a local morphogenetic trigger to specify lateral root founder cells. PNAS. National Academy of Sciences. https://doi.org/10.1073/pnas.0712307105
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2008 | Journal Article | IST-REx-ID: 3037 | OA
Feraru, E., & Friml, J. (2008). PIN polar targeting. Plant Physiology. American Society of Plant Biologists. https://doi.org/10.1104/pp.108.121756
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2008 | Journal Article | IST-REx-ID: 3038
Swarup K, Benková E, Swarup R, Casimiro I, Péret B, Yang Y, Parry G, Nielsen E, De Smet I, Vanneste S, Levesque M, Carrier D, James N, Calvo V, Ljung K, Kramer E, Roberts R, Graham N, Marillonnet S, Patel K, Jones J, Taylor C, Schachtman D, May S, Sandberg G, Benfey P, Friml J, Kerr I, Beeckman T, Laplaze L, Bennett M. 2008. The auxin influx carrier LAX3 promotes lateral root emergence. Nature Cell Biology. 10(8), 946–954.
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2008 | Journal Article | IST-REx-ID: 3039
De Smet, I., Vassileva, V., De Rybel, B., Levesque, M., Grunewald, W., Van Damme, D., … Beeckman, T. (2008). Receptor-like kinase ACR4 restricts formative cell divisions in the Arabidopsis root. Science. American Association for the Advancement of Science. https://doi.org/10.1126/science.1160158
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2008 | Journal Article | IST-REx-ID: 3040
Kleine Vehn, J., Łangowski, Ł., Wiśniewska, J., Dhonukshe, P., Brewer, P., & Friml, J. (2008). Cellular and molecular requirements for polar PIN targeting and transcytosis in plants. Molecular Plant. Oxford University Press. https://doi.org/10.1093/mp/ssn062
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2008 | Journal Article | IST-REx-ID: 3041
Santelia, D., Henrichs, S., Vincenzetti, V., Sauer, M., Bigler, L., Klein, M., … Martinoia, E. (2008). Flavonoids redirect PIN mediated polar auxin fluxes during root gravitropic responses. Journal of Biological Chemistry. American Society for Biochemistry and Molecular Biology. https://doi.org/ 10.1074/jbc.M710122200
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