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7266 Publications
2021 | Conference Paper | IST-REx-ID: 10206 |

Into the unknown: active monitoring of neural networks
A. Lukina, C. Schilling, T.A. Henzinger, in:, 21st International Conference on Runtime Verification, Springer Nature, Cham, 2021, pp. 42–61.
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A. Lukina, C. Schilling, T.A. Henzinger, in:, 21st International Conference on Runtime Verification, Springer Nature, Cham, 2021, pp. 42–61.
2021 | Conference Paper | IST-REx-ID: 10216 |

Brief announcement: Non-blocking dynamic unbounded graphs with worst-case amortized bounds
B. Chatterjee, S. Peri, M. Sa, in:, 35th International Symposium on Distributed Computing, Schloss Dagstuhl - Leibniz Zentrum für Informatik, 2021.
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B. Chatterjee, S. Peri, M. Sa, in:, 35th International Symposium on Distributed Computing, Schloss Dagstuhl - Leibniz Zentrum für Informatik, 2021.
2021 | Conference Paper | IST-REx-ID: 10217 |

Lower bounds for shared-memory leader election under bounded write contention
D.-A. Alistarh, R. Gelashvili, G. Nadiradze, in:, 35th International Symposium on Distributed Computing, Schloss Dagstuhl - Leibniz Zentrum für Informatik, 2021.
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D.-A. Alistarh, R. Gelashvili, G. Nadiradze, in:, 35th International Symposium on Distributed Computing, Schloss Dagstuhl - Leibniz Zentrum für Informatik, 2021.
2021 | Conference Paper | IST-REx-ID: 10218 |

Brief announcement: Fast graphical population protocols
D.-A. Alistarh, R. Gelashvili, J. Rybicki, in:, 35th International Symposium on Distributed Computing, Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2021.
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D.-A. Alistarh, R. Gelashvili, J. Rybicki, in:, 35th International Symposium on Distributed Computing, Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2021.
2021 | Conference Paper | IST-REx-ID: 10219 |

Brief announcement: Sinkless orientation is hard also in the supported LOCAL model
J. Korhonen, A. Paz, J. Rybicki, S. Schmid, J. Suomela, in:, 35th International Symposium on Distributed Computing, Schloss Dagstuhl - Leibniz Zentrum für Informatik, 2021.
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J. Korhonen, A. Paz, J. Rybicki, S. Schmid, J. Suomela, in:, 35th International Symposium on Distributed Computing, Schloss Dagstuhl - Leibniz Zentrum für Informatik, 2021.
2021 | Journal Article | IST-REx-ID: 10221 |

Eigenstate thermalization hypothesis for Wigner matrices
G. Cipolloni, L. Erdös, D.J. Schröder, Communications in Mathematical Physics 388 (2021) 1005–1048.
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| arXiv
G. Cipolloni, L. Erdös, D.J. Schröder, Communications in Mathematical Physics 388 (2021) 1005–1048.
2021 | Journal Article | IST-REx-ID: 10222 |

The beauty of random polytopes inscribed in the 2-sphere
A. Akopyan, H. Edelsbrunner, A. Nikitenko, Experimental Mathematics (2021) 1–15.
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A. Akopyan, H. Edelsbrunner, A. Nikitenko, Experimental Mathematics (2021) 1–15.
2021 | Journal Article | IST-REx-ID: 10223 |

Cell surface and intracellular auxin signalling for H+ fluxes in root growth
L. Li, I. Verstraeten, M. Roosjen, K. Takahashi, L. Rodriguez Solovey, J. Merrin, J. Chen, L. Shabala, W. Smet, H. Ren, S. Vanneste, S. Shabala, B. De Rybel, D. Weijers, T. Kinoshita, W.M. Gray, J. Friml, Nature 599 (2021) 273–277.
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L. Li, I. Verstraeten, M. Roosjen, K. Takahashi, L. Rodriguez Solovey, J. Merrin, J. Chen, L. Shabala, W. Smet, H. Ren, S. Vanneste, S. Shabala, B. De Rybel, D. Weijers, T. Kinoshita, W.M. Gray, J. Friml, Nature 599 (2021) 273–277.
2021 | Journal Article | IST-REx-ID: 10224 |

The strongly coupled polaron on the torus: Quantum corrections to the Pekar asymptotics
D. Feliciangeli, R. Seiringer, Archive for Rational Mechanics and Analysis 242 (2021) 1835–1906.
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D. Feliciangeli, R. Seiringer, Archive for Rational Mechanics and Analysis 242 (2021) 1835–1906.
2021 | Journal Article | IST-REx-ID: 10271 |

Uncovering Key Metabolic Determinants of the Drug Interactions Between Trimethoprim and Erythromycin in Escherichia coli
Q. Qi, S.A. Angermayr, M.T. Bollenbach, Frontiers in Microbiology 12 (2021).
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Q. Qi, S.A. Angermayr, M.T. Bollenbach, Frontiers in Microbiology 12 (2021).
2021 | Journal Article | IST-REx-ID: 10280 |

Metamachines of pluripotent colloids
A. Aubret, Q. Martinet, J.A. Palacci, Nature Communications 12 (2021).
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A. Aubret, Q. Martinet, J.A. Palacci, Nature Communications 12 (2021).
2021 | Journal Article | IST-REx-ID: 10285 |

On eigenvector statistics in the spherical and truncated unitary ensembles
G. Dubach, Electronic Journal of Probability 26 (2021).
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G. Dubach, Electronic Journal of Probability 26 (2021).
2021 | Journal Article | IST-REx-ID: 10290 |

Computational toolbox for ultrastructural quantitative analysis of filament networks in cryo-ET data
G.A. Dimchev, B. Amiri, F. Fäßler, M. Falcke, F.K. Schur, Journal of Structural Biology 213 (2021).
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G.A. Dimchev, B. Amiri, F. Fäßler, M. Falcke, F.K. Schur, Journal of Structural Biology 213 (2021).
2021 | Journal Article | IST-REx-ID: 10301 |

Control of protein synthesis and memory by GluN3A-NMDA receptors through inhibition of GIT1/mTORC1 assembly
M.J. Conde-Dusman, P.N. Dey, Ó. Elía-Zudaire, L.E. Garcia Rabaneda, C. García-Lira, T. Grand, V. Briz, E.R. Velasco, R. Andero Galí, S. Niñerola, A. Barco, P. Paoletti, J.F. Wesseling, F. Gardoni, S.J. Tavalin, I. Perez-Otaño, ELife 10 (2021).
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M.J. Conde-Dusman, P.N. Dey, Ó. Elía-Zudaire, L.E. Garcia Rabaneda, C. García-Lira, T. Grand, V. Briz, E.R. Velasco, R. Andero Galí, S. Niñerola, A. Barco, P. Paoletti, J.F. Wesseling, F. Gardoni, S.J. Tavalin, I. Perez-Otaño, ELife 10 (2021).
2021 | Thesis | IST-REx-ID: 10307
Pathogenic Escherichia coli hijack the host immune response
K. Tomasek, Pathogenic Escherichia Coli Hijack the Host Immune Response, IST Austria, 2021.
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K. Tomasek, Pathogenic Escherichia Coli Hijack the Host Immune Response, IST Austria, 2021.
2021 | Journal Article | IST-REx-ID: 10310 |

Cryo-EM structure of a functional monomeric Photosystem I from Thermosynechococcus elongatus reveals red chlorophyll cluster
M.O. Çoruh, A. Frank, H. Tanaka, A. Kawamoto, E. El-Mohsnawy, T. Kato, K. Namba, C. Gerle, M.M. Nowaczyk, G. Kurisu, Communications Biology 4 (2021).
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M.O. Çoruh, A. Frank, H. Tanaka, A. Kawamoto, E. El-Mohsnawy, T. Kato, K. Namba, C. Gerle, M.M. Nowaczyk, G. Kurisu, Communications Biology 4 (2021).
2021 | Preprint | IST-REx-ID: 10316 |

Type 1 piliated uropathogenic Escherichia coli hijack the host immune response by binding to CD14
K. Tomasek, A.F. Leithner, I. Glatzová, M.S. Lukesch, C.C. Guet, M.K. Sixt, BioRxiv (n.d.).
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K. Tomasek, A.F. Leithner, I. Glatzová, M.S. Lukesch, C.C. Guet, M.K. Sixt, BioRxiv (n.d.).
2021 | Journal Article | IST-REx-ID: 10321 |

Genetic mosaic dissection of candidate genes in mice using mosaic analysis with double markers
N. Amberg, S. Hippenmeyer, STAR Protocols 2 (2021).
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N. Amberg, S. Hippenmeyer, STAR Protocols 2 (2021).
2021 | Journal Article | IST-REx-ID: 10322 |

Neuronal HSF-1 coordinates the propagation of fat desaturation across tissues to enable adaptation to high temperatures in C. elegans
L. Chauve, F. Hodge, S. Murdoch, F. Masoudzadeh, H.J. Mann, A. Lopez-Clavijo, H. Okkenhaug, G. West, B.C. Sousa, A. Segonds-Pichon, C. Li, S. Wingett, H. Kienberger, K. Kleigrewe, M. de Bono, M. Wakelam, O. Casanueva, PLoS Biology 19 (2021).
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L. Chauve, F. Hodge, S. Murdoch, F. Masoudzadeh, H.J. Mann, A. Lopez-Clavijo, H. Okkenhaug, G. West, B.C. Sousa, A. Segonds-Pichon, C. Li, S. Wingett, H. Kienberger, K. Kleigrewe, M. de Bono, M. Wakelam, O. Casanueva, PLoS Biology 19 (2021).
2021 | Conference Paper | IST-REx-ID: 10324 |

Brick: Asynchronous incentive-compatible payment channels
Z. Avarikioti, E. Kokoris Kogias, R. Wattenhofer, D. Zindros, in:, 25th International Conference on Financial Cryptography and Data Security, Springer Nature, 2021, pp. 209–230.
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Z. Avarikioti, E. Kokoris Kogias, R. Wattenhofer, D. Zindros, in:, 25th International Conference on Financial Cryptography and Data Security, Springer Nature, 2021, pp. 209–230.
2021 | Conference Paper | IST-REx-ID: 10325 |

SoK: Communication across distributed ledgers
A. Zamyatin, M. Al-Bassam, D. Zindros, E. Kokoris Kogias, P. Moreno-Sanchez, A. Kiayias, W.J. Knottenbelt, in:, 25th International Conference on Financial Cryptography and Data Security, Springer Nature, 2021, pp. 3–36.
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A. Zamyatin, M. Al-Bassam, D. Zindros, E. Kokoris Kogias, P. Moreno-Sanchez, A. Kiayias, W.J. Knottenbelt, in:, 25th International Conference on Financial Cryptography and Data Security, Springer Nature, 2021, pp. 3–36.
2021 | Journal Article | IST-REx-ID: 10326
Catabolism of strigolactones by a carboxylesterase
E. Xu, L. Chai, S. Zhang, R. Yu, X. Zhang, C. Xu, Y. Hu, Nature Plants 7 (2021) 1495–1504.
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E. Xu, L. Chai, S. Zhang, R. Yu, X. Zhang, C. Xu, Y. Hu, Nature Plants 7 (2021) 1495–1504.
2021 | Journal Article | IST-REx-ID: 10327
PbS–Pb–CuxS composites for thermoelectric application
M. Li, Y. Liu, Y. Zhang, X. Han, K. Xiao, M. Nabahat, J. Arbiol, J. Llorca, M. Ibáñez, A. Cabot, ACS Applied Materials and Interfaces 13 (2021) 51373–51382.
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M. Li, Y. Liu, Y. Zhang, X. Han, K. Xiao, M. Nabahat, J. Arbiol, J. Llorca, M. Ibáñez, A. Cabot, ACS Applied Materials and Interfaces 13 (2021) 51373–51382.
2021 | Journal Article | IST-REx-ID: 10337
PLCγ1 promotes phase separation of T cell signaling components
L. Zeng, I. Palaia, A. Šarić, X. Su, Journal of Cell Biology 220 (2021).
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L. Zeng, I. Palaia, A. Šarić, X. Su, Journal of Cell Biology 220 (2021).
2021 | Journal Article | IST-REx-ID: 10338 |

Physical modeling of multivalent interactions in the nuclear pore complex
L.K. Davis, A. Šarić, B.W. Hoogenboom, A. Zilman, Biophysical Journal 120 (2021) 1565–1577.
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L.K. Davis, A. Šarić, B.W. Hoogenboom, A. Zilman, Biophysical Journal 120 (2021) 1565–1577.
2021 | Journal Article | IST-REx-ID: 10339 |

Modelling the dynamics of vesicle reshaping and scission under osmotic shocks
C. Vanhille-Campos, A. Šarić, Soft Matter 17 (2021) 3798–3806.
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C. Vanhille-Campos, A. Šarić, Soft Matter 17 (2021) 3798–3806.
2021 | Journal Article | IST-REx-ID: 10340 |

Influence of membrane-cortex linkers on the extrusion of membrane tubes
A. Paraschiv, T.J. Lagny, C.V. Campos, E. Coudrier, P. Bassereau, A. Šarić, Biophysical Journal 120 (2021) 598–606.
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A. Paraschiv, T.J. Lagny, C.V. Campos, E. Coudrier, P. Bassereau, A. Šarić, Biophysical Journal 120 (2021) 598–606.
2021 | Conference Paper | IST-REx-ID: 10367 |

Recognizing multimodal entailment
C. Ilharco, A. Shirazi, A. Gopalan, A. Nagrani, B. Bratanič, C. Bregler, C. Liu, F. Ferreira, G. Barcik, G. Ilharco, G.F. Osang, J. Bulian, J. Frank, L. Smaira, Q. Cao, R. Marino, R. Patel, T. Leung, V. Imbrasaite, in:, 59th Annual Meeting of the Association for Computational Linguistics and the 11th International Joint Conference on Natural Language Processing, Tutorial Abstracts, Association for Computational Linguistics, 2021, pp. 29–30.
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C. Ilharco, A. Shirazi, A. Gopalan, A. Nagrani, B. Bratanič, C. Bregler, C. Liu, F. Ferreira, G. Barcik, G. Ilharco, G.F. Osang, J. Bulian, J. Frank, L. Smaira, Q. Cao, R. Marino, R. Patel, T. Leung, V. Imbrasaite, in:, 59th Annual Meeting of the Association for Computational Linguistics and the 11th International Joint Conference on Natural Language Processing, Tutorial Abstracts, Association for Computational Linguistics, 2021, pp. 29–30.
2021 | Journal Article | IST-REx-ID: 10401 |

Generation of spin currents by a temperature gradient in a two-terminal device
R.E. Barfknecht, A. Foerster, N.T. Zinner, A. Volosniev, Communications Physics 4 (2021).
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| arXiv
R.E. Barfknecht, A. Foerster, N.T. Zinner, A. Volosniev, Communications Physics 4 (2021).
2021 | Journal Article | IST-REx-ID: 10404 |

Interactive analysis of CNN robustness
S. Sietzen, M. Lechner, J. Borowski, R. Hasani, M. Waldner, Computer Graphics Forum 40 (2021) 253–264.
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S. Sietzen, M. Lechner, J. Borowski, R. Hasani, M. Waldner, Computer Graphics Forum 40 (2021) 253–264.
2021 | Journal Article | IST-REx-ID: 10406
Dissecting organismal morphogenesis by bridging genetics and biophysics
N. Mishra, C.-P.J. Heisenberg, Annual Review of Genetics 55 (2021) 209–233.
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| PubMed | Europe PMC
N. Mishra, C.-P.J. Heisenberg, Annual Review of Genetics 55 (2021) 209–233.
2021 | Conference Paper | IST-REx-ID: 10407 |

Trojan-resilience without cryptography
S. Chakraborty, S. Dziembowski, M. Gałązka, T. Lizurej, K.Z. Pietrzak, M.X. Yeo, in:, Springer Nature, 2021, pp. 397–428.
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S. Chakraborty, S. Dziembowski, M. Gałązka, T. Lizurej, K.Z. Pietrzak, M.X. Yeo, in:, Springer Nature, 2021, pp. 397–428.
2021 | Conference Paper | IST-REx-ID: 10408 |

Grafting key trees: Efficient key management for overlapping groups
J.F. Alwen, B. Auerbach, M.A. Baig, M. Cueto Noval, K. Klein, G. Pascual Perez, K.Z. Pietrzak, M. Walter, in:, 19th International Conference, Springer Nature, 2021, pp. 222–253.
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J.F. Alwen, B. Auerbach, M.A. Baig, M. Cueto Noval, K. Klein, G. Pascual Perez, K.Z. Pietrzak, M. Walter, in:, 19th International Conference, Springer Nature, 2021, pp. 222–253.
2021 | Conference Paper | IST-REx-ID: 10409 |

On treewidth, separators and Yao’s garbling
C. Kamath Hosdurg, K. Klein, K.Z. Pietrzak, in:, 19th International Conference, Springer Nature, 2021, pp. 486–517.
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C. Kamath Hosdurg, K. Klein, K.Z. Pietrzak, in:, 19th International Conference, Springer Nature, 2021, pp. 486–517.
2021 | Conference Paper | IST-REx-ID: 10410 |

The cost of adaptivity in security games on graphs
C. Kamath Hosdurg, K. Klein, K.Z. Pietrzak, M. Walter, in:, 19th International Conference, Springer Nature, 2021, pp. 550–581.
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C. Kamath Hosdurg, K. Klein, K.Z. Pietrzak, M. Walter, in:, 19th International Conference, Springer Nature, 2021, pp. 550–581.
2021 | Conference Paper | IST-REx-ID: 10414 |

On lexicographic proof rules for probabilistic termination
K. Chatterjee, E.K. Goharshady, P. Novotný, J. Zárevúcky, Đ. Žikelić, in:, 24th International Symposium on Formal Methods, Springer Nature, 2021, pp. 619–639.
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K. Chatterjee, E.K. Goharshady, P. Novotný, J. Zárevúcky, Đ. Žikelić, in:, 24th International Symposium on Formal Methods, Springer Nature, 2021, pp. 619–639.
2021 | Thesis | IST-REx-ID: 10422 |

Towards designer materials using customizable particle shape
A. Piankov, Towards Designer Materials Using Customizable Particle Shape, IST Austria, 2021.
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A. Piankov, Towards Designer Materials Using Customizable Particle Shape, IST Austria, 2021.
2021 | Thesis | IST-REx-ID: 10429 |

On achieving scalability through relaxation
G. Nadiradze, On Achieving Scalability through Relaxation, IST Austria, 2021.
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G. Nadiradze, On Achieving Scalability through Relaxation, IST Austria, 2021.
2021 | Conference Paper | IST-REx-ID: 10432 |

Elastic consistency: A practical consistency model for distributed stochastic gradient descent
G. Nadiradze, I. Markov, B. Chatterjee, V. Kungurtsev, D.-A. Alistarh, in:, Proceedings of the AAAI Conference on Artificial Intelligence, 2021, pp. 9037–9045.
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G. Nadiradze, I. Markov, B. Chatterjee, V. Kungurtsev, D.-A. Alistarh, in:, Proceedings of the AAAI Conference on Artificial Intelligence, 2021, pp. 9037–9045.
2021 | Conference Paper | IST-REx-ID: 10435 |

Asynchronous decentralized SGD with quantized and local updates
G. Nadiradze, A. Sabour, P. Davies, S. Li, D.-A. Alistarh, in:, 35th Conference on Neural Information Processing Systems, NeurIPS, 2021.
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G. Nadiradze, A. Sabour, P. Davies, S. Li, D.-A. Alistarh, in:, 35th Conference on Neural Information Processing Systems, NeurIPS, 2021.
2021 | Journal Article | IST-REx-ID: 10527 |

Unconventional superconductivity in systems with annular Fermi surfaces: Application to rhombohedral trilayer graphene
A. Ghazaryan, T. Holder, M. Serbyn, E. Berg, Physical Review Letters 127 (2021).
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A. Ghazaryan, T. Holder, M. Serbyn, E. Berg, Physical Review Letters 127 (2021).
2021 | Journal Article | IST-REx-ID: 10530 |

Disentangling cadherin-mediated cell-cell interactions in collective cancer cell migration
T. Zisis, D. Brückner, T. Brandstätter, W.X. Siow, J. d’Alessandro, A.M. Vollmar, C.P. Broedersz, S. Zahler, Biophysical Journal (2021).
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T. Zisis, D. Brückner, T. Brandstätter, W.X. Siow, J. d’Alessandro, A.M. Vollmar, C.P. Broedersz, S. Zahler, Biophysical Journal (2021).
2021 | Journal Article | IST-REx-ID: 10534 |

Fullerene derivatives with oligoethylene-glycol side chains: An investigation on the origin of their outstanding transport properties
J. Dong, S. Sami, D. Balazs, R. Alessandri, F. Jahani, L. Qiu, S.J. Marrink, R.W.A. Havenith, J.C. Hummelen, M.A. Loi, G. Portale, Journal of Materials Chemistry C 9 (2021) 16217–16225.
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J. Dong, S. Sami, D. Balazs, R. Alessandri, F. Jahani, L. Qiu, S.J. Marrink, R.W.A. Havenith, J.C. Hummelen, M.A. Loi, G. Portale, Journal of Materials Chemistry C 9 (2021) 16217–16225.
2021 | Journal Article | IST-REx-ID: 10537 |

Bosonization of fermionic many-body dynamics
N.P. Benedikter, P.T. Nam, M. Porta, B. Schlein, R. Seiringer, Annales Henri Poincaré (2021).
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| arXiv
N.P. Benedikter, P.T. Nam, M. Porta, B. Schlein, R. Seiringer, Annales Henri Poincaré (2021).
2021 | Journal Article | IST-REx-ID: 10545 |

Duality approach to quantum annealing of the 3-variable exclusive-or satisfiability problem (3-XORSAT)
R.A. Medina Ramos, M. Serbyn, Physical Review A 104 (2021).
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R.A. Medina Ramos, M. Serbyn, Physical Review A 104 (2021).
2021 | Preprint | IST-REx-ID: 10547 |

Global existence analysis of energy-reaction-diffusion systems
J.L. Fischer, K. Hopf, M. Kniely, A. Mielke, ArXiv (n.d.).
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| arXiv
J.L. Fischer, K. Hopf, M. Kniely, A. Mielke, ArXiv (n.d.).
2021 | Journal Article | IST-REx-ID: 10549 |

Optimal homogenization rates in stochastic homogenization of nonlinear uniformly elliptic equations and systems
J.L. Fischer, S. Neukamm, Archive for Rational Mechanics and Analysis 242 (2021) 343–452.
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| arXiv
J.L. Fischer, S. Neukamm, Archive for Rational Mechanics and Analysis 242 (2021) 343–452.
2021 | Preprint | IST-REx-ID: 10550 |

Global renormalised solutions and equilibration of reaction-diffusion systems with non-linear diffusion
K. Fellner, J.L. Fischer, M. Kniely, B.Q. Tang, ArXiv (n.d.).
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K. Fellner, J.L. Fischer, M. Kniely, B.Q. Tang, ArXiv (n.d.).
2021 | Preprint | IST-REx-ID: 10551 |

The Dean-Kawasaki equation and the structure of density fluctuations in systems of diffusing particles
F. Cornalba, J.L. Fischer, ArXiv (n.d.).
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| arXiv
F. Cornalba, J.L. Fischer, ArXiv (n.d.).
2021 | Journal Article | IST-REx-ID: 9290 |

AGC kinases and MAB4/MEL proteins maintain PIN polarity by limiting lateral diffusion in plant cells
M. Glanc, K. Van Gelderen, L. Hörmayer, S. Tan, S. Naramoto, X. Zhang, D. Domjan, L. Vcelarova, R. Hauschild, A.J. Johnson, E. de Koning, M. van Dop, E. Rademacher, S. Janson, X. Wei, G. Molnar, M. Fendrych, B. De Rybel, R. Offringa, J. Friml, Current Biology 31 (2021) 1918–1930.
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M. Glanc, K. Van Gelderen, L. Hörmayer, S. Tan, S. Naramoto, X. Zhang, D. Domjan, L. Vcelarova, R. Hauschild, A.J. Johnson, E. de Koning, M. van Dop, E. Rademacher, S. Janson, X. Wei, G. Molnar, M. Fendrych, B. De Rybel, R. Offringa, J. Friml, Current Biology 31 (2021) 1918–1930.