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7270 Publications
2021 | Thesis | IST-REx-ID: 9056 |

Multi-cover persistence and Delaunay mosaics
G.F. Osang, Multi-Cover Persistence and Delaunay Mosaics, IST Austria, 2021.
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G.F. Osang, Multi-Cover Persistence and Delaunay Mosaics, IST Austria, 2021.
2021 | Preprint | IST-REx-ID: 9082 |

Simultaneous identification of brain cell type and lineage via single cell RNA sequencing
D.J. Anderson, F. Pauler, A. McKenna, J. Shendure, S. Hippenmeyer, M.S. Horwitz, BioRxiv (n.d.).
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D.J. Anderson, F. Pauler, A. McKenna, J. Shendure, S. Hippenmeyer, M.S. Horwitz, BioRxiv (n.d.).
2021 | Journal Article | IST-REx-ID: 9093 |

Shape of a sound wave in a weakly-perturbed Bose gas
O. Marchukov, A. Volosniev, SciPost Physics 10 (2021).
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| arXiv
O. Marchukov, A. Volosniev, SciPost Physics 10 (2021).
2021 | Journal Article | IST-REx-ID: 9097 |

Role of subnetworks mediated by TNF α, IL-23/IL-17 and IL-15 in a network involved in the pathogenesis of psoriasis
R. Pandey, Y. Al-Nuaimi, R.K. Mishra, S.K. Spurgeon, M. Goodfellow, Scientific Reports 11 (2021).
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R. Pandey, Y. Al-Nuaimi, R.K. Mishra, S.K. Spurgeon, M. Goodfellow, Scientific Reports 11 (2021).
2021 | Journal Article | IST-REx-ID: 9098 |

On the volume of projections of the cross-polytope
G. Ivanov, Discrete Mathematics 344 (2021).
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| arXiv
G. Ivanov, Discrete Mathematics 344 (2021).
2021 | Journal Article | IST-REx-ID: 9099 |

Lifting automorphisms on Abelian varieties as derived autoequivalences
T.K. Srivastava, Archiv Der Mathematik 116 (2021) 515–527.
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T.K. Srivastava, Archiv Der Mathematik 116 (2021) 515–527.
2021 | Journal Article | IST-REx-ID: 9100 |

Speciation in marine environments: Diving under the surface
R. Faria, K. Johannesson, S. Stankowski, Journal of Evolutionary Biology 34 (2021) 4–15.
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R. Faria, K. Johannesson, S. Stankowski, Journal of Evolutionary Biology 34 (2021) 4–15.
2021 | Journal Article | IST-REx-ID: 9101 |

Early life differences in behavioral predispositions in two Alligatoridae species
S.A. Reber, J. Oh, J. Janisch, C. Stevenson, S. Foggett, A. Wilkinson, Animal Cognition 24 (2021) 753–764.
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S.A. Reber, J. Oh, J. Janisch, C. Stevenson, S. Foggett, A. Wilkinson, Animal Cognition 24 (2021) 753–764.
2021 | Journal Article | IST-REx-ID: 9111 |

Probabilistic convergence and stability of random mapper graphs
A. Brown, O. Bobrowski, E. Munch, B. Wang, Journal of Applied and Computational Topology 5 (2021) 99–140.
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| arXiv
A. Brown, O. Bobrowski, E. Munch, B. Wang, Journal of Applied and Computational Topology 5 (2021) 99–140.
2021 | Journal Article | IST-REx-ID: 9113
Ambient condition alcohol reforming to hydrogen with electricity output
Z.M. Manzoor Bhat, R. Thimmappa, N.C. Dargily, A. Raafik, A.R. Kottaichamy, M.C. Devendrachari, M. Itagi, H. Makri Nimbegondi Kotresh, S.A. Freunberger, M. Ottakam Thotiyl, ACS Sustainable Chemistry and Engineering 9 (2021) 3104–3111.
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Z.M. Manzoor Bhat, R. Thimmappa, N.C. Dargily, A. Raafik, A.R. Kottaichamy, M.C. Devendrachari, M. Itagi, H. Makri Nimbegondi Kotresh, S.A. Freunberger, M. Ottakam Thotiyl, ACS Sustainable Chemistry and Engineering 9 (2021) 3104–3111.
2021 | Journal Article | IST-REx-ID: 9118 |

Exploiting the lability of metal halide perovskites for doping semiconductor nanocomposites
M. Calcabrini, A. Genc, Y. Liu, T. Kleinhanns, S. Lee, D.N. Dirin, Q.A. Akkerman, M.V. Kovalenko, J. Arbiol, M. Ibáñez, ACS Energy Letters 6 (2021) 581–587.
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M. Calcabrini, A. Genc, Y. Liu, T. Kleinhanns, S. Lee, D.N. Dirin, Q.A. Akkerman, M.V. Kovalenko, J. Arbiol, M. Ibáñez, ACS Energy Letters 6 (2021) 581–587.
2021 | Journal Article | IST-REx-ID: 9119 |

DILS: Demographic inferences with linked selection by using ABC
C. Fraisse, I. Popovic, C. Mazoyer, B. Spataro, S. Delmotte, J. Romiguier, É. Loire, A. Simon, N. Galtier, L. Duret, N. Bierne, X. Vekemans, C. Roux, Molecular Ecology Resources 21 (2021) 2629–2644.
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C. Fraisse, I. Popovic, C. Mazoyer, B. Spataro, S. Delmotte, J. Romiguier, É. Loire, A. Simon, N. Galtier, L. Duret, N. Bierne, X. Vekemans, C. Roux, Molecular Ecology Resources 21 (2021) 2629–2644.
2021 | Journal Article | IST-REx-ID: 9121 |

The BCS energy gap at low density
A.B. Lauritsen, Letters in Mathematical Physics 111 (2021).
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A.B. Lauritsen, Letters in Mathematical Physics 111 (2021).
2021 | Journal Article | IST-REx-ID: 9151 |

Distortions of the rain distribution with warming, with and without self‐aggregation
B. Fildier, W.D. Collins, C.J. Muller, Journal of Advances in Modeling Earth Systems 13 (2021).
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B. Fildier, W.D. Collins, C.J. Muller, Journal of Advances in Modeling Earth Systems 13 (2021).
2021 | Journal Article | IST-REx-ID: 9158 |

Disentanglement approach to quantum spin ground states: Field theory and stochastic simulation
S. De Nicola, Journal of Statistical Mechanics: Theory and Experiment 2021 (2021).
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S. De Nicola, Journal of Statistical Mechanics: Theory and Experiment 2021 (2021).
2021 | Journal Article | IST-REx-ID: 9168 |

The rates of introgression and barriers to genetic exchange between hybridizing species: Sex chromosomes vs autosomes
C. Fraisse, H. Sachdeva, Genetics 217 (2021).
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C. Fraisse, H. Sachdeva, Genetics 217 (2021).
2021 | Journal Article | IST-REx-ID: 9173 |

Pathologies of the Hilbert scheme of points of a supersingular Enriques surface
T.K. Srivastava, Bulletin Des Sciences Mathematiques 167 (2021).
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| arXiv
T.K. Srivastava, Bulletin Des Sciences Mathematiques 167 (2021).
2021 | Journal Article | IST-REx-ID: 9188 |

Inducible uniparental chromosome disomy to probe genomic imprinting at single-cell level in brain and beyond
F. Pauler, Q. Hudson, S. Laukoter, S. Hippenmeyer, Neurochemistry International 145 (2021).
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F. Pauler, Q. Hudson, S. Laukoter, S. Hippenmeyer, Neurochemistry International 145 (2021).
2021 | Journal Article | IST-REx-ID: 9189
INDITTO2 transposon conveys auxin-mediated DRO1 transcription for rice drought avoidance
Zhao Y, Wu L, Fu Q, Wang D, Li J, Yao B, Yu S, Jiang L, Qian J, Zhou X, Han L, Zhao S, Ma C, Zhang Y, Luo C, Dong Q, Li S, Zhang L, Jiang X, Li Y, Luo H, Li K, Yang J, Luo Q, Li L, Peng S, Huang H, Zuo Z, Liu C, Wang L, Li C, He X, Friml J, Du Y. 2021. INDITTO2 transposon conveys auxin-mediated DRO1 transcription for rice drought avoidance. Plant, Cell & Environment. 44(6), 1846–1857.
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Zhao Y, Wu L, Fu Q, Wang D, Li J, Yao B, Yu S, Jiang L, Qian J, Zhou X, Han L, Zhao S, Ma C, Zhang Y, Luo C, Dong Q, Li S, Zhang L, Jiang X, Li Y, Luo H, Li K, Yang J, Luo Q, Li L, Peng S, Huang H, Zuo Z, Liu C, Wang L, Li C, He X, Friml J, Du Y. 2021. INDITTO2 transposon conveys auxin-mediated DRO1 transcription for rice drought avoidance. Plant, Cell & Environment. 44(6), 1846–1857.
2021 | Preprint | IST-REx-ID: 9199 |

Equidistribution and freeness on Grassmannians
T.D. Browning, T. Horesh, F.A. Wilsch, ArXiv (n.d.).
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T.D. Browning, T. Horesh, F.A. Wilsch, ArXiv (n.d.).
2021 | Conference Paper | IST-REx-ID: 9200 |

Synthesis of hybrid automata with affine dynamics from time-series data
M. Garcia Soto, T.A. Henzinger, C. Schilling, in:, HSCC ’21: Proceedings of the 24th International Conference on Hybrid Systems: Computation and Control, Association for Computing Machinery, n.d., p. 2102.12734.
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| arXiv
M. Garcia Soto, T.A. Henzinger, C. Schilling, in:, HSCC ’21: Proceedings of the 24th International Conference on Hybrid Systems: Computation and Control, Association for Computing Machinery, n.d., p. 2102.12734.
2021 | Conference Paper | IST-REx-ID: 9202 |

Hybridization for stability verification of nonlinear switched systems
M. Garcia Soto, P. Prabhakar, in:, 2020 IEEE Real-Time Systems Symposium, IEEE, 2021, pp. 244–256.
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M. Garcia Soto, P. Prabhakar, in:, 2020 IEEE Real-Time Systems Symposium, IEEE, 2021, pp. 244–256.
2021 | Journal Article | IST-REx-ID: 9205 |

Cryo-EM grid optimization for membrane proteins
D. Kampjut, J. Steiner, L.A. Sazanov, IScience 24 (2021).
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D. Kampjut, J. Steiner, L.A. Sazanov, IScience 24 (2021).
2021 | Journal Article | IST-REx-ID: 9206 |

Synthesis, bottom up assembly and thermoelectric properties of Sb-doped PbS nanocrystal building blocks
D. Cadavid, K. Wei, Y. Liu, Y. Zhang, M. Li, A. Genç, T. Berestok, M. Ibáñez, A. Shavel, G.S. Nolas, A. Cabot, Materials 14 (2021).
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D. Cadavid, K. Wei, Y. Liu, Y. Zhang, M. Li, A. Genç, T. Berestok, M. Ibáñez, A. Shavel, G.S. Nolas, A. Cabot, Materials 14 (2021).
2021 | Journal Article | IST-REx-ID: 9207 |

Experimental measurements in plane Couette-Poiseuille flow: Dynamics of the large- and small-scale flow
L. Klotz, A.M. Pavlenko, J.E. Wesfreid, Journal of Fluid Mechanics 912 (2021).
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L. Klotz, A.M. Pavlenko, J.E. Wesfreid, Journal of Fluid Mechanics 912 (2021).
2021 | Conference Paper | IST-REx-ID: 9210
Does SGD implicitly optimize for smoothness?
V. Volhejn, C. Lampert, in:, 42nd German Conference on Pattern Recognition, Springer, 2021, pp. 246–259.
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V. Volhejn, C. Lampert, in:, 42nd German Conference on Pattern Recognition, Springer, 2021, pp. 246–259.
2021 | Journal Article | IST-REx-ID: 9224 |

Distinguishing localization from chaos: Challenges in finite-size systems
D.A. Abanin, J.H. Bardarson, G. De Tomasi, S. Gopalakrishnan, V. Khemani, S.A. Parameswaran, F. Pollmann, A.C. Potter, M. Serbyn, R. Vasseur, Annals of Physics 427 (2021).
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D.A. Abanin, J.H. Bardarson, G. De Tomasi, S. Gopalakrishnan, V. Khemani, S.A. Parameswaran, F. Pollmann, A.C. Potter, M. Serbyn, R. Vasseur, Annals of Physics 427 (2021).
2021 | Conference Paper | IST-REx-ID: 9227
Experimental evaluation of a local search approximation algorithm for the multiway cut problem
A. Bloch-Hansen, N. Samei, R. Solis-Oba, in:, Conference on Algorithms and Discrete Applied Mathematics, Springer Nature, 2021, pp. 346–358.
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A. Bloch-Hansen, N. Samei, R. Solis-Oba, in:, Conference on Algorithms and Discrete Applied Mathematics, Springer Nature, 2021, pp. 346–358.
2021 | Preprint | IST-REx-ID: 9230 |

Maxima of a random model of the Riemann zeta function over intervals of varying length
L.-P. Arguin, G. Dubach, L. Hartung, ArXiv (n.d.).
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L.-P. Arguin, G. Dubach, L. Hartung, ArXiv (n.d.).
2021 | Journal Article | IST-REx-ID: 9234 |

New inertial projection methods for solving multivalued variational inequality problems beyond monotonicity
C. Izuchukwu, Y. Shehu, Networks and Spatial Economics 21 (2021) 291–323.
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C. Izuchukwu, Y. Shehu, Networks and Spatial Economics 21 (2021) 291–323.
2021 | Journal Article | IST-REx-ID: 9235
Effect of the annealing atmosphere on crystal phase and thermoelectric properties of copper sulfide
M. Li, Y. Liu, Y. Zhang, X. Han, T. Zhang, Y. Zuo, C. Xie, K. Xiao, J. Arbiol, J. Llorca, M. Ibáñez, J. Liu, A. Cabot, ACS Nano 15 (2021) 4967–4978.
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| PubMed | Europe PMC
M. Li, Y. Liu, Y. Zhang, X. Han, T. Zhang, Y. Zuo, C. Xie, K. Xiao, J. Arbiol, J. Llorca, M. Ibáñez, J. Liu, A. Cabot, ACS Nano 15 (2021) 4967–4978.
2021 | Preprint | IST-REx-ID: 9238 |

A genetic program boosts mitochondrial function to power macrophage tissue invasion
S. Emtenani, E.T. Martin, A. György, J. Bicher, J.-W. Genger, T.R. Hurd, T. Köcher, A. Bergthaler, P. Rangan, D.E. Siekhaus, BioRxiv (n.d.).
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S. Emtenani, E.T. Martin, A. György, J. Bicher, J.-W. Genger, T.R. Hurd, T. Köcher, A. Bergthaler, P. Rangan, D.E. Siekhaus, BioRxiv (n.d.).
2021 | Journal Article | IST-REx-ID: 9240 |

Well-posedness for a regularised inertial Dean–Kawasaki model for slender particles in several space dimensions
F. Cornalba, T. Shardlow, J. Zimmer, Journal of Differential Equations 284 (2021) 253–283.
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F. Cornalba, T. Shardlow, J. Zimmer, Journal of Differential Equations 284 (2021) 253–283.
2021 | Journal Article | IST-REx-ID: 9241 |

Robust and practical measurement of volume transport parameters in solid photo-polymer materials for 3D printing
O. Elek, R. Zhang, D. Sumin, K. Myszkowski, B. Bickel, A. Wilkie, J. Křivánek, T. Weyrich, Optics Express 29 (2021) 7568–7588.
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O. Elek, R. Zhang, D. Sumin, K. Myszkowski, B. Bickel, A. Wilkie, J. Křivánek, T. Weyrich, Optics Express 29 (2021) 7568–7588.
2021 | Journal Article | IST-REx-ID: 9242 |

Frequency-multiplexed hybrid optical entangled source based on the Pockels effect
A.R. Rueda Sanchez, Physical Review A 103 (2021).
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| arXiv
A.R. Rueda Sanchez, Physical Review A 103 (2021).
2021 | Journal Article | IST-REx-ID: 9243 |

Real time monitoring of peptidoglycan synthesis by membrane-reconstituted penicillin binding proteins
V.M. Hernández-Rocamora, N.S. Baranova, K. Peters, E. Breukink, M. Loose, W. Vollmer, ELife 10 (2021).
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V.M. Hernández-Rocamora, N.S. Baranova, K. Peters, E. Breukink, M. Loose, W. Vollmer, ELife 10 (2021).
2021 | Journal Article | IST-REx-ID: 9244 |

DUCT reveals architectural mechanisms contributing to bile duct recovery in a mouse model for alagille syndrome
S. Hankeova, J. Salplachta, T. Zikmund, M. Kavkova, N. Van Hul, A. Brinek, V. Smekalova, J. Laznovsky, F. Dawit, J. Jaros, V. Bryja, U. Lendahl, E. Ellis, A. Nemeth, B. Fischler, E.B. Hannezo, J. Kaiser, E.R. Andersson, ELife 10 (2021).
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| PubMed | Europe PMC
S. Hankeova, J. Salplachta, T. Zikmund, M. Kavkova, N. Van Hul, A. Brinek, V. Smekalova, J. Laznovsky, F. Dawit, J. Jaros, V. Bryja, U. Lendahl, E. Ellis, A. Nemeth, B. Fischler, E.B. Hannezo, J. Kaiser, E.R. Andersson, ELife 10 (2021).
2021 | Journal Article | IST-REx-ID: 9246 |

Derivation of the Landau–Pekar equations in a many-body mean-field limit
N.K. Leopold, D.J. Mitrouskas, R. Seiringer, Archive for Rational Mechanics and Analysis 240 (2021) 383–417.
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| DOI
| arXiv
N.K. Leopold, D.J. Mitrouskas, R. Seiringer, Archive for Rational Mechanics and Analysis 240 (2021) 383–417.
2021 | Journal Article | IST-REx-ID: 9252 |

Polygenic local adaptation in metapopulations: A stochastic eco‐evolutionary model
E. Szep, H. Sachdeva, N.H. Barton, Evolution 75 (2021) 1030–1045.
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E. Szep, H. Sachdeva, N.H. Barton, Evolution 75 (2021) 1030–1045.
2021 | Conference Paper | IST-REx-ID: 9253 |

Country-wide mobility changes observed using mobile phone data during COVID-19 pandemic
G. Heiler, T. Reisch, J. Hurt, M. Forghani, A. Omani, A. Hanbury, F. Karimipour, in:, 2020 IEEE International Conference on Big Data, IEEE, 2021, pp. 3123–3132.
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| DOI
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| arXiv
G. Heiler, T. Reisch, J. Hurt, M. Forghani, A. Omani, A. Hanbury, F. Karimipour, in:, 2020 IEEE International Conference on Big Data, IEEE, 2021, pp. 3123–3132.
2021 | Journal Article | IST-REx-ID: 9254 |

Cell kinetics of auxin transport and activity in Arabidopsis root growth and skewing
Y. Hu, M. Omary, Y. Hu, O. Doron, L. Hörmayer, Q. Chen, O. Megides, O. Chekli, Z. Ding, J. Friml, Y. Zhao, I. Tsarfaty, E. Shani, Nature Communications 12 (2021).
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| PubMed | Europe PMC
Y. Hu, M. Omary, Y. Hu, O. Doron, L. Hörmayer, Q. Chen, O. Megides, O. Chekli, Z. Ding, J. Friml, Y. Zhao, I. Tsarfaty, E. Shani, Nature Communications 12 (2021).
2021 | Journal Article | IST-REx-ID: 9255 |

Semi-device-independent random number generation with flexible assumptions
M. Pivoluska, M. Plesch, M. Farkas, N. Ruzickova, C. Flegel, N.H. Valencia, W. Mccutcheon, M. Malik, E.A. Aguilar, Npj Quantum Information 7 (2021).
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| Files available
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M. Pivoluska, M. Plesch, M. Farkas, N. Ruzickova, C. Flegel, N.H. Valencia, W. Mccutcheon, M. Malik, E.A. Aguilar, Npj Quantum Information 7 (2021).
2021 | Journal Article | IST-REx-ID: 9257 |

Designing self-assembling kinetics with differentiable statistical physics models
C.P. Goodrich, E.M. King, S.S. Schoenholz, E.D. Cubuk, M.P. Brenner, Proceedings of the National Academy of Sciences 118 (2021).
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| PubMed | Europe PMC
C.P. Goodrich, E.M. King, S.S. Schoenholz, E.D. Cubuk, M.P. Brenner, Proceedings of the National Academy of Sciences 118 (2021).
2021 | Journal Article | IST-REx-ID: 9258 |

Pycro-Manager: Open-source software for customized and reproducible microscope control
Pinkard H, Stuurman N, Ivanov IE, Anthony NM, Ouyang W, Li B, Yang B, Tsuchida MA, Chhun B, Zhang G, Mei R, Anderson M, Shepherd DP, Hunt-Isaak I, Dunn RL, Jahr W, Kato S, Royer LA, Thiagarajah JR, Eliceiri KW, Lundberg E, Mehta SB, Waller L. 2021. Pycro-Manager: Open-source software for customized and reproducible microscope control. Nature Methods. 18(3), 226–228.
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| DOI
| Download Published Version (ext.)
| PubMed | Europe PMC
Pinkard H, Stuurman N, Ivanov IE, Anthony NM, Ouyang W, Li B, Yang B, Tsuchida MA, Chhun B, Zhang G, Mei R, Anderson M, Shepherd DP, Hunt-Isaak I, Dunn RL, Jahr W, Kato S, Royer LA, Thiagarajah JR, Eliceiri KW, Lundberg E, Mehta SB, Waller L. 2021. Pycro-Manager: Open-source software for customized and reproducible microscope control. Nature Methods. 18(3), 226–228.
2021 | Journal Article | IST-REx-ID: 9259 |

Shape and function of interstitial chemokine CCL21 gradients are independent of heparan sulfates produced by lymphatic endothelium
K. Vaahtomeri, C. Moussion, R. Hauschild, M.K. Sixt, Frontiers in Immunology 12 (2021).
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| DOI
| PubMed | Europe PMC
K. Vaahtomeri, C. Moussion, R. Hauschild, M.K. Sixt, Frontiers in Immunology 12 (2021).
2021 | Journal Article | IST-REx-ID: 9260 |

Arithmetic of higher-dimensional orbifolds and a mixed Waring problem
T.D. Browning, S. Yamagishi, Mathematische Zeitschrift 299 (2021) 1071–1101.
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T.D. Browning, S. Yamagishi, Mathematische Zeitschrift 299 (2021) 1071–1101.
2021 | Journal Article | IST-REx-ID: 9262 |

Optimal anchoring of a foldamer inhibitor of ASF1 histone chaperone through backbone plasticity
J. Mbianda, M.M. Bakail, C. André, G. Moal, M.E. Perrin, G. Pinna, R. Guerois, F. Becher, P. Legrand, S. Traoré, C. Douat, G. Guichard, F. Ochsenbein, Science Advances 7 (2021).
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| DOI
| PubMed | Europe PMC
J. Mbianda, M.M. Bakail, C. André, G. Moal, M.E. Perrin, G. Pinna, R. Guerois, F. Becher, P. Legrand, S. Traoré, C. Douat, G. Guichard, F. Ochsenbein, Science Advances 7 (2021).
2021 | Preprint | IST-REx-ID: 9281 |

Formal verification of Zagier's one-sentence proof
G. Dubach, F. Mühlböck, ArXiv (n.d.).
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| arXiv
G. Dubach, F. Mühlböck, ArXiv (n.d.).
2021 | Journal Article | IST-REx-ID: 9282 |

Complete mapping of magnetic anisotropy for prototype Ising van der Waals FePS3
M. Nauman, D.H. Kiem, S. Lee, S. Son, J.-G. Park, W. Kang, M.J. Han, Y.J. Jo, 2D Materials 8 (2021).
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| DOI
| Download Preprint (ext.)
| arXiv
M. Nauman, D.H. Kiem, S. Lee, S. Son, J.-G. Park, W. Kang, M.J. Han, Y.J. Jo, 2D Materials 8 (2021).
2021 | Journal Article | IST-REx-ID: 9283 |

Local genetic context shapes the function of a gene regulatory network
A.A. Nagy-Staron, K. Tomasek, C. Caruso Carter, E. Sonnleitner, B. Kavcic, T. Paixão, C.C. Guet, ELife 10 (2021).
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A.A. Nagy-Staron, K. Tomasek, C. Caruso Carter, E. Sonnleitner, B. Kavcic, T. Paixão, C.C. Guet, ELife 10 (2021).