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6122 Publications
2005 | Journal Article | IST-REx-ID: 3741 | 
Information-based clustering
N. Slonim, G. Atwal, G. Tkačik, W. Bialek, PNAS 102 (2005) 18297–18302.
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N. Slonim, G. Atwal, G. Tkačik, W. Bialek, PNAS 102 (2005) 18297–18302.
2005 | Preprint | IST-REx-ID: 3746 |
Estimating mutual information and multi-information in large networks
N. Slonim, G. Atwal, G. Tkačik, W. Bialek, ArXiv (2005) 1–11.
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N. Slonim, G. Atwal, G. Tkačik, W. Bialek, ArXiv (2005) 1–11.
2005 | Journal Article | IST-REx-ID: 3753
Real-time RNA profiling within a single bacterium
T. Le, S. Harlepp, C.C. Guet, K. Dittmar, T. Emonet, T. Pan, P. Cluzel, PNAS 102 (2005) 9160–9164.
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T. Le, S. Harlepp, C.C. Guet, K. Dittmar, T. Emonet, T. Pan, P. Cluzel, PNAS 102 (2005) 9160–9164.
2005 | Journal Article | IST-REx-ID: 3763
Controllable motion synthesis in a gaseous medium
L. Shi, Y. Yu, C.J. Wojtan, S. Chenney, The Visual Computer 21 (2005) 474–487.
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L. Shi, Y. Yu, C.J. Wojtan, S. Chenney, The Visual Computer 21 (2005) 474–487.
2005 | Journal Article | IST-REx-ID: 3808
Presynaptic action potential amplification by voltage-gated Na+ channels in hippocampal mossy fiber boutons
D. Engel, P.M. Jonas, Neuron 45 (2005) 405–17.
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D. Engel, P.M. Jonas, Neuron 45 (2005) 405–17.
2005 | Journal Article | IST-REx-ID: 3611
Mating patterns in a Bombina hybrid zone: Inferences from adult and full sib genotypes
B. Nürnberger, N.H. Barton, L. Kruuk, T. Vines, Heredity 94 (2005) 247–257.
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B. Nürnberger, N.H. Barton, L. Kruuk, T. Vines, Heredity 94 (2005) 247–257.
2005 | Journal Article | IST-REx-ID: 3612
Speciation and gene flow between snails of opposing chirality
A. Davison, S. Chiba, N.H. Barton, B. Clarke, PLoS Biology 3 (2005).
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A. Davison, S. Chiba, N.H. Barton, B. Clarke, PLoS Biology 3 (2005).
2005 | Journal Article | IST-REx-ID: 3613
Genetic variation for total fitness in Drosophila melanogaster: Complex yet replicable patterns
M. Gardner, K. Fowler, N.H. Barton, L. Patridge, Genetics 169 (2005) 1553–1571.
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M. Gardner, K. Fowler, N.H. Barton, L. Patridge, Genetics 169 (2005) 1553–1571.
2005 | Conference Paper | IST-REx-ID: 3684
Oblivious document capture and real-time retrieval
C. Lampert, T. Braun, A. Ulges, D. Keysers, T. Breuel, in:, CBDAR, 2005, pp. 79–86.
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C. Lampert, T. Braun, A. Ulges, D. Keysers, T. Breuel, in:, CBDAR, 2005, pp. 79–86.
2005 | Book Review | IST-REx-ID: 3812
Asynchronous GABA release generates long-lasting inhibition at a hippocampal interneuron-principal neuron synapse (Review)
S. Hefft, P.M. Jonas, Nature Neuroscience 8 (2005) 1319–28.
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S. Hefft, P.M. Jonas, Nature Neuroscience 8 (2005) 1319–28.
2005 | Conference Paper | IST-REx-ID: 3689
Document image dewarping using robust estimation of curled text lines
A. Ulges, C. Lampert, T. Breuel, in:, IEEE, 2005, pp. 1001–1005.
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A. Ulges, C. Lampert, T. Breuel, in:, IEEE, 2005, pp. 1001–1005.
2005 | Journal Article | IST-REx-ID: 3691
Boundary regularity of admissible operators
C. Lampert, Publicacions Matemàtiques 49 (2005) 179–195.
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C. Lampert, Publicacions Matemàtiques 49 (2005) 179–195.
2005 | Conference Paper | IST-REx-ID: 3892
Games with secure equilibria
K. Chatterjee, T.A. Henzinger, M. Jurdziński, in:, Springer, 2005, pp. 141–161.
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K. Chatterjee, T.A. Henzinger, M. Jurdziński, in:, Springer, 2005, pp. 141–161.
2005 | Conference Paper | IST-REx-ID: 3893
Two-player nonzero-sum ω-regular games
K. Chatterjee, in:, Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2005, pp. 413–427.
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K. Chatterjee, in:, Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2005, pp. 413–427.
2005 | Conference Paper | IST-REx-ID: 3896
Complexity of compositional model checking of computation tree logic on simple structures
K. Chatterjee, P. Dasgupta, P. Chakrabarti, in:, Springer, 2005, pp. 89–102.
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K. Chatterjee, P. Dasgupta, P. Chakrabarti, in:, Springer, 2005, pp. 89–102.
2005 | Conference Paper | IST-REx-ID: 3902
The drawback of mobility: invasive species in a globalised world
S. Cremer, J. Boomsma, in:, Elsevier, 2005.
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S. Cremer, J. Boomsma, in:, Elsevier, 2005.
2005 | Journal Article | IST-REx-ID: 3915
Primary sex ratio adjustment by ant queens in response to local mate competition
L. De Menten, S. Cremer, J. Heinze, S. Aron, Animal Behaviour 69 (2005) 1031–1035.
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L. De Menten, S. Cremer, J. Heinze, S. Aron, Animal Behaviour 69 (2005) 1031–1035.
2005 | Journal Article | IST-REx-ID: 3916
Sexual cooperation: mating increases longevity in ant queens
A. Schrempf, J. Heinze, S. Cremer, Current Biology 15 (2005) 267–270.
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A. Schrempf, J. Heinze, S. Cremer, Current Biology 15 (2005) 267–270.
2005 | Journal Article | IST-REx-ID: 3933
The conduit system transports soluble antigens from the afferent lymph to resident dendritic cells in the T cell area of the lymph node
M.K. Sixt, N. Kanazawa, M. Selg, T. Samson, G. Roos, D. Reinhardt, R. Pabst, M. Lutz, L. Sorokin, Immunity 22 (2005) 19–29.
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M.K. Sixt, N. Kanazawa, M. Selg, T. Samson, G. Roos, D. Reinhardt, R. Pabst, M. Lutz, L. Sorokin, Immunity 22 (2005) 19–29.
2005 | Conference Paper | IST-REx-ID: 3982
Coarse and reliable geometric alignment for protein docking
Y. Wang, P. Agarwal, P. Brown, H. Edelsbrunner, J. Rudolph, in:, World Scientific Publishing, 2005, pp. 64–75.
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Y. Wang, P. Agarwal, P. Brown, H. Edelsbrunner, J. Rudolph, in:, World Scientific Publishing, 2005, pp. 64–75.
2005 | Journal Article | IST-REx-ID: 3983
Experimental validation of the docking orientation of Cdc25 with its Cdk2-CycA protein substrate
J. Sohn, J. Parks, G. Buhrman, P. Brown, K. Kristjánsdóttir, A. Safi, H. Edelsbrunner, W. Yang, J. Rudolph, Biochemistry 44 (2005) 16563–16573.
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J. Sohn, J. Parks, G. Buhrman, P. Brown, K. Kristjánsdóttir, A. Safi, H. Edelsbrunner, W. Yang, J. Rudolph, Biochemistry 44 (2005) 16563–16573.
2005 | Journal Article | IST-REx-ID: 4138
The limitations of adaptive dynamics as a model of evolution
N.H. Barton, J. Polechova, Journal of Evolutionary Biology 18 (2005) 1186–1190.
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N.H. Barton, J. Polechova, Journal of Evolutionary Biology 18 (2005) 1186–1190.
2005 | Journal Article | IST-REx-ID: 4144
Wnt11 functions in gastrulation by controlling cell cohesion through Rab5c and E-cadherin
F. Ulrich, M. Krieg, E. Schötz, V. Link, I. Castanon, V. Schnabel, A. Taubenberger, D. Müller, P. Puech, C.-P.J. Heisenberg, Developmental Cell 9 (2005) 555–564.
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F. Ulrich, M. Krieg, E. Schötz, V. Link, I. Castanon, V. Schnabel, A. Taubenberger, D. Müller, P. Puech, C.-P.J. Heisenberg, Developmental Cell 9 (2005) 555–564.
2005 | Journal Article | IST-REx-ID: 4155
Measuring cell adhesion forces of primary gastrulating cells from zebrafish using atomic force microscopy
P. Puech, A. Taubenberger, F. Ulrich, M. Krieg, D. Mueller, C.-P.J. Heisenberg, Journal of Cell Science 118 (2005) 4199–4206.
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P. Puech, A. Taubenberger, F. Ulrich, M. Krieg, D. Mueller, C.-P.J. Heisenberg, Journal of Cell Science 118 (2005) 4199–4206.
2005 | Journal Article | IST-REx-ID: 4167
Monorail/Foxa2 regulates floorplate differentiation and specification of oligodendrocytes, serotonergic raphe neurones and cranial motoneurones
W. Norton, M. Mangoli, Z. Lele, H. Pogoda, B. Diamond, S. Mercurio, C. Russell, H. Teraoka, H. Stickney, G. Rauch, C.-P.J. Heisenberg, C. Houart, T. Schilling, H. Frohnhoefer, S. Rastegar, C. Neumann, R.M. Gardiner, U. Strähle, R. Geisler, M. Rees, W. Talbot, S. Wilson, Development 132 (2005) 645–658.
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W. Norton, M. Mangoli, Z. Lele, H. Pogoda, B. Diamond, S. Mercurio, C. Russell, H. Teraoka, H. Stickney, G. Rauch, C.-P.J. Heisenberg, C. Houart, T. Schilling, H. Frohnhoefer, S. Rastegar, C. Neumann, R.M. Gardiner, U. Strähle, R. Geisler, M. Rees, W. Talbot, S. Wilson, Development 132 (2005) 645–658.
2005 | Journal Article | IST-REx-ID: 4171
Shield formation at the onset of zebrafish gastrulation
J. Montero, L. Carvalho, M. Wilsch Bräuninger, B. Kilian, C. Mustafa, C.-P.J. Heisenberg, Development 132 (2005) 1187–1198.
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J. Montero, L. Carvalho, M. Wilsch Bräuninger, B. Kilian, C. Mustafa, C.-P.J. Heisenberg, Development 132 (2005) 1187–1198.
2005 | Journal Article | IST-REx-ID: 4183
Misshapen mediates actin-based cell contraction during zebrafish epiboly and Drosophila dorsal closure
M. Köppen, B. Fernández, L. Carvalho, A. Jacinto, C.-P.J. Heisenberg, Mechanisms of Development 122 (2005) S112–S113.
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M. Köppen, B. Fernández, L. Carvalho, A. Jacinto, C.-P.J. Heisenberg, Mechanisms of Development 122 (2005) S112–S113.
2005 | Journal Article | IST-REx-ID: 4251
Evolution of recombination due to random drift
N.H. Barton, S. Otto, Genetics 169 (2005) 2353–2370.
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N.H. Barton, S. Otto, Genetics 169 (2005) 2353–2370.
2005 | Journal Article | IST-REx-ID: 4252 |
Theoretical models of selection and mutationon quantitative traits
T. Johnson, N.H. Barton, Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences 360 (2005) 1411–1425.
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T. Johnson, N.H. Barton, Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences 360 (2005) 1411–1425.
2005 | Conference Paper | IST-REx-ID: 4367
Boolean Heaps
A. Podelski, T. Wies, in:, Springer, 2005, pp. 267–282.
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A. Podelski, T. Wies, in:, Springer, 2005, pp. 267–282.
2005 | Journal Article | IST-REx-ID: 4249
Speciation through competition: A critical review
J. Polechova, N.H. Barton, Evolution; International Journal of Organic Evolution 59 (2005) 1194–1210.
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J. Polechova, N.H. Barton, Evolution; International Journal of Organic Evolution 59 (2005) 1194–1210.
2005 | Conference Paper | IST-REx-ID: 4404
Synthesis of interface specifications for Java classes
R. Alur, P. Cerny, P. Madhusudan, W. Nam, in:, ACM, 2005, pp. 98–109.
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R. Alur, P. Cerny, P. Madhusudan, W. Nam, in:, ACM, 2005, pp. 98–109.
2005 | Conference Paper | IST-REx-ID: 4412
Trading end-to-end latency for composability
S. Matic, T.A. Henzinger, in:, IEEE, 2005, pp. 99–110.
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S. Matic, T.A. Henzinger, in:, IEEE, 2005, pp. 99–110.
2005 | Conference Paper | IST-REx-ID: 4418
A programmable microkernel for real-time systems
C. Kirsch, M. Sanvido, T.A. Henzinger, in:, ACM, 2005, pp. 35–45.
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C. Kirsch, M. Sanvido, T.A. Henzinger, in:, ACM, 2005, pp. 35–45.
2005 | Journal Article | IST-REx-ID: 4454
A classification of symbolic transition systems
T.A. Henzinger, R. Majumdar, J. Raskin, ACM Transactions on Computational Logic (TOCL) 6 (2005) 1–32.
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T.A. Henzinger, R. Majumdar, J. Raskin, ACM Transactions on Computational Logic (TOCL) 6 (2005) 1–32.
2005 | Conference Paper | IST-REx-ID: 4455
Quantifying similarities between timed systems
T.A. Henzinger, R. Majumdar, V. Prabhu, in:, Springer, 2005, pp. 226–241.
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T.A. Henzinger, R. Majumdar, V. Prabhu, in:, Springer, 2005, pp. 226–241.
2005 | Conference Paper | IST-REx-ID: 4456
Permissive interfaces
T.A. Henzinger, R. Jhala, R. Majumdar, in:, ACM, 2005, pp. 31–40.
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T.A. Henzinger, R. Jhala, R. Majumdar, in:, ACM, 2005, pp. 31–40.
2005 | Conference Paper | IST-REx-ID: 4457
Composable code generation for distributed Giotto
T.A. Henzinger, C. Kirsch, S. Matic, in:, ACM, 2005, pp. 21–30.
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T.A. Henzinger, C. Kirsch, S. Matic, in:, ACM, 2005, pp. 21–30.
2005 | Conference Paper | IST-REx-ID: 4536
Automatic rectangular refinement of affine hybrid systems
L. Doyen, T.A. Henzinger, J. Raskin, in:, Springer, 2005, pp. 144–161.
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L. Doyen, T.A. Henzinger, J. Raskin, in:, Springer, 2005, pp. 144–161.
2005 | Conference Paper | IST-REx-ID: 575
Counterfactual quantum computation
O. Hosten, M. Rakher, J. Barreiro, N. Peters, P. Kwiat, in:, IEEE, 2005, pp. 365–367.
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O. Hosten, M. Rakher, J. Barreiro, N. Peters, P. Kwiat, in:, IEEE, 2005, pp. 365–367.
2005 | Journal Article | IST-REx-ID: 6153
Neuronal substrates of complex behaviors in C. elegans
M. de Bono, A. Villu Maricq, Annual Review of Neuroscience 28 (2005) 451–501.
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| PubMed | Europe PMC
M. de Bono, A. Villu Maricq, Annual Review of Neuroscience 28 (2005) 451–501.
2005 | Journal Article | IST-REx-ID: 6154
Experience-dependent modulation of C. elegans behavior by ambient oxygen
B.H.H. Cheung, M. Cohen, C. Rogers, O. Albayram, M. de Bono, Current Biology 15 (2005) 905–917.
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B.H.H. Cheung, M. Cohen, C. Rogers, O. Albayram, M. de Bono, Current Biology 15 (2005) 905–917.
2005 | Journal Article | IST-REx-ID: 8491
SOFAST-HMQC experiments for recording two-dimensional deteronuclear correlation spectra of proteins within a few seconds
P. Schanda, Ē. Kupče, B. Brutscher, Journal of Biomolecular NMR 33 (2005) 199–211.
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P. Schanda, Ē. Kupče, B. Brutscher, Journal of Biomolecular NMR 33 (2005) 199–211.
2005 | Journal Article | IST-REx-ID: 8492
Very fast two-dimensional NMR spectroscopy for real-time investigation of dynamic events in proteins on the time scale of seconds
P. Schanda, B. Brutscher, Journal of the American Chemical Society 127 (2005) 8014–8015.
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P. Schanda, B. Brutscher, Journal of the American Chemical Society 127 (2005) 8014–8015.
2005 | Journal Article | IST-REx-ID: 8516
On diffusion in high-dimensional Hamiltonian systems
J. Bourgain, V. Kaloshin, Journal of Functional Analysis 229 (2005) 1–61.
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J. Bourgain, V. Kaloshin, Journal of Functional Analysis 229 (2005) 1–61.
2005 | Journal Article | IST-REx-ID: 877
The analysis of monomer sequences in protein and tRNA and the manifestation of the compensation of pathogenic deviations in their evolution
F. Kondrashov, Biofizika 50 (2005) 389–395.
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F. Kondrashov, Biofizika 50 (2005) 389–395.
2005 | Journal Article | IST-REx-ID: 878
In search of the limits of evolution
F. Kondrashov, Nature Genetics 37 (2005) 9–10.
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F. Kondrashov, Nature Genetics 37 (2005) 9–10.
2005 | Journal Article | IST-REx-ID: 882
Prediction of pathogenic mutations in mitochondrially encoded human tRNAs
F. Kondrashov, Human Molecular Genetics 14 (2005) 2415–2419.
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F. Kondrashov, Human Molecular Genetics 14 (2005) 2415–2419.
2005 | Journal Article | IST-REx-ID: 880
The convergent evolution of the secondary structure of mitochondrial cysteine tRNA in the nine-banded armadillo Dasypus novemcinctus
F. Kondrashov, Biofizika 50 (2005) 396–403.
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F. Kondrashov, Biofizika 50 (2005) 396–403.
2005 | Journal Article | IST-REx-ID: 8028 |
Signal propagation and logic gating in networks of integrate-and-fire neurons
T.P. Vogels, L.F. Abbott, Journal of Neuroscience 25 (2005) 10786–10795.
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T.P. Vogels, L.F. Abbott, Journal of Neuroscience 25 (2005) 10786–10795.