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7266 Publications


2017 | Thesis | IST-REx-ID: 961 | OA
Barone, Vanessa. “Cell Adhesion and Cell Fate: An Effective Feedback Loop during Zebrafish Gastrulation.” IST Austria, 2017. https://doi.org/10.15479/AT:ISTA:th_825.
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2017 | Journal Article | IST-REx-ID: 1026
Agus, Viviana, and Harald L Janovjak. “Optogenetic Methods in Drug Screening: Technologies and Applications.” Current Opinion in Biotechnology. Elsevier, 2017. https://doi.org/10.1016/j.copbio.2017.02.006.
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2017 | Journal Article | IST-REx-ID: 1433 | OA
Bauer, Ulrich, Michael Kerber, Jan Reininghaus, and Hubert Wagner. “Phat - Persistent Homology Algorithms Toolbox.” Journal of Symbolic Computation. Academic Press, 2017. https://doi.org/10.1016/j.jsc.2016.03.008.
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2017 | Conference Paper | IST-REx-ID: 552 | OA
Chatterjee, Krishnendu, Monika Henzinger, and Alexander Svozil. “Faster Algorithms for Mean-Payoff Parity Games.” In Leibniz International Proceedings in Informatics, Vol. 83. Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2017. https://doi.org/10.4230/LIPIcs.MFCS.2017.39.
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2017 | Journal Article | IST-REx-ID: 1029 | OA
Lukacisin, Martin, Matthieu Landon, and Rishi Jajoo. “Sequence-Specific Thermodynamic Properties of Nucleic Acids Influence Both Transcriptional Pausing and Backtracking in Yeast.” PLoS One. Public Library of Science, 2017. https://doi.org/10.1371/journal.pone.0174066.
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2017 | Journal Article | IST-REx-ID: 664
Assen, Frank P, and Michael K Sixt. “The Dynamic Cytokine Niche.” Immunity. Cell Press, 2017. https://doi.org/10.1016/j.immuni.2017.04.006.
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2017 | Journal Article | IST-REx-ID: 682 | OA
Ukai, Hikari, Aiko Kawahara, Keiko Hirayama, Matthew J Case, Shotaro Aino, Masahiro Miyabe, Ken Wakita, et al. “PirB Regulates Asymmetries in Hippocampal Circuitry.” PLoS One. Public Library of Science, 2017. https://doi.org/10.1371/journal.pone.0179377.
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2017 | Journal Article | IST-REx-ID: 735
Barone, Vanessa, Moritz Lang, Gabriel Krens, Saurabh Pradhan, Shayan Shamipour, Keisuke Sako, Mateusz K Sikora, Calin C Guet, and Carl-Philipp J Heisenberg. “An Effective Feedback Loop between Cell-Cell Contact Duration and Morphogen Signaling Determines Cell Fate.” Developmental Cell. Cell Press, 2017. https://doi.org/10.1016/j.devcel.2017.09.014.
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2017 | Journal Article | IST-REx-ID: 1028 | OA
Kainrath, Stephanie, Manuela Stadler, Eva Gschaider-Reichhart, Martin Distel, and Harald L Janovjak. “Green-Light-Induced Inactivation of Receptor Signaling Using Cobalamin-Binding Domains.” Angewandte Chemie - International Edition. Wiley-Blackwell, 2017. https://doi.org/10.1002/anie.201611998.
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2017 | Journal Article | IST-REx-ID: 1024 | OA
Hurny, Andrej, and Eva Benková. “Methodological Advances in Auxin and Cytokinin Biology.” Auxins and Cytokinins in Plant Biology. Springer, 2017. https://doi.org/10.1007/978-1-4939-6831-2_1.
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2017 | Journal Article | IST-REx-ID: 676 | OA
Krens, Gabriel, Jim Veldhuis, Vanessa Barone, Daniel Capek, Jean-Léon Maître, Wayne Brodland, and Carl-Philipp J Heisenberg. “Interstitial Fluid Osmolarity Modulates the Action of Differential Tissue Surface Tension in Progenitor Cell Segregation during Gastrulation.” Development. Company of Biologists, 2017. https://doi.org/10.1242/dev.144964.
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2017 | Journal Article | IST-REx-ID: 661 | OA
Smutny, Michael, Zsuzsa Ákos, Silvia Grigolon, Shayan Shamipour, Verena Ruprecht, Daniel Capek, Martin Behrndt, et al. “Friction Forces Position the Neural Anlage.” Nature Cell Biology. Nature Publishing Group, 2017. https://doi.org/10.1038/ncb3492.
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2017 | Journal Article | IST-REx-ID: 704 | OA
Steinrück, Magdalena, and Calin C Guet. “Complex Chromosomal Neighborhood Effects Determine the Adaptive Potential of a Gene under Selection.” ELife. eLife Sciences Publications, 2017. https://doi.org/10.7554/eLife.25100.
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2017 | Journal Article | IST-REx-ID: 696 | OA
Lukacisinova, Marta, Sebastian Novak, and Tiago Paixao. “Stress Induced Mutagenesis: Stress Diversity Facilitates the Persistence of Mutator Genes.” PLoS Computational Biology. Public Library of Science, 2017. https://doi.org/10.1371/journal.pcbi.1005609.
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2017 | Journal Article | IST-REx-ID: 1027 | OA
Lukacisinova, Marta, and Mark Tobias Bollenbach. “Toward a Quantitative Understanding of Antibiotic Resistance Evolution.” Current Opinion in Biotechnology. Elsevier, 2017. https://doi.org/10.1016/j.copbio.2017.02.013.
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2017 | Conference Paper | IST-REx-ID: 949 | OA
Chatterjee, Krishnendu, Amir Kafshdar Goharshady, and Andreas Pavlogiannis. “JTDec: A Tool for Tree Decompositions in Soot.” edited by Deepak D’Souza, 10482:59–66. Springer, 2017. https://doi.org/10.1007/978-3-319-68167-2_4.
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2017 | Conference Paper | IST-REx-ID: 639 | OA
Chatterjee, Krishnendu, Hongfei Fu, and Amir Kafshdar Goharshady. “Non-Polynomial Worst Case Analysis of Recursive Programs.” edited by Rupak Majumdar and Viktor Kunčak, 10427:41–63. Springer, 2017. https://doi.org/10.1007/978-3-319-63390-9_3.
View | Files available | DOI | Download Submitted Version (ext.) | arXiv
 

2016 | Conference Paper | IST-REx-ID: 785
Haider, Syed, William Hasenplaugh, and Dan-Adrian Alistarh. “Lease/Release: Architectural Support for Scaling Contended Data Structures,” Vol. 12-16-March-2016. ACM, 2016. https://doi.org/10.1145/2851141.2851155.
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2016 | Journal Article | IST-REx-ID: 786 | OA
Alistarh, Dan-Adrian, Keren Censor Hillel, and Nir Shavit. “Are Lock Free Concurrent Algorithms Practically Wait Free .” Journal of the ACM. ACM, 2016. https://doi.org/10.1145/2903136.
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2016 | Journal Article | IST-REx-ID: 8020 | OA
Barron, H.C., Tim P Vogels, U.E. Emir, T.R. Makin, J. O’Shea, S. Clare, S. Jbabdi, R.J. Dolan, and T.E.J. Behrens. “Unmasking Latent Inhibitory Connections in Human Cortex to Reveal Dormant Cortical Memories.” Neuron. Elsevier, 2016. https://doi.org/10.1016/j.neuron.2016.02.031.
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2016 | Conference Paper | IST-REx-ID: 8094 | OA
Martius, Georg S, Rafael Hostettler, Alois Knoll, and Ralf Der. “Self-Organized Control of an Tendon Driven Arm by Differential Extrinsic Plasticity.” In Proceedings of the Artificial Life Conference 2016, 28:142–43. MIT Press, 2016. https://doi.org/10.7551/978-0-262-33936-0-ch029.
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2016 | Preprint | IST-REx-ID: 8128 | OA
Clopath, Claudia, Tim P Vogels, Robert C. Froemke, and Henning Sprekeler. “Receptive Field Formation by Interacting Excitatory and Inhibitory Synaptic Plasticity.” BioRxiv. Cold Spring Harbor Laboratory, 2016.
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2016 | Journal Article | IST-REx-ID: 813
Füzik, Tibor, Růžena Píchalová, Florian KM Schur, Karolína Strohalmová, Ivana Křížová, Romana Hadravová, Michaela Rumlová, John Briggs, Pavel Ulbrich, and Tomáš Ruml. “Nucleic Acid Binding by Mason-Pfizer Monkey Virus CA Promotes Virus Assembly and Genome Packaging.” Journal of Virology. ASM, 2016. https://doi.org/10.1128/JVI.03197-15.
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2016 | Journal Article | IST-REx-ID: 816
Schur, Florian KM, Martin Obr, Wim Hagen, William Wan, Arjen Jakobi, Joanna Kirkpatrick, Carsten Sachse, Hans Kraüsslich, and John Briggs. “An Atomic Model of HIV-1 Capsid-SP1 Reveals Structures Regulating Assembly and Maturation.” Science. American Association for the Advancement of Science, 2016. https://doi.org/10.1126/science.aaf9620.
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2016 | Journal Article | IST-REx-ID: 8241 | OA
Singer, Josef, Krisztina Manzano-Szalai, Judit Singer, Kathrin Thell, Anna Bentley-Lukschal, Caroline Stremnitzer, Franziska Roth-Walter, et al. “Proof of Concept Study with an HER-2 Mimotope Anticancer Vaccine Deduced from a Novel AAV-Mimotope Library Platform.” OncoImmunology. Taylor & Francis, 2016. https://doi.org/10.1080/2162402x.2016.1171446.
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2016 | Conference Paper | IST-REx-ID: 8300
Kokoris Kogias, Eleftherios, Orfefs Voutyras, and Theodora Varvarigou. “TRM-SIoT: A Scalable Hybrid Trust & Reputation Model for the Social Internet of Things.” In 2016 IEEE 21st International Conference on Emerging Technologies and Factory Automation. IEEE, 2016. https://doi.org/10.1109/etfa.2016.7733612.
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2016 | Conference Paper | IST-REx-ID: 8302 | OA
Kokoris Kogias, Eleftherios, Philipp Jovanovic, Nicolas Gailly, Ismail Khoffi, Linus Gasser, and Bryan Ford. “Enhancing Bitcoin Security and Performance with Strong Consistency via Collective Signing.” In Proceedings of the 25th USENIX Conference on Security Symposium, 279–296. USENIX Association, 2016.
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2016 | Journal Article | IST-REx-ID: 8452
Rodrigues, Christopher D. A., Xavier Henry, Emmanuelle Neumann, Vilius Kurauskas, Laure Bellard, Yann Fichou, Paul Schanda, Guy Schoehn, David Z. Rudner, and Cecile Morlot. “A Ring-Shaped Conduit Connects the Mother Cell and Forespore during Sporulation in Bacillus Subtilis.” Proceedings of the National Academy of Sciences. National Academy of Sciences, 2016. https://doi.org/10.1073/pnas.1609604113.
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2016 | Journal Article | IST-REx-ID: 8453
Kurauskas, Vilius, Emmanuelle Weber, Audrey Hessel, Isabel Ayala, Dominique Marion, and Paul Schanda. “Cross-Correlated Relaxation of Dipolar Coupling and Chemical-Shift Anisotropy in Magic-Angle Spinning R1ρ NMR Measurements: Application to Protein Backbone Dynamics Measurements.” The Journal of Physical Chemistry B. American Chemical Society, 2016. https://doi.org/10.1021/acs.jpcb.6b06129.
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2016 | Journal Article | IST-REx-ID: 8454
Schanda, Paul, and Matthias Ernst. “Studying Dynamics by Magic-Angle Spinning Solid-State NMR Spectroscopy: Principles and Applications to Biomolecules.” Progress in Nuclear Magnetic Resonance Spectroscopy. Elsevier, 2016. https://doi.org/10.1016/j.pnmrs.2016.02.001.
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2016 | Journal Article | IST-REx-ID: 8455
Kurauskas, Vilius, Elodie Crublet, Pavel Macek, Rime Kerfah, Diego F. Gauto, Jérôme Boisbouvier, and Paul Schanda. “Sensitive Proton-Detected Solid-State NMR Spectroscopy of Large Proteins with Selective CH3labelling: Application to the 50S Ribosome Subunit.” Chemical Communications. Royal Society of Chemistry, 2016. https://doi.org/10.1039/c6cc04484k.
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2016 | Journal Article | IST-REx-ID: 849
Saint Léger, Adélaïde, Carla Bello, Pablo Dans, Adrian Torres, Eva Novoa, Noelia Camacho, Modesto Orozco, Fyodor Kondrashov, and Lluís Ribas De Pouplana. “Saturation of Recognition Elements Blocks Evolution of New TRNA Identities.” Science Advances. American Association for the Advancement of Science, 2016. https://doi.org/10.1126/sciadv.1501860.
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2016 | Journal Article | IST-REx-ID: 8493
Guardia, M., Vadim Kaloshin, and J. Zhang. “A Second Order Expansion of the Separatrix Map for Trigonometric Perturbations of a Priori Unstable Systems.” Communications in Mathematical Physics. Springer Nature, 2016. https://doi.org/10.1007/s00220-016-2705-9.
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2016 | Journal Article | IST-REx-ID: 8494
Bernard, Patrick, Vadim Kaloshin, and Ke Zhang. “Arnold Diffusion in Arbitrary Degrees of Freedom and Normally Hyperbolic Invariant Cylinders.” Acta Mathematica. Institut Mittag-Leffler, 2016. https://doi.org/10.1007/s11511-016-0141-5.
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2016 | Journal Article | IST-REx-ID: 8496
Avila, Artur, Jacopo De Simoi, and Vadim Kaloshin. “An Integrable Deformation of an Ellipse of Small Eccentricity Is an Ellipse.” Annals of Mathematics. Princeton University Press, 2016. https://doi.org/10.4007/annals.2016.184.2.5.
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2016 | Journal Article | IST-REx-ID: 8497
Féjoz, Jacques, Marcel Guàrdia, Vadim Kaloshin, and Pablo Roldán. “Kirkwood Gaps and Diffusion along Mean Motion Resonances in the Restricted Planar Three-Body Problem.” Journal of the European Mathematical Society. European Mathematical Society Publishing House, 2016. https://doi.org/10.4171/jems/642.
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2016 | Journal Article | IST-REx-ID: 850
Sarkisyan K, Bolotin D, Meer M, Usmanova D, Mishin A, Sharonov G, Ivankov D, Bozhanova N, Baranov M, Soylemez O, Bogatyreva N, Vlasov P, Egorov E, Logacheva M, Kondrashov A, Chudakov D, Putintseva E, Mamedov I, Tawfik D, Lukyanov K, Kondrashov F. 2016. Local fitness landscape of the green fluorescent protein. Nature. 533, 397–401.
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2016 | Journal Article | IST-REx-ID: 853
Rivkina, Elizaveta, Lada Petrovskaya, Tatiana Vishnivetskaya, Kirill Krivushin, Lyubov Shmakova, Maria Tutukina, Arthur Meyers, and Fyodor Kondrashov. “Metagenomic Analyses of the Late Pleistocene Permafrost - Additional Tools for Reconstruction of Environmental Conditions.” Biogeosciences. European Geosciences Union, 2016. https://doi.org/10.5194/bg-13-2207-2016.
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2016 | Journal Article | IST-REx-ID: 460 | OA
Willmann, Katharina, Roberto Sacco, Rui Martins, Wojciech Garncarz, Ana Krolo, Sylvia Knapp, Keiryn Bennett, and Kaan Boztug. “Expanding the Interactome of the Noncanonical NF-ΚB Signaling Pathway.” Journal of Proteome Research. American Chemical Society, 2016. https://doi.org/10.1021/acs.jproteome.5b01004.
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2016 | Conference Paper | IST-REx-ID: 478 | OA
Chatterjee, Krishnendu, and Rasmus Ibsen-Jensen. “The Complexity of Deciding Legality of a Single Step of Magic: The Gathering,” 285:1432–39. IOS Press, 2016. https://doi.org/10.3233/978-1-61499-672-9-1432.
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2016 | Conference Paper | IST-REx-ID: 479
Jiang, Yu, Han Liu, Hui Kong, Rui Wang, Mohamad Hosseini, Jiaguang Sun, and Lui Sha. “Use Runtime Verification to Improve the Quality of Medical Care Practice.” In Proceedings of the 38th International Conference on Software Engineering Companion , 112–21. IEEE, 2016. https://doi.org/10.1145/2889160.2889233.
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2016 | Conference Paper | IST-REx-ID: 480 | OA
Chatterjee, Krishnendu, and Laurent Doyen. “Perfect-Information Stochastic Games with Generalized Mean-Payoff Objectives,” 05-08-July-2016:247–56. IEEE, 2016. https://doi.org/10.1145/2933575.2934513.
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2016 | Conference Paper | IST-REx-ID: 482
Rueda, Alfredo, Florian Sedlmeir, Michele Collodo, Ulrich Vogl, Birgit Stiller, Gerhard Schunk, Dmitry Strekalov, et al. “Nonlinear Single Sideband Microwave to Optical Conversion Using an Electro-Optic WGM-Resonator.” OSA, 2016. https://doi.org/10.1364/NP.2016.NTh3A.6.
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2016 | Journal Article | IST-REx-ID: 510 | OA
Liu, Zhijun, Nan Yang, Yanting Lv, Lixia Pan, Shuo Lv, Huibin Han, and Guodong Wang. “The CLE Gene Family in Populus Trichocarpa.” Plant Signaling & Behavior. Landes Bioscience, 2016. https://doi.org/10.1080/15592324.2016.1191734.
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2016 | Journal Article | IST-REx-ID: 526
Wangenheim, Daniel von, Jens Fangerau, Alexander Schmitz, Richard Smith, Heike Leitte, Ernst Stelzer, and Alexis Maizel. “Rules and Self-Organizing Properties of Post-Embryonic Plant Organ Cell Division Patterns.” Current Biology. Cell Press, 2016. https://doi.org/10.1016/j.cub.2015.12.047.
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2016 | Technical Report | IST-REx-ID: 5445 | OA
Chatterjee, Krishnendu, Andreas Pavlogiannis, and Yaron Velner. Quantitative Interprocedural Analysis. IST Austria, 2016. https://doi.org/10.15479/AT:IST-2016-523-v1-1.
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2016 | Technical Report | IST-REx-ID: 5446 | OA
Anonymous, 1, 2 Anonymous, and 3 Anonymous. Termination and Worst-Case Analysis of Recursive Programs. IST Austria, 2016.
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2016 | Technical Report | IST-REx-ID: 5447 | OA
Anonymous, 1, 2 Anonymous, and 3 Anonymous. Average-Case Analysis of Programs: Automated Recurrence Analysis for Almost-Linear Bounds. IST Austria, 2016.
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2016 | Technical Report | IST-REx-ID: 5448 | OA
Anonymous, 1, 2 Anonymous, 3 Anonymous, and 4 Anonymous. Data-Centric Dynamic Partial Order Reduction. IST Austria, 2016.
View | Files available | arXiv
 

2016 | Technical Report | IST-REx-ID: 5449 | OA
Pavlogiannis, Andreas, Josef Tkadlec, Krishnendu Chatterjee, and Martin Nowak. Amplification on Undirected Population Structures: Comets Beat Stars. IST Austria, 2016. https://doi.org/10.15479/AT:IST-2016-648-v1-1.
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