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6306 Publications


2007 | Conference Paper | IST-REx-ID: 4368
Nickovic D, Maler O. 2007. AMT: a property-based monitoring tool for analog systems. FORMATS: Formal Modeling and Analysis of Timed Systems, LNCS, , 304–319.
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2007 | Conference Paper | IST-REx-ID: 4370
Maler O, Nickovic D, Pnueli A. 2007. On synthesizing controllers from bounded-response properties. CAV: Computer Aided Verification, Lecture Notes in Computer Science, , 95–107.
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2007 | Conference Paper | IST-REx-ID: 4394
Bouillaguet C, Kuncak V, Wies T, Zee K, Rinard M. 2007. Using First-Order Theorem Provers in the Jahob Data Structure Verification System. VMCAI: Verification, Model Checking and Abstract Interpretation, LNCS 4349, , 74–88.
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2007 | Conference Paper | IST-REx-ID: 4398
Berdine J, Calcagno C, Cook B, Distefano D, O’Hearn P, Wies T, Yang H. 2007. Shape Analysis for Composite Data Structures. CAV: Computer Aided Verification, LNCS 4590, , 178–192.
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2007 | Conference Paper | IST-REx-ID: 4399
Beyer D, Henzinger TA, Singh V. 2007. Algorithms for interface synthesis. CAV: Computer Aided Verification, LNCS, vol. 4590, 4–19.
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2007 | Conference Paper | IST-REx-ID: 4402
Alur R, Cerny P, Chaudhuri S. 2007. Model Checking on Trees with Path Equivalences. TACAS: Tools and Algorithms for the Construction and Analysis of Systems, LNCS, , 664–678.
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2007 | Journal Article | IST-REx-ID: 4405
Schaub M, Henzinger TA, Fisher J. 2007. Qualitative networks: A symbolic approach to analyze biological signaling networks. BMC Systems Biology. 1(4).
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2007 | Book Chapter | IST-REx-ID: 4417
Manevich R, Field J, Henzinger TA, Ramalingam G, Sagiv M. 2007.Abstract counterexample-based refinement for powerset domains. In: Program Analysis and Compilation, Theory and Practice: Essays Dedicated to Reinhard Wilhelm on the Occasion of His 60th Birthday. LNCS, vol. 4444, 273–292.
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2007 | Journal Article | IST-REx-ID: 4446
Henzinger TA, Kirsch C. 2007. The embedded machine: Predictable, portable real-time code. ACM Transactions on Programming Languages and Systems (TOPLAS). 29(393).
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2007 | Conference Paper | IST-REx-ID: 4511
Henzinger TA. 2007. Quantitative generalizations of languages. DLT: Developments in Language Theory, LNCS, vol. 4588, 20–22.
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2007 | Conference Paper | IST-REx-ID: 4514
Henzinger TA. 2007. Games, time, and probability: Graph models for system design and analysis. SOFSEM: Current Trends in Theory and Practice of Computer Science, LNCS, vol. 4362, 103–110.
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2007 | Journal Article | IST-REx-ID: 4529
Fisher J, Henzinger TA. 2007. Executable cell biology. Nature Biotechnology. 25, 1239–1249.
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2007 | Conference (Editor) | IST-REx-ID: 4530
Duparc J, Henzinger TA. 2007. CSL: Computer Science Logic , Springer,p.
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2007 | Journal Article | IST-REx-ID: 4531
Fisher J, Piterman N, Hajnal A, Henzinger TA. 2007. Predictive modeling of signaling crosstalk during C. elegans vulval development. PLoS Computational Biology. 3(5):e92.
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2007 | Conference Paper | IST-REx-ID: 4537
Chatterjee K, Henzinger TA. 2007. Assume-guarantee synthesis. TACAS: Tools and Algorithms for the Construction and Analysis of Systems, LNCS, vol. 4424, 261–275.
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2007 | Journal Article | IST-REx-ID: 4547
Chatterjee K, Doyen L, Henzinger TA, Raskin J. 2007. Algorithms for omega-regular games with imperfect information. Logical Methods in Computer Science. 3(184), 1–23.
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2007 | Thesis | IST-REx-ID: 4559
Chatterjee K. 2007. Stochastic ω-Regular Games. University of California, Berkeley.
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2007 | Thesis | IST-REx-ID: 4566
Chakrabarti A. 2007. A framework for compositional design and analysis of systems. University of California, Berkeley.
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2007 | Journal Article | IST-REx-ID: 4567
Beyer D, Henzinger TA, Jhala R, Majumdar R. 2007. The software model checker BLAST: Applications to software engineering. International Journal on Software Tools for Technology Transfer. 9(5), 505–525.
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2007 | Conference Paper | IST-REx-ID: 4570
Brihaye T, Henzinger TA, Prabhu V, Raskin J. 2007. Minimum-time reachability in timed games. ICALP: Automata, Languages and Programming, LNCS, vol. 4596, 825–837.
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2007 | Conference Paper | IST-REx-ID: 4571
Beyer D, Henzinger TA, Majumdar R, Rybalchenko A. 2007. Path invariants. PLDI: Programming Languages Design and Implementation, 300–309.
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2007 | Conference Paper | IST-REx-ID: 4572
Beyer D, Henzinger TA, Majumdar R, Rybalchenko A. 2007. Invariant synthesis for combined theories. VMCAI: Verification, Model Checking and Abstract Interpretation, LNCS, vol. 4349, 378–394.
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2007 | Conference Paper | IST-REx-ID: 4573
Beyer D, Henzinger TA, Théoduloz G. 2007. Configurable software verification: Concretizing the convergence of model checking and program analysis. CAV: Computer Aided Verification, LNCS, vol. 4590, 504–518.
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2007 | Conference Paper | IST-REx-ID: 4575
Beyer D, Chakrabarti A, Henzinger TA, Seshia S. 2007. An application of web-service interfaces. ICWS: International Conference on Web Service, 831–838.
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2007 | Journal Article | IST-REx-ID: 3019
Blakeslee J, Bandyopadhyay A, Ok R, Mravec J, Titapiwatanakun B, Sauer M, Makam S, Cheng Y, Bouchard R, Adamec J, Geisler M, Nagashima A, Sakai T, Martinoia E, Friml J, Peer W, Murphy A. 2007. Interactions among PIN FORMED and P glycoprotein auxin transporters in Arabidopsis. Plant Cell. 19(1), 131–147.
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2007 | Conference Paper | IST-REx-ID: 3021
Bandyopadhyay A, Blakeslee J, Lee O, Mravec J, Sauer M, Titapiwatanakun B, Makam S, Bouchard R, Geisler M, Martinoia E, Friml J, Peer W, Murphy A. 2007. Interactions of PIN and PGP auxin transport mechanisms. Intercellular Signalling in Plants, Biochemical Society Transactions, vol. 35, 137–141.
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2007 | Journal Article | IST-REx-ID: 3022
Dhonukshe P, Aniento F, Hwang I, Robinson D, Mravec J, Stierhof Y, Friml J. 2007. Clathrin-mediated constitutive endocytosis of PIN auxin efflux carriers in Arabidopsis. Current Biology. 17(6), 520–527.
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2007 | Journal Article | IST-REx-ID: 3023
Dhonukshe P, Šamaj J, Baluška F, Friml J. 2007. A unifying new model of cytokinesis for the dividing plant and animal cells. Bioessays : News and Reviews in Molecular, Cellular and Developmental Biology. 29(4), 371–381.
View | DOI | PubMed | Europe PMC
 

2007 | Journal Article | IST-REx-ID: 3024
Vieten A, Sauer M, Brewer P, Friml J. 2007. Molecular and cellular aspects of auxin-transport-mediated development. Trends in Plant Science. 12(4), 160–168.
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2007 | Journal Article | IST-REx-ID: 3025
Sauer M, Balla J, Luschnig C, Wiśniewska J, Reinöhl V, Friml J, Benková E. 2007. Erratum: Canalization of auxin flow by Aux/IAA-ARF-dependent feedback regulation of PIN polarity (Genes and Development (2006) 20 (2902-2911)). Genes and Development. 21(11), 1431–1431.
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2007 | Journal Article | IST-REx-ID: 3026
Růžička K, Ljung K, Vanneste S, Podhorská R, Beeckman T, Friml J, Benková E. 2007. Ethylene regulates root growth through effects on auxin biosynthesis and transport dependent auxin distribution. Plant Cell. 19(7), 2197–2212.
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2007 | Journal Article | IST-REx-ID: 3027
Malenica N, Abas L, Benjamins R, Kitakura S, Sigmund H, Jun K, Hauser M, Friml J, Luschnig C. 2007. MODULATOR of PIN genes control steady state levels of Arabidopsis PIN proteins. Plant Journal. 51(4), 537–550.
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2007 | Journal Article | IST-REx-ID: 3028
Michniewicz M, Zago M, Abas L, Weijers D, Schweighofer A, Meskiene I, Heisler M, Ohno C, Zhang J, Huang F, Schwab R, Weigel D, Meyerowitz E, Luschnig C, Offringa R, Friml J. 2007. Antagonistic regulation of PIN phosphorylation by PP2A and PINOID directs auxin flux. Cell. 130(6), 1044–1056.
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2007 | Journal Article | IST-REx-ID: 3029
Laplaze L, Benková E, Casimiro I, Maes L, Vanneste S, Swarup R, Weijers D, Calvo V, Parizot B, Herrera Rodriguez M, Offringa R, Graham N, Doumas P, Friml J, Bogusz D, Beeckman T, Bennett M. 2007. Cytokinins act directly on lateral root founder cells to inhibit root initiation. Plant Cell. 19(12), 3889–3900.
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2007 | Journal Article | IST-REx-ID: 3144
Hippenmeyer S, Huber R, Ladle D, Murphy K, Arber S. 2007. ETS transcription factor Erm controls subsynaptic gene expression in skeletal muscles. Neuron. 55(5), 726–740.
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2007 | Journal Article | IST-REx-ID: 3187
Blake A, Criminisi A, Cross G, Kolmogorov V, Rother C. 2007. Fusion of stereo colour and contrast. Springer Tracts in Advanced Robotics. 28, 295–304.
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2007 | Conference Paper | IST-REx-ID: 3191
Kolmogorov V, Boykov Y, Rother C. 2007. Applications of parametric maxflow in computer vision. ICCV: International Conference on Computer Vision.
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2007 | Conference Paper | IST-REx-ID: 3192
Rother C, Kolmogorov V, Lempitsky V, Szummer M. 2007. Optimizing binary MRFs via extended roof duality. CVPR: Computer Vision and Pattern Recognition.
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2007 | Journal Article | IST-REx-ID: 3193
Kolmogorov V, Rother C. 2007. Minimizing nonsubmodular functions with graph cuts - A review. IEEE Transactions on Pattern Analysis and Machine Intelligence. 29(7), 1274–1279.
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2007 | Conference Paper | IST-REx-ID: 3218
Pietrzak KZ. 2007. Non-trivial black-box combiners for collision-resistant hash-functions don’t exist. EUROCRYPT: Theory and Applications of Cryptographic Techniques, LNCS, vol. 4515, 23–33.
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2007 | Conference Paper | IST-REx-ID: 3219
Maurer U, Pietrzak KZ, Renner R. 2007. Indistinguishability amplification. CRYPTO: International Cryptology Conference, LNCS, vol. 4622, 130–149.
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2007 | Conference Paper | IST-REx-ID: 3220
Dziembowski S, Pietrzak KZ. 2007. Intrusion resilient secret sharing. FOCS: Foundations of Computer Science, 227–237.
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2007 | Conference Paper | IST-REx-ID: 3221
Pietrzak KZ, Sjödin J. 2007. Range extension for weak PRFs the good the bad and the ugly. EUROCRYPT: Theory and Applications of Cryptographic Techniques, LNCS, vol. 4515, 517–533.
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2007 | Conference Paper | IST-REx-ID: 3222
Pietrzak KZ, Wikström D. 2007. Parallel repetition of computationally sound protocols revisited. TCC: Theory of Cryptography Conference, LNCS, vol. 4392, 86–102.
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2007 | Conference Paper | IST-REx-ID: 3223
Dodis Y, Pietrzak KZ. 2007. Improving the security of MACs via randomized message preprocessing. FSE: Fast Software Encryption, LNCS, vol. 4593, 414–433.
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2007 | Journal Article | IST-REx-ID: 3305
Desai M, Weissman D, Feldman M. 2007. Evolution can favor antagonistic epistasis. Genetics. 177(2), 1001–10.
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2007 | Journal Article | IST-REx-ID: 3411 | OA
Preiner J, Janovjak HL, Rankl C, Knaus H, Cisneros D, Kedrov A, Kienberger F, Mueller D, Hinterdorfer P. 2007. Free energy of membrane protein unfolding derived from single-molecule force measurements. Biophysical Journal. 93(3), 930–937.
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2007 | Book Review | IST-REx-ID: 3412
Kedrov A, Janovjak HL, Sapra T, Mueller D. 2007. Deciphering molecular interactions of native membrane proteins by single-molecule force spectroscopy. Annual Review of Biophysics. 36, 233–260.
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2007 | Journal Article | IST-REx-ID: 3427 | OA
Bollenbach MT, Kruse K, Pantazis P, Gonzalez Gaitan M, Julicher F. 2007. Morphogen transport in epithelia. Physical Review E Statistical Nonlinear and Soft Matter Physics. 75(1).
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2007 | Book Chapter | IST-REx-ID: 3432
Bollback JP, Gardner P, Nielsen R. 2007.Estimating the history of mutations on a phylogeny. In: Ancestral Sequence Reconstruction. , 69–79.
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