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6702 Publications


2017 | Research Data Reference | IST-REx-ID: 9844
Nikolic, N., Schreiber, F., Dal Co, A., Kiviet, D., Bergmiller, T., Littmann, S., … Ackermann, M. (2017). Source data for figures and tables. Public Library of Science. https://doi.org/10.1371/journal.pgen.1007122.s018
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2017 | Journal Article | IST-REx-ID: 1077 | OA
Fernandes Redondo, R. A., de Vladar, H., Włodarski, T., & Bollback, J. P. (2017). Evolutionary interplay between structure, energy and epistasis in the coat protein of the ϕX174 phage family. Journal of the Royal Society Interface. Royal Society of London. https://doi.org/10.1098/rsif.2016.0139
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2017 | Journal Article | IST-REx-ID: 561
Pleska, M., & Guet, C. C. (2017). Effects of mutations in phage restriction sites during escape from restriction–modification. Biology Letters. The Royal Society. https://doi.org/10.1098/rsbl.2017.0646
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2017 | Research Data Reference | IST-REx-ID: 9847
Pleska, M., & Guet, C. C. (2017). Supplementary materials and methods; Full data set from effects of mutations in phage restriction sites during escape from restriction–modification. The Royal Society. https://doi.org/10.6084/m9.figshare.5633917.v1
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2017 | Journal Article | IST-REx-ID: 9445 | OA
Lyons, D. B., & ZILBERMAN, D. (2017). DDM1 and Lsh remodelers allow methylation of DNA wrapped in nucleosomes. ELife. eLife Sciences Publications. https://doi.org/10.7554/elife.30674
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2017 | Journal Article | IST-REx-ID: 9506 | OA
ZILBERMAN, D. (2017). An evolutionary case for functional gene body methylation in plants and animals. Genome Biology. Springer Nature. https://doi.org/10.1186/s13059-017-1230-2
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2017 | Journal Article | IST-REx-ID: 798 | OA
Barzanjeh, S., Wulf, M., Peruzzo, M., Kalaee, M., Dieterle, P., Painter, O., & Fink, J. M. (2017). Mechanical on chip microwave circulator. Nature Communications. Nature Publishing Group. https://doi.org/10.1038/s41467-017-01304-x
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2017 | Technical Report | IST-REx-ID: 5455 | OA
Chatterjee, K., Choudhary, B., & Pavlogiannis, A. (2017). Optimal Dyck reachability for data-dependence and alias analysis. IST Austria. https://doi.org/10.15479/AT:IST-2017-870-v1-1
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2017 | Conference Paper | IST-REx-ID: 949 | OA
Chatterjee, K., Goharshady, A. K., & Pavlogiannis, A. (2017). JTDec: A tool for tree decompositions in soot. In D. D’Souza (Ed.) (Vol. 10482, pp. 59–66). Presented at the ATVA: Automated Technology for Verification and Analysis, Pune, India: Springer. https://doi.org/10.1007/978-3-319-68167-2_4
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2017 | Conference Paper | IST-REx-ID: 639 | OA
Chatterjee, K., Fu, H., & Goharshady, A. K. (2017). Non-polynomial worst case analysis of recursive programs. In R. Majumdar & V. Kunčak (Eds.) (Vol. 10427, pp. 41–63). Presented at the CAV: Computer Aided Verification, Heidelberg, Germany: Springer. https://doi.org/10.1007/978-3-319-63390-9_3
View | Files available | DOI | Download Submitted Version (ext.) | arXiv
 

2017 | Journal Article | IST-REx-ID: 960 | OA
Hansen, A. H., Düllberg, C. F., Mieck, C., Loose, M., & Hippenmeyer, S. (2017). Cell polarity in cerebral cortex development - cellular architecture shaped by biochemical networks. Frontiers in Cellular Neuroscience. Frontiers Research Foundation. https://doi.org/10.3389/fncel.2017.00176
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2017 | Conference Paper | IST-REx-ID: 647 | OA
Bogomolov, S., Giacobbe, M., Henzinger, T. A., & Kong, H. (2017). Conic abstractions for hybrid systems (Vol. 10419, pp. 116–132). Presented at the FORMATS: Formal Modelling and Analysis of Timed Systems, Berlin, Germany: Springer. https://doi.org/10.1007/978-3-319-65765-3_7
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2017 | Conference Paper | IST-REx-ID: 631 | OA
Bogomolov, S., Frehse, G., Giacobbe, M., & Henzinger, T. A. (2017). Counterexample guided refinement of template polyhedra (Vol. 10205, pp. 589–606). Presented at the TACAS: Tools and Algorithms for the Construction and Analysis of Systems, Uppsala, Sweden: Springer. https://doi.org/10.1007/978-3-662-54577-5_34
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2017 | Journal Article | IST-REx-ID: 1029 | OA
Lukacisin, M., Landon, M., & Jajoo, R. (2017). Sequence-specific thermodynamic properties of nucleic acids influence both transcriptional pausing and backtracking in yeast. PLoS One. Public Library of Science. https://doi.org/10.1371/journal.pone.0174066
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2017 | Journal Article | IST-REx-ID: 664
Assen, F. P., & Sixt, M. K. (2017). The dynamic cytokine niche. Immunity. Cell Press. https://doi.org/10.1016/j.immuni.2017.04.006
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2017 | Journal Article | IST-REx-ID: 696 | OA
Lukacisinova, M., Novak, S., & Paixao, T. (2017). Stress induced mutagenesis: Stress diversity facilitates the persistence of mutator genes. PLoS Computational Biology. Public Library of Science. https://doi.org/10.1371/journal.pcbi.1005609
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2017 | Journal Article | IST-REx-ID: 1027 | OA
Lukacisinova, M., & Bollenbach, M. T. (2017). Toward a quantitative understanding of antibiotic resistance evolution. Current Opinion in Biotechnology. Elsevier. https://doi.org/10.1016/j.copbio.2017.02.013
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2017 | Journal Article | IST-REx-ID: 682 | OA
Ukai, H., Kawahara, A., Hirayama, K., Case, M. J., Aino, S., Miyabe, M., … Ito, I. (2017). PirB regulates asymmetries in hippocampal circuitry. PLoS One. Public Library of Science. https://doi.org/10.1371/journal.pone.0179377
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2017 | Journal Article | IST-REx-ID: 735
Barone, V., Lang, M., Krens, G., Pradhan, S., Shamipour, S., Sako, K., … Heisenberg, C.-P. J. (2017). An effective feedback loop between cell-cell contact duration and morphogen signaling determines cell fate. Developmental Cell. Cell Press. https://doi.org/10.1016/j.devcel.2017.09.014
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2017 | Journal Article | IST-REx-ID: 1024 | OA
Hurny, A., & Benková, E. (2017). Methodological advances in auxin and cytokinin biology. Auxins and Cytokinins in Plant Biology. Springer. https://doi.org/10.1007/978-1-4939-6831-2_1
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2017 | Journal Article | IST-REx-ID: 704 | OA
Steinrück, M., & Guet, C. C. (2017). Complex chromosomal neighborhood effects determine the adaptive potential of a gene under selection. ELife. eLife Sciences Publications. https://doi.org/10.7554/eLife.25100
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2017 | Journal Article | IST-REx-ID: 676 | OA
Krens, G., Veldhuis, J., Barone, V., Capek, D., Maître, J.-L., Brodland, W., & Heisenberg, C.-P. J. (2017). Interstitial fluid osmolarity modulates the action of differential tissue surface tension in progenitor cell segregation during gastrulation. Development. Company of Biologists. https://doi.org/10.1242/dev.144964
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2017 | Journal Article | IST-REx-ID: 661 | OA
Smutny, M., Ákos, Z., Grigolon, S., Shamipour, S., Ruprecht, V., Capek, D., … Heisenberg, C.-P. J. (2017). Friction forces position the neural anlage. Nature Cell Biology. Nature Publishing Group. https://doi.org/10.1038/ncb3492
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2017 | Conference Paper | IST-REx-ID: 637 | OA
Jafargholi, Z., Kamath Hosdurg, C., Klein, K., Komargodski, I., Pietrzak, K. Z., & Wichs, D. (2017). Be adaptive avoid overcommitting. In J. Katz & H. Shacham (Eds.) (Vol. 10401, pp. 133–163). Presented at the CRYPTO: Cryptology, Santa Barbara, CA, United States: Springer. https://doi.org/10.1007/978-3-319-63688-7_5
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2016 | Journal Article | IST-REx-ID: 261
Browning, T. D., & Vinogradov, I. (2016). Effective ratner theorem for SL (2, R) ⋉R2 and gaps in √n modulo 1. Journal of the London Mathematical Society. John Wiley and Sons Ltd. https://doi.org/10.1112/jlms/jdw025
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2016 | Journal Article | IST-REx-ID: 262 | OA
Browning, T. D., & Newton, R. (2016). The proportion of failures of the Hasse norm principle. Mathematika. Cambridge University Press. https://doi.org/10.1112/S0025579315000261
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2016 | Journal Article | IST-REx-ID: 263 | OA
De La Bretèche, R., Browning, T. D., & Salberger, P. (2016). Counting rational points on the Cayley ruled cubic. European Journal of Mathematics. Springer Nature. https://doi.org/10.1007/s40879-015-0049-1
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2016 | Journal Article | IST-REx-ID: 264 | OA
Bright, M., Browning, T. D., & Loughran, D. (2016). Failures of weak approximation in families. Compositio Mathematica. Cambridge University Press. https://doi.org/10.1112/S0010437X16007405
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2016 | Journal Article | IST-REx-ID: 8020 | OA
Barron, H. C., Vogels, T. P., Emir, U. E., Makin, T. R., O’Shea, J., Clare, S., … Behrens, T. E. J. (2016). Unmasking latent inhibitory connections in human cortex to reveal dormant cortical memories. Neuron. Elsevier. https://doi.org/10.1016/j.neuron.2016.02.031
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2016 | Conference Paper | IST-REx-ID: 8094 | OA
Martius, G. S., Hostettler, R., Knoll, A., & Der, R. (2016). Self-organized control of an tendon driven arm by differential extrinsic plasticity. In Proceedings of the Artificial Life Conference 2016 (Vol. 28, pp. 142–143). Cancun, Mexico: MIT Press. https://doi.org/10.7551/978-0-262-33936-0-ch029
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2016 | Preprint | IST-REx-ID: 8128 | OA
Clopath, C., Vogels, T. P., Froemke, R. C., & Sprekeler, H. (2016). Receptive field formation by interacting excitatory and inhibitory synaptic plasticity. bioRxiv. Cold Spring Harbor Laboratory.
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2016 | Journal Article | IST-REx-ID: 813
Füzik, T., Píchalová, R., Schur, F. K., Strohalmová, K., Křížová, I., Hadravová, R., … Ruml, T. (2016). Nucleic acid binding by Mason-Pfizer monkey virus CA promotes virus assembly and genome packaging. Journal of Virology. ASM. https://doi.org/10.1128/JVI.03197-15
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2016 | Journal Article | IST-REx-ID: 816
Schur, F. K., Obr, M., Hagen, W., Wan, W., Jakobi, A., Kirkpatrick, J., … Briggs, J. (2016). An atomic model of HIV-1 capsid-SP1 reveals structures regulating assembly and maturation. Science. American Association for the Advancement of Science. https://doi.org/10.1126/science.aaf9620
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2016 | Journal Article | IST-REx-ID: 8241 | OA
Singer, J., Manzano-Szalai, K., Singer, J., Thell, K., Bentley-Lukschal, A., Stremnitzer, C., … Jensen-Jarolim, E. (2016). Proof of concept study with an HER-2 mimotope anticancer vaccine deduced from a novel AAV-mimotope library platform. OncoImmunology. Taylor & Francis. https://doi.org/10.1080/2162402x.2016.1171446
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2016 | Conference Paper | IST-REx-ID: 8300
Kokoris Kogias, E., Voutyras, O., & Varvarigou, T. (2016). TRM-SIoT: A scalable hybrid trust & reputation model for the social Internet of Things. In 2016 IEEE 21st International Conference on Emerging Technologies and Factory Automation. Berlin, Germany: IEEE. https://doi.org/10.1109/etfa.2016.7733612
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2016 | Conference Paper | IST-REx-ID: 8302 | OA
Kokoris Kogias, E., Jovanovic, P., Gailly, N., Khoffi, I., Gasser, L., & Ford, B. (2016). Enhancing bitcoin security and performance with strong consistency via collective signing. In Proceedings of the 25th USENIX Conference on Security Symposium (pp. 279–296). Austin, TX, United States: USENIX Association.
View | Download Published Version (ext.) | arXiv
 

2016 | Journal Article | IST-REx-ID: 8452
Rodrigues, C. D. A., Henry, X., Neumann, E., Kurauskas, V., Bellard, L., Fichou, Y., … Morlot, C. (2016). A ring-shaped conduit connects the mother cell and forespore during sporulation in Bacillus subtilis. Proceedings of the National Academy of Sciences. National Academy of Sciences. https://doi.org/10.1073/pnas.1609604113
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2016 | Journal Article | IST-REx-ID: 8453
Kurauskas, V., Weber, E., Hessel, A., Ayala, I., Marion, D., & Schanda, P. (2016). Cross-correlated relaxation of dipolar coupling and chemical-shift anisotropy in magic-angle spinning R1ρ NMR measurements: Application to protein backbone dynamics measurements. The Journal of Physical Chemistry B. American Chemical Society. https://doi.org/10.1021/acs.jpcb.6b06129
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2016 | Journal Article | IST-REx-ID: 8454
Schanda, P., & Ernst, M. (2016). Studying dynamics by magic-angle spinning solid-state NMR spectroscopy: Principles and applications to biomolecules. Progress in Nuclear Magnetic Resonance Spectroscopy. Elsevier. https://doi.org/10.1016/j.pnmrs.2016.02.001
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2016 | Journal Article | IST-REx-ID: 8455
Kurauskas, V., Crublet, E., Macek, P., Kerfah, R., Gauto, D. F., Boisbouvier, J., & Schanda, P. (2016). Sensitive proton-detected solid-state NMR spectroscopy of large proteins with selective CH3labelling: Application to the 50S ribosome subunit. Chemical Communications. Royal Society of Chemistry. https://doi.org/10.1039/c6cc04484k
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2016 | Journal Article | IST-REx-ID: 849
Saint Léger, A., Bello, C., Dans, P., Torres, A., Novoa, E., Camacho, N., … Ribas De Pouplana, L. (2016). Saturation of recognition elements blocks evolution of new tRNA identities. Science Advances. American Association for the Advancement of Science. https://doi.org/10.1126/sciadv.1501860
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2016 | Journal Article | IST-REx-ID: 8493
Guardia, M., Kaloshin, V., & Zhang, J. (2016). A second order expansion of the separatrix map for trigonometric perturbations of a priori unstable systems. Communications in Mathematical Physics. Springer Nature. https://doi.org/10.1007/s00220-016-2705-9
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2016 | Journal Article | IST-REx-ID: 8494
Bernard, P., Kaloshin, V., & Zhang, K. (2016). Arnold diffusion in arbitrary degrees of freedom and normally hyperbolic invariant cylinders. Acta Mathematica. Institut Mittag-Leffler. https://doi.org/10.1007/s11511-016-0141-5
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2016 | Journal Article | IST-REx-ID: 8496
Avila, A., De Simoi, J., & Kaloshin, V. (2016). An integrable deformation of an ellipse of small eccentricity is an ellipse. Annals of Mathematics. Princeton University Press. https://doi.org/10.4007/annals.2016.184.2.5
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2016 | Journal Article | IST-REx-ID: 8497
Féjoz, J., Guàrdia, M., Kaloshin, V., & Roldán, P. (2016). Kirkwood gaps and diffusion along mean motion resonances in the restricted planar three-body problem. Journal of the European Mathematical Society. European Mathematical Society Publishing House. https://doi.org/10.4171/jems/642
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2016 | Journal Article | IST-REx-ID: 850
Sarkisyan K, Bolotin D, Meer M, Usmanova D, Mishin A, Sharonov G, Ivankov D, Bozhanova N, Baranov M, Soylemez O, Bogatyreva N, Vlasov P, Egorov E, Logacheva M, Kondrashov A, Chudakov D, Putintseva E, Mamedov I, Tawfik D, Lukyanov K, Kondrashov F. 2016. Local fitness landscape of the green fluorescent protein. Nature. 533, 397–401.
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2016 | Journal Article | IST-REx-ID: 853
Rivkina, E., Petrovskaya, L., Vishnivetskaya, T., Krivushin, K., Shmakova, L., Tutukina, M., … Kondrashov, F. (2016). Metagenomic analyses of the late Pleistocene permafrost - Additional tools for reconstruction of environmental conditions. Biogeosciences. European Geosciences Union. https://doi.org/10.5194/bg-13-2207-2016
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2016 | Journal Article | IST-REx-ID: 1705 | OA
Bogomolov, S., Donzé, A., Frehse, G., Grosu, R., Johnson, T., Ladan, H., … Wehrle, M. (2016). Guided search for hybrid systems based on coarse-grained space abstractions. International Journal on Software Tools for Technology Transfer. Springer. https://doi.org/10.1007/s10009-015-0393-y
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2016 | Conference Paper | IST-REx-ID: 1707
Pielorz, J., & Lampert, C. (2016). Optimal geospatial allocation of volunteers for crisis management. Presented at the ICT-DM: Information and Communication Technologies for Disaster Management, Rennes, France: IEEE. https://doi.org/10.1109/ICT-DM.2015.7402041
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2016 | Journal Article | IST-REx-ID: 173 | OA
Browning, T. D., & Booker, A. (2016). Square-free values of reducible polynomials. Discrete Analysis. https://doi.org/10.19086/da.732
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