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6702 Publications


2015 | Research Data Reference | IST-REx-ID: 9712
Other fitness models for comparison & for interacting TFBSs
M. Tugrul, T. Paixao, N.H. Barton, G. Tkačik, (2015).
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2015 | Research Data Reference | IST-REx-ID: 9714
An exploration of the universe of polyglutamine structures - submission to PLOS journals
À. Gómez Sicilia, M.K. Sikora, M. Cieplak, M. Carrión Vázquez, (2015).
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2015 | Research Data Reference | IST-REx-ID: 9715
Mathematical inference of the results
B. Trubenova, S. Novak, R. Hager, (2015).
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2015 | Research Data Reference | IST-REx-ID: 9718
Supporting information text
T. Friedlander, A.E. Mayo, T. Tlusty, U. Alon, (2015).
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2015 | Journal Article | IST-REx-ID: 1827 | OA
Evolution of bow-tie architectures in biology
T. Friedlander, A. Mayo, T. Tlusty, U. Alon, PLoS Computational Biology 11 (2015).
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2015 | Journal Article | IST-REx-ID: 1809 | OA
Indirect genetic effects and the dynamics of social interactions
B. Trubenova, S. Novak, R. Hager, PLoS One 10 (2015).
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2015 | Research Data Reference | IST-REx-ID: 9772
Description of the agent based simulations
B. Trubenova, S. Novak, R. Hager, (2015).
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2015 | Research Data Reference | IST-REx-ID: 9773
Evolutionary simulation code
T. Friedlander, A.E. Mayo, T. Tlusty, U. Alon, (2015).
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2015 | Journal Article | IST-REx-ID: 9575 | OA
Cycles and matchings in randomly perturbed digraphs and hypergraphs
M. Krivelevich, M.A. Kwan, B. Sudakov, Electronic Notes in Discrete Mathematics 49 (2015) 181–187.
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2015 | Journal Article | IST-REx-ID: 9688 | OA
Solid-liquid interfacial free energy out of equilibrium
B. Cheng, G.A. Tribello, M. Ceriotti, Physical Review B - Condensed Matter and Materials Physics 92 (2015).
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2015 | Journal Article | IST-REx-ID: 1793 | OA View | Files available | DOI
 

2015 | Research Data Reference | IST-REx-ID: 9737
Root traits computed by DynamicRoots for the maize root shown in fig 2
O. Symonova, C. Topp, H. Edelsbrunner, (2015).
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2015 | Journal Article | IST-REx-ID: 9532 | OA
Evolution and function of genomic imprinting in plants
J.A. Rodrigues, D. ZILBERMAN, Genes and Development 29 (2015) 2517–2531.
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2015 | Journal Article | IST-REx-ID: 1619 | OA
Quantifying the determinants of evolutionary dynamics leading to drug resistance
G. Chevereau, M. Lukacisinova, T. Batur, A. Guvenek, D. Ayhan, E. Toprak, M.T. Bollenbach, PLoS Biology 13 (2015).
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2014 | Journal Article | IST-REx-ID: 2261 | OA
DICE, an efficient system for iterative genomic editing in human pluripotent stem cells
F. Zhu, M. Gamboa, A. Farruggio, S. Hippenmeyer, B. Tasic, B. Schüle, Y. Chen Tsai, M. Calos, Nucleic Acids Research 42 (2014).
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2014 | Book Chapter | IST-REx-ID: 2265
Molecular pathways controlling the sequential steps of cortical projection neuron migration
S. Hippenmeyer, in:, L. Nguyen (Ed.), Cellular and Molecular Control of Neuronal Migration, Springer, 2014, pp. 1–24.
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2014 | Conference Paper | IST-REx-ID: 2275 | OA
Partial enumeration and curvature regularization
C. Olsson, J. Ulen, Y. Boykov, V. Kolmogorov, in:, IEEE, 2014, pp. 2936–2943.
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2014 | Journal Article | IST-REx-ID: 2281 | OA
On the mass concentration for Bose-Einstein condensates with attractive interactions
Y. Guo, R. Seiringer, Letters in Mathematical Physics 104 (2014) 141–156.
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2014 | Journal Article | IST-REx-ID: 2285 | OA
Morpho-physiological criteria divide dentate gyrus interneurons into classes
J. Hosp, M. Strüber, Y. Yanagawa, K. Obata, I. Vida, P.M. Jonas, M. Bartos, Hippocampus 23 (2014) 189–203.
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2014 | Journal Article | IST-REx-ID: 2407 | OA
Equivalence of two definitions of the effective mass of a polaron
É. Lieb, R. Seiringer, Journal of Statistical Physics 154 (2014) 51–57.
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2014 | Journal Article | IST-REx-ID: 248 | OA
Rational points on pencils of conics and quadrics with many degenerate fibres
T.D. Browning, L. Matthiesen, A. Skorobogatov, Annals of Mathematics 180 (2014) 381–402.
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2014 | Journal Article | IST-REx-ID: 249
Cubic hypersurfaces and a version of the circle method for number fields
T.D. Browning, P. Vishe, Duke Mathematical Journal 163 (2014) 1825–1883.
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2014 | Journal Article | IST-REx-ID: 252
Counting rational points on del Pezzo surfaces with a conic bundle structure
T.D. Browning, M. Jones, Acta Arithmetica 163 (2014) 271–298.
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2014 | Journal Article | IST-REx-ID: 254
The polynomial sieve and equal sums of like polynomials
T.D. Browning, International Mathematics Research Notices 2015 (2014) 1987–2019.
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2014 | Journal Article | IST-REx-ID: 255
Rational points on intersections of cubic and quadric hypersurfaces
T.D. Browning, R. Dietmann, R. Heath Brown, Journal of the Institute of Mathematics of Jussieu 14 (2014) 703–749.
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2014 | Journal Article | IST-REx-ID: 2699 | OA
Universality of general β-ensembles
L. Erdös, P. Bourgade, H. Yau, Duke Mathematical Journal 163 (2014) 1127–1190.
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2014 | Journal Article | IST-REx-ID: 2716 | OA
Strategy synthesis for multi-dimensional quantitative objectives
K. Chatterjee, M. Randour, J. Raskin, Acta Informatica 51 (2014) 129–163.
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2014 | Journal Article | IST-REx-ID: 2852
Robust multi-property combiners for hash functions
M. Fischlin, A. Lehmann, K.Z. Pietrzak, Journal of Cryptology 27 (2014) 397–428.
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2014 | Conference Paper | IST-REx-ID: 2905 | OA
Persistent homology: Theory and practice
H. Edelsbrunner, D. Morozovy, in:, European Mathematical Society Publishing House, 2014, pp. 31–50.
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2014 | Journal Article | IST-REx-ID: 8021 | OA
Activity-dependent dendritic spine neck changes are correlated with synaptic strength
R. Araya, T.P. Vogels, R. Yuste, Proceedings of the National Academy of Sciences 111 (2014) E2895–E2904.
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2014 | Journal Article | IST-REx-ID: 8022 | OA
Optimal control of transient dynamics in balanced networks supports generation of complex movements
G. Hennequin, T.P. Vogels, W. Gerstner, Neuron 82 (2014) 1394–1406.
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2014 | Journal Article | IST-REx-ID: 8023 | OA
Connection-type-specific biases make uniform random network models consistent with cortical recordings
C. Tomm, M. Avermann, C. Petersen, W. Gerstner, T.P. Vogels, Journal of Neurophysiology 112 (2014) 1801–1814.
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2014 | Conference Paper | IST-REx-ID: 8044 | OA
Structure of the excitation spectrum for many-body quantum systems
R. Seiringer, in:, Proceeding of the International Congress of Mathematicans, Kyung Moon SA, 2014, pp. 1175–1194.
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2014 | Journal Article | IST-REx-ID: 809
Cryo electron microscopy of tubular arrays of HIV-1 Gag resolves structures essential for immature virus assembly
T. Bharata, L. Menendez, W. Hagena, V. Luxd, S. Igonete, M. Schorba, F.K. Schur, H. Kraüsslich, J. Briggsa, PNAS 111 (2014) 8233–8238.
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2014 | Journal Article | IST-REx-ID: 8244
Generation of a canine anti-EGFR (ErbB-1) antibody for passive immunotherapy in dog cancer patients
J. Singer, J. Singer, W. Wang, M. Weichselbaumer, M. Matz, A. Mader, W. Steinfellner, S. Meitz, D. Mechtcheriakova, Y. Sobanov, M. Willmann, T. Stockner, E. Spillner, R. Kunert, E. Jensen-Jarolim, Molecular Cancer Therapeutics 13 (2014) 1777–1790.
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2014 | Journal Article | IST-REx-ID: 845
Crossing-over in a hypervariable species preferentially occurs in regions of high local similarity
V. Seplyarskiy, M. Logacheva, A. Penin, M. Baranová, E. Leushkin, N. Demidenko, A. Klepikova, F. Kondrashov, A. Kondrashov, T. James, Molecular Biology and Evolution 31 (2014) 3016–3025.
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2014 | Journal Article | IST-REx-ID: 8458
Atomic model of a cell-wall cross-linking enzyme in complex with an intact bacterial peptidoglycan
P. Schanda, S. Triboulet, C. Laguri, C.M. Bougault, I. Ayala, M. Callon, M. Arthur, J.-P. Simorre, Journal of the American Chemical Society 136 (2014) 17852–17860.
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2014 | Journal Article | IST-REx-ID: 8459
Relax: The analysis of biomolecular kinetics and thermodynamics using NMR relaxation dispersion data
S. Morin, T.E. Linnet, M. Lescanne, P. Schanda, G.S. Thompson, M. Tollinger, K. Teilum, S. Gagné, D. Marion, C. Griesinger, M. Blackledge, E.J. d’Auvergne, Bioinformatics 30 (2014) 2219–2220.
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2014 | Journal Article | IST-REx-ID: 8460
Probing transient conformational states of proteins by solid-state R1ρ relaxation-dispersion NMR spectroscopy
P. Ma, J.D. Haller, J. Zajakala, P. Macek, A.C. Sivertsen, D. Willbold, J. Boisbouvier, P. Schanda, Angewandte Chemie International Edition 53 (2014) 4312–4317.
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2014 | Journal Article | IST-REx-ID: 8500
Arnol′d diffusion in a pendulum lattice
V. Kaloshin, M. Levi, M. Saprykina, Communications on Pure and Applied Mathematics 67 (2014) 748–775.
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2014 | Journal Article | IST-REx-ID: 8501
Generic fast diffusion for a class of non-convex Hamiltonians with two degrees of freedom
A. Bounemoura, V. Kaloshin, Moscow Mathematical Journal 14 (2014) 181–203.
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2014 | Journal Article | IST-REx-ID: 852
Long-Term asymmetrical acceleration of protein evolution after gene duplication
O. Rosello, F. Kondrashov, Genome Biology and Evolution 6 (2014) 1949–1955.
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2014 | Journal Article | IST-REx-ID: 856
Duplication of a promiscuous transcription factor drives the emergence of a new regulatory network
K. Pougach, A. Voet, F. Kondrashov, K. Voordeckers, J. Christiaens, B. Baying, V. Bénès, R. Sakai, J. Aerts, B. Zhu, P. Van Dijck, K. Verstrepen, Nature Communications 5 (2014).
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2014 | Journal Article | IST-REx-ID: 863
The ctenophore genome and the evolutionary origins of neural systems
Moroz L, Kocot K, Citarella M, Dosung S, Norekian T, Povolotskaya I, Grigorenko A, Dailey C, Berezikov E, Buckley K, Ptitsyn A, Reshetov D, Mukherjee K, Moroz T, Bobkova Y, Yu F, Kapitonov V, Jurka J, Bobkov Y, Swore J, Girardo D, Fodor A, Gusev F, Sanford R, Bruders R, Kittler E, Mills C, Rast J, Derelle R, Solovyev V, Kondrashov F, Swalla B, Sweedler J, Rogaev E, Halanych K, Kohn A. 2014. The ctenophore genome and the evolutionary origins of neural systems. Nature. 510(7503), 109–114.
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2014 | Journal Article | IST-REx-ID: 865
Anti leprosy drug clofazimine inhibits growth of triple-negative breast cancer cells via inhibition of canonical Wnt signaling
A. Koval, P. Vlasov, P. Shichkova, S. Khunderyakova, Y. Markov, J. Panchenko, A. Volodina, F. Kondrashov, V. Katanaev, Biochemical Pharmacology 87 (2014) 571–578.
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2014 | Conference Paper | IST-REx-ID: 1702 | OA
Generalised interpolation by solving recursion free-horn clauses
A. Gupta, C. Popeea, A. Rybalchenko, in:, Electronic Proceedings in Theoretical Computer Science, EPTCS, Open Publishing, 2014, pp. 31–38.
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2014 | Conference Paper | IST-REx-ID: 1708
Spatio-temporal representations of uncertainty in spiking neural networks
C. Savin, S. Denève, in:, Neural Information Processing Systems, 2014, pp. 2024–2032.
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2014 | Journal Article | IST-REx-ID: 1733 | OA
Interface simulation distances
P. Cerny, M. Chmelik, T.A. Henzinger, A. Radhakrishna, Theoretical Computer Science 560 (2014) 348–363.
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2014 | Journal Article | IST-REx-ID: 1761 | OA
PtSi clustering in silicon probed by transport spectroscopy
M. Mongillo, P. Spathis, G. Katsaros, S. De Franceschi, P. Gentile, R. Rurali, X. Cartoixà, Physical Review X 3 (2014).
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2014 | Journal Article | IST-REx-ID: 1791
Off-target effect of doublecortin family shRNA on neuronal migration associated with endogenous MicroRNA dysregulation
S. Baek, G. Kerjan, S. Bielas, J. Lee, A. Fenstermaker, G. Novarino, J. Gleeson, Neuron 82 (2014) 1255–1262.
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