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6122 Publications
2015 | Journal Article | IST-REx-ID: 802
Characterization of an N-acetylglucosaminyltransferase involved in Aspergillus fumigatus zwitterionic glycoinositolphosphoceramide biosynthesis
J. Engel, P.S. Schmalhorst, A. Kruger, C. Muller, F. Buettner, F. Routier, Glycobiology 25 (2015) 1423–1430.
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| DOI
| PubMed | Europe PMC
J. Engel, P.S. Schmalhorst, A. Kruger, C. Muller, F. Buettner, F. Routier, Glycobiology 25 (2015) 1423–1430.
2015 | Journal Article | IST-REx-ID: 814
Structure of the immature HIV-1 capsid in intact virus particles at 8.8 Å resolution
F.K. Schur, W. Hagen, M. Rumlová, T. Ruml, B. Müller, H. Kraüsslich, J. Briggs, Nature 517 (2015) 505–508.
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| DOI
F.K. Schur, W. Hagen, M. Rumlová, T. Ruml, B. Müller, H. Kraüsslich, J. Briggs, Nature 517 (2015) 505–508.
2015 | Journal Article | IST-REx-ID: 815
The structure of immature virus like Rous sarcoma virus gag particles reveals a structural role for the p10 domain in assembly
F.K. Schur, R. Dick, W. Hagen, V. Vogt, J. Briggs, Journal of Virology 89 (2015) 10294–10302.
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| DOI
| PubMed | Europe PMC
F.K. Schur, R. Dick, W. Hagen, V. Vogt, J. Briggs, Journal of Virology 89 (2015) 10294–10302.
2015 | Conference Paper | IST-REx-ID: 1633 |

High-resolution brittle fracture simulation with boundary elements
D. Hahn, C.J. Wojtan, in:, ACM, 2015.
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D. Hahn, C.J. Wojtan, in:, ACM, 2015.
2015 | Journal Article | IST-REx-ID: 866
Massively parallel enzyme kinetics reveals the substrate recognition landscape of the metalloprotease ADAMTS13
C. Kretz, M. Dai, O. Soylemez, A. Yee, K. Desch, D. Siemieniak, K. Tomberg, F. Kondrashov, F. Meng, D. Ginsburg, PNAS 112 (2015) 9328–9333.
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| DOI
C. Kretz, M. Dai, O. Soylemez, A. Yee, K. Desch, D. Siemieniak, K. Tomberg, F. Kondrashov, F. Meng, D. Ginsburg, PNAS 112 (2015) 9328–9333.
2015 | Journal Article | IST-REx-ID: 886
Topological features of rugged fitness landscapes in sequence space
D. Kondrashov, F. Kondrashov, Trends in Genetics 31 (2015) 24–33.
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| DOI
D. Kondrashov, F. Kondrashov, Trends in Genetics 31 (2015) 24–33.
2015 | Journal Article | IST-REx-ID: 924
Dynamic model of heat and mass transfer in an unsaturated porous wick of capillary pumped loop
R. Boubaker, V. Platel, A. Bergès, M. Bancelin, E.B. Hannezo, Applied Thermal Engineering 76 (2015) 1–8.
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| DOI
R. Boubaker, V. Platel, A. Bergès, M. Bancelin, E.B. Hannezo, Applied Thermal Engineering 76 (2015) 1–8.
2015 | Journal Article | IST-REx-ID: 928 |

Assembly and positioning of actomyosin rings by contractility and planar cell polarity
I. Sehring, P. Recho, E. Denker, M. Kourakis, B. Mathiesen, E.B. Hannezo, B. Dong, D. Jiang, ELife 4 (2015).
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I. Sehring, P. Recho, E. Denker, M. Kourakis, B. Mathiesen, E.B. Hannezo, B. Dong, D. Jiang, ELife 4 (2015).
2015 | Journal Article | IST-REx-ID: 929
Cortical instability drives periodic supracellular actin pattern formation in epithelial tubes
E.B. Hannezo, B. Dong, P. Recho, J. Joanny, S. Hayashi, PNAS 112 (2015) 8620–8625.
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E.B. Hannezo, B. Dong, P. Recho, J. Joanny, S. Hayashi, PNAS 112 (2015) 8620–8625.
2015 | Journal Article | IST-REx-ID: 933 |

Physics of active jamming during collective cellular motion in a monolayer
S. García, E.B. Hannezo, J. Elgeti, J. Joanny, P. Silberzan, N. Gov, PNAS 112 (2015) 15314–15319.
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| PubMed | Europe PMC
S. García, E.B. Hannezo, J. Elgeti, J. Joanny, P. Silberzan, N. Gov, PNAS 112 (2015) 15314–15319.
2015 | Journal Article | IST-REx-ID: 906
Recent origin of the methacrylate redox system in Geobacter sulfurreducens AM-1 through horizontal gene transfer
O. Arkhipova, M. Meer, G. Mikoulinskaia, M. Zakharova, A. Galushko, V. Akimenko, F. Kondrashov, PLoS One 10 (2015).
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| DOI
O. Arkhipova, M. Meer, G. Mikoulinskaia, M. Zakharova, A. Galushko, V. Akimenko, F. Kondrashov, PLoS One 10 (2015).
2015 | Journal Article | IST-REx-ID: 1591 |

PIN-dependent auxin transport: Action, regulation, and evolution
M. Adamowski, J. Friml, Plant Cell 27 (2015) 20–32.
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| PubMed | Europe PMC
M. Adamowski, J. Friml, Plant Cell 27 (2015) 20–32.
2015 | Journal Article | IST-REx-ID: 9017
Structural insight into how the human helicase subunit MCM2 may act as a histone chaperone together with ASF1 at the replication fork
N. Richet, D. Liu, P. Legrand, C. Velours, A. Corpet, A. Gaubert, M.M. Bakail, G. Moal-Raisin, R. Guerois, C. Compper, A. Besle, B. Guichard, G. Almouzni, F. Ochsenbein, Nucleic Acids Research 43 (2015) 1905–1917.
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| DOI
| PubMed | Europe PMC
N. Richet, D. Liu, P. Legrand, C. Velours, A. Corpet, A. Gaubert, M.M. Bakail, G. Moal-Raisin, R. Guerois, C. Compper, A. Besle, B. Guichard, G. Almouzni, F. Ochsenbein, Nucleic Acids Research 43 (2015) 1905–1917.
2014 | Journal Article | IST-REx-ID: 1058
Coordinate-targeted and coordinate-stochastic super-resolution microscopy with the reversibly switchable fluorescent protein dreiklang
N. Jensen, J.G. Danzl, K. Willig, F. Lavoie Cardinal, T. Brakemann, S. Hell, S. Jakobs, ChemPhysChem 15 (2014) 756–762.
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N. Jensen, J.G. Danzl, K. Willig, F. Lavoie Cardinal, T. Brakemann, S. Hell, S. Jakobs, ChemPhysChem 15 (2014) 756–762.
2014 | Journal Article | IST-REx-ID: 118
Settling into dry granular media in different gravities
E. Altshuler, H. Torres, A. González_Pita, C.G. Sánchez, C. Pérez Penichet, S.R. Waitukaitis, R. Hidalgo, Geophysical Research Letters 41 (2014) 3032–3037.
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| DOI
E. Altshuler, H. Torres, A. González_Pita, C.G. Sánchez, C. Pérez Penichet, S.R. Waitukaitis, R. Hidalgo, Geophysical Research Letters 41 (2014) 3032–3037.
2014 | Journal Article | IST-REx-ID: 119 |

Size-dependent same-material tribocharging in insulating grains
S.R. Waitukaitis, V. Lee, J. Pierson, S. Forman, H. Jaeger, APS Physics, Physical Review Letters 112 (2014).
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S.R. Waitukaitis, V. Lee, J. Pierson, S. Forman, H. Jaeger, APS Physics, Physical Review Letters 112 (2014).
2014 | Journal Article | IST-REx-ID: 1309
Infinite speed of support propagation for the Derrida-Lebowitz-Speer-Spohn equation and quantum drift-diffusion models
J.L. Fischer, Nonlinear Differential Equations and Applications 21 (2014) 27–50.
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| DOI
J.L. Fischer, Nonlinear Differential Equations and Applications 21 (2014) 27–50.
2014 | Journal Article | IST-REx-ID: 1312
Upper bounds on waiting times for the Thin-film equation: The case of weak slippage
J.L. Fischer, Archive for Rational Mechanics and Analysis 211 (2014) 771–818.
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| DOI
J.L. Fischer, Archive for Rational Mechanics and Analysis 211 (2014) 771–818.
2014 | Journal Article | IST-REx-ID: 1375 |

Approximating the minimum cycle mean
K. Chatterjee, M. Henzinger, S. Krinninger, V. Loitzenbauer, M. Raskin, Theoretical Computer Science 547 (2014) 104–116.
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K. Chatterjee, M. Henzinger, S. Krinninger, V. Loitzenbauer, M. Raskin, Theoretical Computer Science 547 (2014) 104–116.
2014 | Conference Paper | IST-REx-ID: 1392 |

A logic-based framework for verifying consensus algorithms
C. Dragoi, T.A. Henzinger, H. Veith, J. Widder, D. Zufferey, in:, Springer, 2014, pp. 161–181.
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C. Dragoi, T.A. Henzinger, H. Veith, J. Widder, D. Zufferey, in:, Springer, 2014, pp. 161–181.
2014 | Conference Paper | IST-REx-ID: 1393 |

Probabilistic programming
A. Gordon, T.A. Henzinger, A. Nori, S. Rajamani, in:, Proceedings of the on Future of Software Engineering, ACM, 2014, pp. 167–181.
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A. Gordon, T.A. Henzinger, A. Nori, S. Rajamani, in:, Proceedings of the on Future of Software Engineering, ACM, 2014, pp. 167–181.
2014 | Thesis | IST-REx-ID: 1395
Immune defences in ants: Effects of social immunisation and a fungal ectosymbiont in the ant Lasius neglectus
M. Konrad, Immune Defences in Ants: Effects of Social Immunisation and a Fungal Ectosymbiont in the Ant Lasius Neglectus, IST Austria, 2014.
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M. Konrad, Immune Defences in Ants: Effects of Social Immunisation and a Fungal Ectosymbiont in the Ant Lasius Neglectus, IST Austria, 2014.
2014 | Thesis | IST-REx-ID: 1402
Molecular mechanisms of patterning and subcellular trafficking in Arabidopsis thaliana
P. Marhavá, Molecular Mechanisms of Patterning and Subcellular Trafficking in Arabidopsis Thaliana, IST Austria, 2014.
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P. Marhavá, Molecular Mechanisms of Patterning and Subcellular Trafficking in Arabidopsis Thaliana, IST Austria, 2014.
2014 | Thesis | IST-REx-ID: 1404
Evolution of a fungal pathogen towards individual versus social immunity in ants
M. Stock, Evolution of a Fungal Pathogen towards Individual versus Social Immunity in Ants, IST Austria, 2014.
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M. Stock, Evolution of a Fungal Pathogen towards Individual versus Social Immunity in Ants, IST Austria, 2014.
2014 | Conference Paper | IST-REx-ID: 1507 |

Random matrices, log-gases and Hölder regularity
L. Erdös, in:, Kyung Moon SA Co. Ltd., 2014, pp. 214–236.
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L. Erdös, in:, Kyung Moon SA Co. Ltd., 2014, pp. 214–236.
2014 | Conference Paper | IST-REx-ID: 1516 |

On the BCS gap equation for superfluid fermionic gases
G. Bräunlich, C. Hainzl, R. Seiringer, in:, Proceedings of the QMath12 Conference, World Scientific Publishing, 2014, pp. 127–137.
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| arXiv
G. Bräunlich, C. Hainzl, R. Seiringer, in:, Proceedings of the QMath12 Conference, World Scientific Publishing, 2014, pp. 127–137.
2014 | Journal Article | IST-REx-ID: 1532
Auxin-modulated root growth inhibition in Arabidopsis thaliana seedlings with ammonium as the sole nitrogen source
H. Yang, J. Von Der Fecht Bartenbach, J. Friml, J. Lohmann, B. Neuhäuser, U. Ludewig, Functional Plant Biology 42 (2014) 239–251.
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H. Yang, J. Von Der Fecht Bartenbach, J. Friml, J. Lohmann, B. Neuhäuser, U. Ludewig, Functional Plant Biology 42 (2014) 239–251.
2014 | Journal Article | IST-REx-ID: 1629 |

Edit propagation using geometric relationship functions
P. Guerrero, S. Jeschke, M. Wimmer, P. Wonka, ACM Transactions on Graphics 33 (2014).
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P. Guerrero, S. Jeschke, M. Wimmer, P. Wonka, ACM Transactions on Graphics 33 (2014).
2014 | Conference Paper | IST-REx-ID: 1643 |

Constrained Verifiable Random Functions
G. Fuchsbauer, in:, M. Abdalla, R. De Prisco (Eds.), SCN 2014, Springer, 2014, pp. 95–114.
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G. Fuchsbauer, in:, M. Abdalla, R. De Prisco (Eds.), SCN 2014, Springer, 2014, pp. 95–114.
2014 | Conference Paper | IST-REx-ID: 1702 |

Generalised interpolation by solving recursion free-horn clauses
A. Gupta, C. Popeea, A. Rybalchenko, in:, Electronic Proceedings in Theoretical Computer Science, EPTCS, Open Publishing, 2014, pp. 31–38.
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A. Gupta, C. Popeea, A. Rybalchenko, in:, Electronic Proceedings in Theoretical Computer Science, EPTCS, Open Publishing, 2014, pp. 31–38.
2014 | Conference Paper | IST-REx-ID: 1708
Spatio-temporal representations of uncertainty in spiking neural networks
C. Savin, S. Denève, in:, Neural Information Processing Systems, 2014, pp. 2024–2032.
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C. Savin, S. Denève, in:, Neural Information Processing Systems, 2014, pp. 2024–2032.
2014 | Journal Article | IST-REx-ID: 1761 |

PtSi clustering in silicon probed by transport spectroscopy
M. Mongillo, P. Spathis, G. Katsaros, S. De Franceschi, P. Gentile, R. Rurali, X. Cartoixà, Physical Review X 3 (2014).
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M. Mongillo, P. Spathis, G. Katsaros, S. De Franceschi, P. Gentile, R. Rurali, X. Cartoixà, Physical Review X 3 (2014).
2014 | Journal Article | IST-REx-ID: 1791
Off-target effect of doublecortin family shRNA on neuronal migration associated with endogenous MicroRNA dysregulation
S. Baek, G. Kerjan, S. Bielas, J. Lee, A. Fenstermaker, G. Novarino, J. Gleeson, Neuron 82 (2014) 1255–1262.
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S. Baek, G. Kerjan, S. Bielas, J. Lee, A. Fenstermaker, G. Novarino, J. Gleeson, Neuron 82 (2014) 1255–1262.
2014 | Book Chapter | IST-REx-ID: 1806
Auxin on the road navigated by cellular PIN polarity
P. Baster, J. Friml, in:, E. Zažímalová, J. Petrášek, E. Benková (Eds.), Auxin and Its Role in Plant Development, Springer, 2014, pp. 143–170.
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| DOI
P. Baster, J. Friml, in:, E. Zažímalová, J. Petrášek, E. Benková (Eds.), Auxin and Its Role in Plant Development, Springer, 2014, pp. 143–170.
2014 | Journal Article | IST-REx-ID: 1816 |

Topology-preserving watermarking of vector graphics
S. Huber, M. Held, P. Meerwald, R. Kwitt, International Journal of Computational Geometry and Applications 24 (2014) 61–86.
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S. Huber, M. Held, P. Meerwald, R. Kwitt, International Journal of Computational Geometry and Applications 24 (2014) 61–86.
2014 | Journal Article | IST-REx-ID: 1821 |

Bose gases, Bose-Einstein condensation, and the Bogoliubov approximation
R. Seiringer, Journal of Mathematical Physics 55 (2014).
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R. Seiringer, Journal of Mathematical Physics 55 (2014).
2014 | Journal Article | IST-REx-ID: 1822
Introduction
V. Jakšić, C. Pillet, R. Seiringer, Journal of Mathematical Physics 55 (2014).
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V. Jakšić, C. Pillet, R. Seiringer, Journal of Mathematical Physics 55 (2014).
2014 | Book Chapter | IST-REx-ID: 1829
Movement templates for learning of hitting and batting
K. Muelling, O. Kroemer, C. Lampert, B. Schölkopf, in:, J. Kober, J. Peters (Eds.), Learning Motor Skills, Springer, 2014, pp. 69–82.
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K. Muelling, O. Kroemer, C. Lampert, B. Schölkopf, in:, J. Kober, J. Peters (Eds.), Learning Motor Skills, Springer, 2014, pp. 69–82.
2014 | Journal Article | IST-REx-ID: 1844 |

Mutational studies on resurrected ancestral proteins reveal conservation of site-specific amino acid preferences throughout evolutionary history
V. Risso, F. Manssour Triedo, A. Delgado Delgado, R. Arco, A. Barroso Deljesús, Á. Inglés Prieto, R. Godoy Ruiz, J. Gavira, E. Gaucher, B. Ibarra Molero, J. Sánchez Ruiz, Molecular Biology and Evolution 32 (2014) 440–455.
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V. Risso, F. Manssour Triedo, A. Delgado Delgado, R. Arco, A. Barroso Deljesús, Á. Inglés Prieto, R. Godoy Ruiz, J. Gavira, E. Gaucher, B. Ibarra Molero, J. Sánchez Ruiz, Molecular Biology and Evolution 32 (2014) 440–455.
2014 | Journal Article | IST-REx-ID: 1852 |

An auxin-mediated shift toward growth isotropy promotes organ formation at the shoot meristem in Arabidopsis
M. Sassi, O. Ali, F. Boudon, G. Cloarec, U. Abad, C. Cellier, X. Chen, B. Gilles, P. Milani, J. Friml, T. Vernoux, C. Godin, O. Hamant, J. Traas, Current Biology 24 (2014) 2335–2342.
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M. Sassi, O. Ali, F. Boudon, G. Cloarec, U. Abad, C. Cellier, X. Chen, B. Gilles, P. Milani, J. Friml, T. Vernoux, C. Godin, O. Hamant, J. Traas, Current Biology 24 (2014) 2335–2342.
2014 | Conference Paper | IST-REx-ID: 1853
Game theoretic secure localization in wireless sensor networks
S. Jha, S. Tripakis, S. Seshia, K. Chatterjee, in:, IEEE, 2014, pp. 85–90.
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S. Jha, S. Tripakis, S. Seshia, K. Chatterjee, in:, IEEE, 2014, pp. 85–90.
2014 | Journal Article | IST-REx-ID: 1854 |

Partial shape matching using transformation parameter similarity
P. Guerrero, T. Auzinger, M. Wimmer, S. Jeschke, Computer Graphics Forum 34 (2014) 239–252.
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P. Guerrero, T. Auzinger, M. Wimmer, S. Jeschke, Computer Graphics Forum 34 (2014) 239–252.
2014 | Journal Article | IST-REx-ID: 1842 |

On the geometric ramsey number of outerplanar graphs
J. Cibulka, P. Gao, M. Krcál, T. Valla, P. Valtr, Discrete & Computational Geometry 53 (2014) 64–79.
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J. Cibulka, P. Gao, M. Krcál, T. Valla, P. Valtr, Discrete & Computational Geometry 53 (2014) 64–79.
2014 | Journal Article | IST-REx-ID: 1862 |

Inhibition of cell expansion by rapid ABP1-mediated auxin effect on microtubules
X. Chen, L. Grandont, H. Li, R. Hauschild, S. Paque, A. Abuzeineh, H. Rakusová, E. Benková, C. Perrot Rechenmann, J. Friml, Nature 516 (2014) 90–93.
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X. Chen, L. Grandont, H. Li, R. Hauschild, S. Paque, A. Abuzeineh, H. Rakusová, E. Benková, C. Perrot Rechenmann, J. Friml, Nature 516 (2014) 90–93.
2014 | Conference Paper | IST-REx-ID: 1869
Suraq - a controller synthesis tool using uninterpreted functions
G. Hofferek, A. Gupta, in:, E. Yahav (Ed.), HVC 2014, Springer, 2014, pp. 68–74.
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G. Hofferek, A. Gupta, in:, E. Yahav (Ed.), HVC 2014, Springer, 2014, pp. 68–74.
2014 | Conference Paper | IST-REx-ID: 1870 |

Lipschitz robustness of finite-state transducers
T.A. Henzinger, J. Otop, R. Samanta, in:, Leibniz International Proceedings in Informatics, LIPIcs, Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2014, pp. 431–443.
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T.A. Henzinger, J. Otop, R. Samanta, in:, Leibniz International Proceedings in Informatics, LIPIcs, Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2014, pp. 431–443.
2014 | Conference Paper | IST-REx-ID: 1872 |

Extensional crisis and proving identity
A. Gupta, L. Kovács, B. Kragl, A. Voronkov, in:, F. Cassez, J.-F. Raskin (Eds.), ATVA 2014, Springer, 2014, pp. 185–200.
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A. Gupta, L. Kovács, B. Kragl, A. Voronkov, in:, F. Cassez, J.-F. Raskin (Eds.), ATVA 2014, Springer, 2014, pp. 185–200.
2014 | Conference Paper | IST-REx-ID: 1875 |

Cost-aware automatic program repair
R. Samanta, O. Olivo, E. Allen, in:, M. Müller-Olm, H. Seidl (Eds.), Springer, 2014, pp. 268–284.
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R. Samanta, O. Olivo, E. Allen, in:, M. Müller-Olm, H. Seidl (Eds.), Springer, 2014, pp. 268–284.
2014 | Journal Article | IST-REx-ID: 1876 |

Functionals on triangulations of delaunay sets
N. Dolbilin, H. Edelsbrunner, A. Glazyrin, O. Musin, Moscow Mathematical Journal 14 (2014) 491–504.
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N. Dolbilin, H. Edelsbrunner, A. Glazyrin, O. Musin, Moscow Mathematical Journal 14 (2014) 491–504.
2014 | Journal Article | IST-REx-ID: 1877
Physiology: Relax and come in
M.K. Sixt, K. Vaahtomeri, Nature 514 (2014) 441–442.
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| DOI
M.K. Sixt, K. Vaahtomeri, Nature 514 (2014) 441–442.