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5163 Publications


2013 | Journal Article | IST-REx-ID: 2412   OA
Probabilistic models for CRISPR spacer content evolution
A. Kupczok, J.P. Bollback, BMC Evolutionary Biology 13 (2013) 54–54.
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2013 | Journal Article | IST-REx-ID: 2690
Evaluation of glutamate concentration transient in the synaptic cleft of the rat calyx of Held
T. Budisantoso, H. Harada, N. Kamasawa, Y. Fukazawa, R. Shigemoto, K. Matsui, Journal of Physiology 591 (2013) 219–239.
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2013 | Journal Article | IST-REx-ID: 2823
Post-fire recovery of revegetated woodland communities in south-eastern Australia
M. Pickup, S. Wilson, D. Freudenberger, N. Nicholls, L. Gould, S. Hnatiuk, J. Delandre, Austral Ecology 38 (2013) 300–312.
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2013 | Journal Article | IST-REx-ID: 2828   OA
The complexity of conservative valued CSPs
V. Kolmogorov, S. Živný, Journal of the ACM 60 (2013).
View | DOI | Download (ext.) | arXiv
 

2013 | Journal Article | IST-REx-ID: 2830
A conduit to amplify innate immunity
C. Moussion, M.K. Sixt, Immunity 38 (2013) 853–854.
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2013 | Journal Article | IST-REx-ID: 2835   OA
Root ultraviolet b-sensitive1/weak auxin response3 is essential for polar auxin transport in arabidopsis
H. Yu, M. Karampelias, S. Robert, W. Peer, R. Swarup, S. Ye, L. Ge, J. Cohen, A. Murphy, J. Friml, M. Estelle, Plant Physiology 162 (2013) 965–976.
View | DOI | Download (ext.) | PubMed | Europe PMC
 

2013 | Journal Article | IST-REx-ID: 2842   OA
Inference in two dimensions: Allele frequencies versus lengths of shared sequence blocks
N.H. Barton, A. Etheridge, J. Kelleher, A. Véber, Theoretical Population Biology 87 (2013) 105–119.
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2013 | Journal Article | IST-REx-ID: 2816   OA
Evolutionary dynamics of cancer in response to targeted combination therapy
I. Božić, J. Reiter, B. Allen, T. Antal, K. Chatterjee, P. Shah, Y. Moon, A. Yaqubie, N. Kelly, D. Le, E. Lipson, P. Chapman, L. Diaz, B. Vogelstein, M. Nowak, ELife 2 (2013).
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2013 | Journal Article | IST-REx-ID: 2811   OA
Nature of laminar-turbulence intermittency in shear flows
M. Avila, B. Hof, Physical Review E 87 (2013).
View | DOI | Download (ext.) | arXiv
 

2013 | Journal Article | IST-REx-ID: 2861
Lyapunov exponent and topological entropy plateaus in piecewise linear maps
V. Botella Soler, J. Oteo, J. Ros, P. Glendinning, Journal of Physics A: Mathematical and Theoretical 46 (2013) 125101.
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2013 | Journal Article | IST-REx-ID: 2880   OA
Auxin reflux between the endodermis and pericycle promotes lateral root initiation
P. Marhavy, M. Vanstraelen, B. De Rybel, D. Zhaojun, M. Bennett, T. Beeckman, E. Benková, EMBO Journal 32 (2013) 149–158.
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2013 | Conference (Editor) | IST-REx-ID: 2885
Mathematical and Engineering Methods in Computer Science
A. Kucera, T.A. Henzinger, J. Nesetril, T. Vojnar, D. Antos, eds., Mathematical and Engineering Methods in Computer Science, Springer, 2013.
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2013 | Journal Article | IST-REx-ID: 2900
Networking networks
R. Azevedo, R. Lohaus, T. Paixao, Evolution & Development 10 (2013) 514–515.
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2013 | Conference Paper | IST-REx-ID: 2948   OA
Beyond dataset bias: Multi-task unaligned shared knowledge transfer
T. Tommasi, N. Quadrianto, B. Caputo, C. Lampert, 7724 (2013) 1–15.
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2013 | Journal Article | IST-REx-ID: 2854   OA
Strategy improvement for concurrent reachability and turn based stochastic safety games
K. Chatterjee, L. De Alfaro, T.A. Henzinger, Journal of Computer and System Sciences 79 (2013) 640–657.
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2013 | Encyclopedia Article | IST-REx-ID: 3321
Kernel based learning
N. Quadrianto, C. Lampert, in:, W. Dubitzky, O. Wolkenhauer, K. Cho, H. Yokota (Eds.), Encyclopedia of Systems Biology, Springer, 2013, pp. 1069–1069.
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2013 | Journal Article | IST-REx-ID: 352
Organic ligand displacement by metal salts to enhance nanoparticle functionality: Thermoelectric properties of Ag inf 2 inf Te
D. Cadavid, M. Ibanez, A. Shavel, O. Durá, M. López De La Torre, A. Cabot, Journal of Materials Chemistry A 1 (2013) 4864–4870.
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2013 | Journal Article | IST-REx-ID: 376
Cu2HgSnSe4 nanoparticles: synthesis and thermoelectric properties
W. Li, M. Ibáñez, R. Zamani, N. García Castelló, G. Stéphane, D. Cadavid, J. Prades, J. Arbiol, A. Cabot, CrystEngComm 44 (2013) 8966–8971.
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2013 | Journal Article | IST-REx-ID: 509   OA
The clathrin adaptor complex AP-2 mediates endocytosis of brassinosteroid INSENSITIVE1 in arabidopsis
S. Di Rubbo, N. Irani, S. Kim, Z. Xu, A. Gadeyne, W. Dejonghe, I. Vanhoutte, G. Persiau, D. Eeckhout, S. Simon, K. Song, J. Kleine Vehn, J. Friml, G. De Jaeger, D. Van Damme, I. Hwang, E. Russinova, Plant Cell 25 (2013) 2986–2997.
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2013 | Journal Article | IST-REx-ID: 516   OA
A map of cell type‐specific auxin responses
B. Bargmann, S. Vanneste, G. Krouk, T. Nawy, I. Efroni, E. Shani, G. Choe, J. Friml, D. Bergmann, M. Estelle, K. Birnbaum, Molecular Systems Biology 9 (2013).
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2013 | Journal Article | IST-REx-ID: 511   OA
Regulation of auxin homeostasis and gradients in Arabidopsis roots through the formation of the indole-3-acetic acid catabolite 2-oxindole-3-acetic acid
A. Pěnčík, B. Simonovik, S. Petersson, E. Henyková, S. Simon, K. Greenham, Y. Zhang, M. Kowalczyk, M. Estelle, E. Zažímalová, O. Novák, G. Sandberg, K. Ljung, Plant Cell 25 (2013) 3858–3870.
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2013 | Journal Article | IST-REx-ID: 528
Local auxin sources orient the apical basal axis in arabidopsis embryos
H. Robert, P. Grones, A. Stepanova, L. Robles, A. Lokerse, J. Alonso, D. Weijers, J. Friml, Current Biology 23 (2013) 2506–2512.
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2013 | Technical Report | IST-REx-ID: 5404   OA
The complexity of ergodic games
K. Chatterjee, R. Ibsen-Jensen, The Complexity of Ergodic Games, IST Austria, 2013.
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2013 | Technical Report | IST-REx-ID: 5409   OA
Edit distance for timed automata
K. Chatterjee, R. Ibsen-Jensen, R. Majumdar, Edit Distance for Timed Automata, IST Austria, 2013.
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2013 | Journal Article | IST-REx-ID: 6128   OA
Cross-modulation of homeostatic responses to temperature, oxygen and carbon dioxide in C. elegans
E. Kodama-Namba, L.A. Fenk, A.J. Bretscher, E. Gross, K.E. Busch, M. de Bono, PLoS Genetics 9 (2013) e1004011.
View | Files available | DOI | PubMed | Europe PMC
 

2013 | Journal Article | IST-REx-ID: 6130   OA
Efficient genome editing in Caenorhabditis elegans by CRISPR-targeted homologous recombination
C. Chen, L.A. Fenk, M. de Bono, Nucleic Acids Research 41 (2013) e193.
View | Files available | DOI | PubMed | Europe PMC
 

2013 | Journal Article | IST-REx-ID: 6135
Worms under stress: C. elegans stress response and its relevance to complex human disease and aging
M. Rodriguez, L.B. Snoek, M. de Bono, J.E. Kammenga, Trends in Genetics 29 (2013) 367–374.
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2013 | Journal Article | IST-REx-ID: 6370
Molecular origins of the high-performance nonlinear optical susceptibility in a phenolic polyene chromophore: Electron density distributions, hydrogen bonding, and ab initio calculations
T.-C. Lin, J.M. Cole, A.P. Higginbotham, A.J. Edwards, R.O. Piltz, J. Pérez-Moreno, J.-Y. Seo, S.-C. Lee, K. Clays, O.-P. Kwon, The Journal of Physical Chemistry C 117 (2013) 9416–9430.
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2013 | Journal Article | IST-REx-ID: 972   OA
Observation of dirac node formation and mass acquisition in a topological crystalline insulator
Y. Okada, M. Serbyn, H. Lin, D. Walkup, W. Zhou, C. Dhital, M. Neupane, S. Xu, Y. Wang, R. Sankar, F. Chou, A. Bansil, M. Hasan, S. Wilson, L. Fu, V. Madhavan, Science 341 (2013) 1496–1499.
View | DOI | Download (ext.) | arXiv
 

2013 | Technical Report | IST-REx-ID: 6440   OA
Replacing competition with cooperation to achieve scalable lock-free FIFO queues
T.A. Henzinger, H. Payer, A. Sezgin, Replacing Competition with Cooperation to Achieve Scalable Lock-Free FIFO Queues , IST Austria, 2013.
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2013 | Conference Paper | IST-REx-ID: 2847
Structural Counter Abstraction
K. Bansal, E. Koskinen, T. Wies, D. Zufferey, 7795 (2013) 62–77.
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2013 | Journal Article | IST-REx-ID: 2859   OA
Homology and robustness of level and interlevel sets
P. Bendich, H. Edelsbrunner, D. Morozov, A. Patel, Homology, Homotopy and Applications 15 (2013) 51–72.
View | DOI | Download (ext.) | arXiv
 

2013 | Journal Article | IST-REx-ID: 2443
Defining the selectivity of processes along the auxin response chain: A study using auxin analogues
S. Simon, M. Kubeš, P. Baster, S. Robert, P. Dobrev, J. Friml, J. Petrášek, E. Zažímalová, New Phytologist 200 (2013) 1034–1048.
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2013 | Conference Paper | IST-REx-ID: 2260   OA
Efficient signatures of knowledge and DAA in the standard model
D. Bernhard, G. Fuchsbauer, E. Ghadafi, 7954 (2013) 518–533.
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2013 | Conference Paper | IST-REx-ID: 2258   OA
Digital signatures with minimal overhead from indifferentiable random invertible functions
E. Kiltz, K.Z. Pietrzak, M. Szegedy, 8042 (2013) 571–588.
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2013 | Conference Paper | IST-REx-ID: 2328   OA
Aspect-oriented linearizability proofs
T.A. Henzinger, A. Sezgin, V. Vafeiadis, 8052 (2013) 242–256.
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2013 | Journal Article | IST-REx-ID: 2289   OA
Quantitative reactive modeling and verification
T.A. Henzinger, Computer Science Research and Development 28 (2013) 331–344.
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2013 | Conference Paper | IST-REx-ID: 2291   OA
Cryptographically enforced RBAC
A. Ferrara, G. Fuchsbauer, B. Warinschi, in:, IEEE, 2013, pp. 115–129.
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2013 | Journal Article | IST-REx-ID: 1307
Uniqueness of solutions of the Derrida-Lebowitz-Speer-Spohn equation and quantum drift diffusion models
J.L. Fischer, Communications in Partial Differential Equations 38 (2013) 2004–2047.
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2013 | Journal Article | IST-REx-ID: 1787
Correlations, indistinguishability and entanglement in Hong-Ou-Mandel experiments at microwave frequencies
C. Lang, C. Eichler, L. Steffen, J.M. Fink, M. Woolley, A. Blais, A. Wallraff, Nature Physics 9 (2013) 345–348.
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2013 | Journal Article | IST-REx-ID: 1977
A long road towards the structure of respiratory complex I, a giant molecular proton pump
L.A. Sazanov, R. Baradaran, R. Efremov, J. Berrisford, G. Minhas, Biochemical Society Transactions 41 (2013) 1265–1271.
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2013 | Journal Article | IST-REx-ID: 1991
Reversal of an ancient sex chromosome to an autosome in Drosophila
B. Vicoso, D. Bachtrog, Nature 499 (2013) 332–335.
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2013 | Journal Article | IST-REx-ID: 2076
Comparative sex chromosome genomics in snakes: Differentiation evolutionary strata and lack of global dosage compensation
B. Vicoso, J. Emerson, Y. Zektser, S. Mahajan, D. Bachtrog, PLoS Biology 11 (2013).
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2013 | Journal Article | IST-REx-ID: 2204   OA
Quantum phases of quadrupolar fermi gases in optical lattices
S. Bhongale, L. Mathey, E. Zhao, S. Yelin, M. Lemeshko, Physical Review Letters 110 (2013).
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2013 | Conference Paper | IST-REx-ID: 2209
Recognizing straight skeletons and Voronoi diagrams and reconstructing their input
T. Biedl, M. Held, S. Huber, in:, IEEE, 2013, pp. 37–46.
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2013 | Journal Article | IST-REx-ID: 2108
Computational design of mechanical characters
S. Coros, B. Thomaszewski, G. Noris, S. Sueda, M. Forberg, R. Sumner, W. Matusik, B. Bickel, ACM Transactions on Graphics 32 (2013).
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2013 | Journal Article | IST-REx-ID: 2110
Fabricating translucent materials using continuous pigment mixtures
M. Papas, C. Regg, W. Jarosz, B. Bickel, P. Jackson, W. Matusik, S. Marschner, M. Groß, ACM Transactions on Graphics 32 (2013).
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2013 | Journal Article | IST-REx-ID: 2139   OA View | DOI | Download (ext.)
 

2013 | Journal Article | IST-REx-ID: 2247   OA
Forgiver triumphs in alternating prisoner's dilemma
B. Zagorsky, J. Reiter, K. Chatterjee, M. Nowak, PLoS One 8 (2013).
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2013 | Conference (Editor) | IST-REx-ID: 2292
Mathematical Foundations of Computer Science 2013
K. Chatterjee, J. Sgall, eds., Mathematical Foundations of Computer Science 2013, Springer, 2013.
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