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6425 Publications
2016 | Thesis | IST-REx-ID: 1125 | 
Evolutionary proccesses in variable emvironments
S. Novak, Evolutionary Proccesses in Variable Emvironments, IST Austria, 2016.
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S. Novak, Evolutionary Proccesses in Variable Emvironments, IST Austria, 2016.
2016 | Research Data | IST-REx-ID: 5554 |
Experimental Data for Binding Site Evolution of Bacterial RNA Polymerase
M. Tugrul, (2016).
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M. Tugrul, (2016).
2016 | Thesis | IST-REx-ID: 1124 |
Optical functionalization of human class A orphan G-protein coupled receptors
M. Morri, Optical Functionalization of Human Class A Orphan G-Protein Coupled Receptors, IST Austria, 2016.
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M. Morri, Optical Functionalization of Human Class A Orphan G-Protein Coupled Receptors, IST Austria, 2016.
2016 | Journal Article | IST-REx-ID: 9456 |
Mechanism for DNA transposons to generate introns on genomic scales
J.T. Huff, D. ZILBERMAN, S.W. Roy, Nature 538 (2016) 533–536.
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J.T. Huff, D. ZILBERMAN, S.W. Roy, Nature 538 (2016) 533–536.
2016 | Journal Article | IST-REx-ID: 9477 |
DNA demethylation is initiated in the central cells of Arabidopsis and rice
K. Park, M.Y. Kim, M. Vickers, J.-S. Park, Y. Hyun, T. Okamoto, D. ZILBERMAN, R.L. Fischer, X. Feng, Y. Choi, S. Scholten, Proceedings of the National Academy of Sciences 113 (2016) 15138–15143.
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K. Park, M.Y. Kim, M. Vickers, J.-S. Park, Y. Hyun, T. Okamoto, D. ZILBERMAN, R.L. Fischer, X. Feng, Y. Choi, S. Scholten, Proceedings of the National Academy of Sciences 113 (2016) 15138–15143.
2016 | Journal Article | IST-REx-ID: 9474 |
Arabidopsis male sexual lineage exhibits more robust maintenance of CG methylation than somatic tissues
P.-H. Hsieh, S. He, T. Buttress, H. Gao, M. Couchman, R.L. Fischer, D. ZILBERMAN, X. Feng, Proceedings of the National Academy of Sciences 113 (2016) 15132–15137.
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P.-H. Hsieh, S. He, T. Buttress, H. Gao, M. Couchman, R.L. Fischer, D. ZILBERMAN, X. Feng, Proceedings of the National Academy of Sciences 113 (2016) 15132–15137.
2016 | Journal Article | IST-REx-ID: 9473 |
Arabidopsis male sexual lineage exhibits more robust maintenance of CG methylation than somatic tissues
P.-H. Hsieh, S. He, T. Buttress, H. Gao, M. Couchman, R.L. Fischer, D. ZILBERMAN, X. Feng, Proceedings of the National Academy of Sciences 113 (2016) 15132–15137.
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P.-H. Hsieh, S. He, T. Buttress, H. Gao, M. Couchman, R.L. Fischer, D. ZILBERMAN, X. Feng, Proceedings of the National Academy of Sciences 113 (2016) 15132–15137.
2016 | Journal Article | IST-REx-ID: 9591 |
Cycles and matchings in randomly perturbed digraphs and hypergraphs
M. Krivelevich, M.A. Kwan, B. Sudakov, Combinatorics, Probability and Computing 25 (2016) 909–927.
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M. Krivelevich, M.A. Kwan, B. Sudakov, Combinatorics, Probability and Computing 25 (2016) 909–927.
2016 | Journal Article | IST-REx-ID: 1183 |
Impaired amino acid transport at the blood brain barrier is a cause of autism spectrum disorder
Tarlungeanu D-C, Deliu E, Dotter C, Kara M, Janiesch P, Scalise M, Galluccio M, Tesulov M, Morelli E, Sönmez F, Bilgüvar K, Ohgaki R, Kanai Y, Johansen A, Esharif S, Ben Omran T, Topcu M, Schlessinger A, Indiveri C, Duncan K, Caglayan A, Günel M, Gleeson J, Novarino G. 2016. Impaired amino acid transport at the blood brain barrier is a cause of autism spectrum disorder. Cell. 167(6), 1481–1494.
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Tarlungeanu D-C, Deliu E, Dotter C, Kara M, Janiesch P, Scalise M, Galluccio M, Tesulov M, Morelli E, Sönmez F, Bilgüvar K, Ohgaki R, Kanai Y, Johansen A, Esharif S, Ben Omran T, Topcu M, Schlessinger A, Indiveri C, Duncan K, Caglayan A, Günel M, Gleeson J, Novarino G. 2016. Impaired amino acid transport at the blood brain barrier is a cause of autism spectrum disorder. Cell. 167(6), 1481–1494.
2016 | Journal Article | IST-REx-ID: 1321 |
Diversified actin protrusions promote environmental exploration but are dispensable for locomotion of leukocytes
A.F. Leithner, A. Eichner, J. Müller, A. REVERSAT, M. Brown, J. Schwarz, J. Merrin, D. De Gorter, F.K. Schur, J. Bayerl, I. de Vries, S. Wieser, R. Hauschild, F. Lai, M. Moser, D. Kerjaschki, K. Rottner, V. Small, T. Stradal, M.K. Sixt, Nature Cell Biology 18 (2016) 1253–1259.
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A.F. Leithner, A. Eichner, J. Müller, A. REVERSAT, M. Brown, J. Schwarz, J. Merrin, D. De Gorter, F.K. Schur, J. Bayerl, I. de Vries, S. Wieser, R. Hauschild, F. Lai, M. Moser, D. Kerjaschki, K. Rottner, V. Small, T. Stradal, M.K. Sixt, Nature Cell Biology 18 (2016) 1253–1259.
2016 | Journal Article | IST-REx-ID: 1100 |
Optogenetic control of nodal signaling reveals a temporal pattern of nodal signaling regulating cell fate specification during gastrulation
K. Sako, S. Pradhan, V. Barone, Á. Inglés Prieto, P. Mueller, V. Ruprecht, D. Capek, S. Galande, H.L. Janovjak, C.-P.J. Heisenberg, Cell Reports 16 (2016) 866–877.
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K. Sako, S. Pradhan, V. Barone, Á. Inglés Prieto, P. Mueller, V. Ruprecht, D. Capek, S. Galande, H.L. Janovjak, C.-P.J. Heisenberg, Cell Reports 16 (2016) 866–877.
2016 | Conference Paper | IST-REx-ID: 1437 |
Algorithms for algebraic path properties in concurrent systems of constant treewidth components
K. Chatterjee, A.K. Goharshady, R. Ibsen-Jensen, A. Pavlogiannis, in:, ACM, 2016, pp. 733–747.
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K. Chatterjee, A.K. Goharshady, R. Ibsen-Jensen, A. Pavlogiannis, in:, ACM, 2016, pp. 733–747.
2016 | Conference Paper | IST-REx-ID: 1386 |
Termination analysis of probabilistic programs through Positivstellensatz's
K. Chatterjee, H. Fu, A.K. Goharshady, in:, Springer, 2016, pp. 3–22.
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K. Chatterjee, H. Fu, A.K. Goharshady, in:, Springer, 2016, pp. 3–22.
2015 | Journal Article | IST-REx-ID: 2271 |
The power of linear programming for general-valued CSPs
V. Kolmogorov, J. Thapper, S. Živný, SIAM Journal on Computing 44 (2015) 1–36.
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V. Kolmogorov, J. Thapper, S. Živný, SIAM Journal on Computing 44 (2015) 1–36.
2015 | Journal Article | IST-REx-ID: 256 |
Improvements in Birch's theorem on forms in many variables
T.D. Browning, S. Prendiville, Journal Fur Die Reine Und Angewandte Mathematik 2017 (2015).
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T.D. Browning, S. Prendiville, Journal Fur Die Reine Und Angewandte Mathematik 2017 (2015).
2015 | Journal Article | IST-REx-ID: 257 |
Pairs of diagonal quadratic forms and linear correlations among sums of two squares
T.D. Browning, R. Munshi, Forum Mathematicum 27 (2015) 2025–2050.
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T.D. Browning, R. Munshi, Forum Mathematicum 27 (2015) 2025–2050.
2015 | Book Chapter | IST-REx-ID: 258
A survey of applications of the circle method to rational points
T.D. Browning, in:, Arithmetic and Geometry, Cambridge University Press, 2015, pp. 89–113.
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T.D. Browning, in:, Arithmetic and Geometry, Cambridge University Press, 2015, pp. 89–113.
2015 | Journal Article | IST-REx-ID: 259
Rational points on cubic hypersurfaces over F_q(t)
T.D. Browning, P. Vishe, Geometric and Functional Analysis 25 (2015) 671–732.
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T.D. Browning, P. Vishe, Geometric and Functional Analysis 25 (2015) 671–732.
2015 | Journal Article | IST-REx-ID: 260
Erratum Rational points on intersections of cubic and quadric hypersurfaces
T.D. Browning, R. Dietmann, R. Heath Brown, Journal of the Institute of Mathematics of Jussieu 14 (2015).
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T.D. Browning, R. Dietmann, R. Heath Brown, Journal of the Institute of Mathematics of Jussieu 14 (2015).
2015 | Journal Article | IST-REx-ID: 802
Characterization of an N-acetylglucosaminyltransferase involved in Aspergillus fumigatus zwitterionic glycoinositolphosphoceramide biosynthesis
J. Engel, P.S. Schmalhorst, A. Kruger, C. Muller, F. Buettner, F. Routier, Glycobiology 25 (2015) 1423–1430.
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J. Engel, P.S. Schmalhorst, A. Kruger, C. Muller, F. Buettner, F. Routier, Glycobiology 25 (2015) 1423–1430.
2015 | Journal Article | IST-REx-ID: 814
Structure of the immature HIV-1 capsid in intact virus particles at 8.8 Å resolution
F.K. Schur, W. Hagen, M. Rumlová, T. Ruml, B. Müller, H. Kraüsslich, J. Briggs, Nature 517 (2015) 505–508.
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F.K. Schur, W. Hagen, M. Rumlová, T. Ruml, B. Müller, H. Kraüsslich, J. Briggs, Nature 517 (2015) 505–508.
2015 | Journal Article | IST-REx-ID: 815
The structure of immature virus like Rous sarcoma virus gag particles reveals a structural role for the p10 domain in assembly
F.K. Schur, R. Dick, W. Hagen, V. Vogt, J. Briggs, Journal of Virology 89 (2015) 10294–10302.
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F.K. Schur, R. Dick, W. Hagen, V. Vogt, J. Briggs, Journal of Virology 89 (2015) 10294–10302.
2015 | Journal Article | IST-REx-ID: 8242
Generation of recombinant FcεRIα of dog, cat and horse for component-resolved allergy diagnosis in veterinary patients
L. Einhorn, J. Singer, M. Muhr, A. Schoos, K. Oida, J. Singer, L. Panakova, K. Manzano-Szalai, E. Jensen-Jarolim, Journal of Allergy and Clinical Immunology 135 (2015).
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L. Einhorn, J. Singer, M. Muhr, A. Schoos, K. Oida, J. Singer, L. Panakova, K. Manzano-Szalai, E. Jensen-Jarolim, Journal of Allergy and Clinical Immunology 135 (2015).
2015 | Journal Article | IST-REx-ID: 832
Real time analysis of lateral root organogenesis in arabidopsis
P. Marhavý, E. Benková, Bio-Protocol 5 (2015).
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P. Marhavý, E. Benková, Bio-Protocol 5 (2015).
2015 | Journal Article | IST-REx-ID: 8456
Observing the overall rocking motion of a protein in a crystal
P. Ma, Y. Xue, N. Coquelle, J.D. Haller, T. Yuwen, I. Ayala, O. Mikhailovskii, D. Willbold, J.-P. Colletier, N.R. Skrynnikov, P. Schanda, Nature Communications 6 (2015).
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P. Ma, Y. Xue, N. Coquelle, J.D. Haller, T. Yuwen, I. Ayala, O. Mikhailovskii, D. Willbold, J.-P. Colletier, N.R. Skrynnikov, P. Schanda, Nature Communications 6 (2015).
2015 | Journal Article | IST-REx-ID: 8457
Conformational exchange processes in biological systems: Detection by solid-state NMR
P. Ma, P. Schanda, EMagRes 4 (2015) 699–708.
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P. Ma, P. Schanda, EMagRes 4 (2015) 699–708.
2015 | Journal Article | IST-REx-ID: 848
A model of substitution trajectories in sequence space and long-term protein evolution
D. Usmanova, L. Ferretti, I. Povolotskaya, P. Vlasov, F. Kondrashov, Molecular Biology and Evolution 32 (2015) 542–554.
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D. Usmanova, L. Ferretti, I. Povolotskaya, P. Vlasov, F. Kondrashov, Molecular Biology and Evolution 32 (2015) 542–554.
2015 | Journal Article | IST-REx-ID: 8495
A note on micro-instability for Hamiltonian systems close to integrable
A. Bounemoura, V. Kaloshin, Proceedings of the American Mathematical Society 144 (2015) 1553–1560.
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A. Bounemoura, V. Kaloshin, Proceedings of the American Mathematical Society 144 (2015) 1553–1560.
2015 | Journal Article | IST-REx-ID: 8498
Arnold diffusion for smooth convex systems of two and a half degrees of freedom
V. Kaloshin, K. Zhang, Nonlinearity 28 (2015) 2699–2720.
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V. Kaloshin, K. Zhang, Nonlinearity 28 (2015) 2699–2720.
2015 | Journal Article | IST-REx-ID: 8499
Growth of Sobolev norms in the cubic defocusing nonlinear Schrödinger equation
M. Guardia, V. Kaloshin, Journal of the European Mathematical Society 17 (2015) 71–149.
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M. Guardia, V. Kaloshin, Journal of the European Mathematical Society 17 (2015) 71–149.
2015 | Journal Article | IST-REx-ID: 866
Massively parallel enzyme kinetics reveals the substrate recognition landscape of the metalloprotease ADAMTS13
C. Kretz, M. Dai, O. Soylemez, A. Yee, K. Desch, D. Siemieniak, K. Tomberg, F. Kondrashov, F. Meng, D. Ginsburg, PNAS 112 (2015) 9328–9333.
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C. Kretz, M. Dai, O. Soylemez, A. Yee, K. Desch, D. Siemieniak, K. Tomberg, F. Kondrashov, F. Meng, D. Ginsburg, PNAS 112 (2015) 9328–9333.
2015 | Journal Article | IST-REx-ID: 1686
Fragmented communication between immune cells: Neutrophils blaze a trail with migratory cues for T cells to follow to sites of infection
E. Kiermaier, M.K. Sixt, Science 349 (2015) 1055–1056.
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E. Kiermaier, M.K. Sixt, Science 349 (2015) 1055–1056.
2015 | Journal Article | IST-REx-ID: 1687 |
Navigating in tissue mazes: Chemoattractant interpretation in complex environments
M. Sarris, M.K. Sixt, Current Opinion in Cell Biology 36 (2015) 93–102.
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M. Sarris, M.K. Sixt, Current Opinion in Cell Biology 36 (2015) 93–102.
2015 | Journal Article | IST-REx-ID: 1688 |
Bounds for Pach's selection theorem and for the minimum solid angle in a simplex
R. Karasev, J. Kynčl, P. Paták, Z. Patakova, M. Tancer, Discrete & Computational Geometry 54 (2015) 610–636.
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R. Karasev, J. Kynčl, P. Paták, Z. Patakova, M. Tancer, Discrete & Computational Geometry 54 (2015) 610–636.
2015 | Conference Paper | IST-REx-ID: 1689 |
Temporal logic control for stochastic linear systems using abstraction refinement of probabilistic games
M. Svoreňová, J. Kretinsky, M. Chmelik, K. Chatterjee, I. Cěrná, C. Belta, in:, Proceedings of the 18th International Conference on Hybrid Systems: Computation and Control, ACM, 2015, pp. 259–268.
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M. Svoreňová, J. Kretinsky, M. Chmelik, K. Chatterjee, I. Cěrná, C. Belta, in:, Proceedings of the 18th International Conference on Hybrid Systems: Computation and Control, ACM, 2015, pp. 259–268.
2015 | Conference Paper | IST-REx-ID: 1690
HYST: A source transformation and translation tool for hybrid automaton models
S. Bak, S. Bogomolov, T. Johnson, in:, Springer, 2015, pp. 128–133.
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S. Bak, S. Bogomolov, T. Johnson, in:, Springer, 2015, pp. 128–133.
2015 | Conference Paper | IST-REx-ID: 1691
Temporal logic motion planning using POMDPs with parity objectives: Case study paper
M. Svoreňová, M. Chmelik, K. Leahy, H. Eniser, K. Chatterjee, I. Cěrná, C. Belta, in:, Proceedings of the 18th International Conference on Hybrid Systems: Computation and Control, ACM, 2015, pp. 233–238.
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M. Svoreňová, M. Chmelik, K. Leahy, H. Eniser, K. Chatterjee, I. Cěrná, C. Belta, in:, Proceedings of the 18th International Conference on Hybrid Systems: Computation and Control, ACM, 2015, pp. 233–238.
2015 | Conference Paper | IST-REx-ID: 1692
Eliminating spurious transitions in reachability with support functions
G. Frehse, S. Bogomolov, M. Greitschus, T. Strump, A. Podelski, in:, Proceedings of the 18th International Conference on Hybrid Systems: Computation and Control, ACM, 2015, pp. 149–158.
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G. Frehse, S. Bogomolov, M. Greitschus, T. Strump, A. Podelski, in:, Proceedings of the 18th International Conference on Hybrid Systems: Computation and Control, ACM, 2015, pp. 149–158.
2015 | Journal Article | IST-REx-ID: 1693 |
Quantum interference effects in laser spectroscopy of muonic hydrogen, deuterium, and helium-3
P. Amaro, B. Franke, J. Krauth, M. Diepold, F. Fratini, L. Safari, J. Machado, A. Antognini, F. Kottmann, P. Indelicato, R. Pohl, J. Santos, Physical Review A 92 (2015).
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P. Amaro, B. Franke, J. Krauth, M. Diepold, F. Fratini, L. Safari, J. Machado, A. Antognini, F. Kottmann, P. Indelicato, R. Pohl, J. Santos, Physical Review A 92 (2015).
2015 | Journal Article | IST-REx-ID: 1694
Quantitative temporal simulation and refinement distances for timed systems
K. Chatterjee, V. Prabhu, IEEE Transactions on Automatic Control 60 (2015) 2291–2306.
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K. Chatterjee, V. Prabhu, IEEE Transactions on Automatic Control 60 (2015) 2291–2306.
2015 | Journal Article | IST-REx-ID: 1695 |
Evaluation techniques for Gutzwiller wave functions in finite dimensions
J. Kaczmarczyk, T. Schickling, J. Bünemann, Physica Status Solidi (B): Basic Solid State Physics 252 (2015) 2059–2071.
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J. Kaczmarczyk, T. Schickling, J. Bünemann, Physica Status Solidi (B): Basic Solid State Physics 252 (2015) 2059–2071.
2015 | Journal Article | IST-REx-ID: 1696 |
Gutzwiller wave function solution for Anderson lattice model: Emerging universal regimes of heavy quasiparticle states
M. Wysokiński, J. Kaczmarczyk, J. Spałek, Physical Review B 92 (2015).
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M. Wysokiński, J. Kaczmarczyk, J. Spałek, Physical Review B 92 (2015).
2015 | Journal Article | IST-REx-ID: 1697 |
High accuracy decoding of dynamical motion from a large retinal population
O. Marre, V. Botella Soler, K. Simmons, T. Mora, G. Tkačik, M. Berry, PLoS Computational Biology 11 (2015).
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O. Marre, V. Botella Soler, K. Simmons, T. Mora, G. Tkačik, M. Berry, PLoS Computational Biology 11 (2015).
2015 | Journal Article | IST-REx-ID: 1698 |
The complexity of multi-mean-payoff and multi-energy games
Y. Velner, K. Chatterjee, L. Doyen, T.A. Henzinger, A. Rabinovich, J. Raskin, Information and Computation 241 (2015) 177–196.
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Y. Velner, K. Chatterjee, L. Doyen, T.A. Henzinger, A. Rabinovich, J. Raskin, Information and Computation 241 (2015) 177–196.
2015 | Journal Article | IST-REx-ID: 1699 |
Adaptive gene introgression after secondary contact
H. Uecker, D. Setter, J. Hermisson, Journal of Mathematical Biology 70 (2015) 1523–1580.
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H. Uecker, D. Setter, J. Hermisson, Journal of Mathematical Biology 70 (2015) 1523–1580.
2015 | Journal Article | IST-REx-ID: 1700 |
Ultralong-range order in the Fermi-Hubbard model with long-range interactions
E. Van Loon, M. Katsnelson, M. Lemeshko, Physical Review B 92 (2015).
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E. Van Loon, M. Katsnelson, M. Lemeshko, Physical Review B 92 (2015).
2015 | Journal Article | IST-REx-ID: 1701 |
Thermodynamics and signatures of criticality in a network of neurons
G. Tkačik, T. Mora, O. Marre, D. Amodei, S. Palmer, M. Berry Ii, W. Bialek, PNAS 112 (2015) 11508–11513.
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G. Tkačik, T. Mora, O. Marre, D. Amodei, S. Palmer, M. Berry Ii, W. Bialek, PNAS 112 (2015) 11508–11513.
2015 | Journal Article | IST-REx-ID: 1703
An evaluation of the genetic structure of seed sources and the maintenance of genetic diversity during establishment of two yellow box (Eucalyptus melliodora) seed-production areas
L. Broadhurst, G. Fifield, B. Vanzella, M. Pickup, Australian Journal of Botany 63 (2015) 455–466.
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L. Broadhurst, G. Fifield, B. Vanzella, M. Pickup, Australian Journal of Botany 63 (2015) 455–466.
2015 | Journal Article | IST-REx-ID: 1704 |
Note on a family of monotone quantum relative entropies
A. Deuchert, C. Hainzl, R. Seiringer, Letters in Mathematical Physics 105 (2015) 1449–1466.
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A. Deuchert, C. Hainzl, R. Seiringer, Letters in Mathematical Physics 105 (2015) 1449–1466.
2015 | Conference Paper | IST-REx-ID: 1706 |
Multi-task and lifelong learning of kernels
A. Pentina, S. Ben David, in:, Springer, 2015, pp. 194–208.
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A. Pentina, S. Ben David, in:, Springer, 2015, pp. 194–208.