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9078 Publications
2008 | Conference Paper | IST-REx-ID: 4244
Yang E, Barton NH, Arslan T, Erdogan A. 2008. A novel shifting balance theory-based approach to optimization of an energy-constrained modulation scheme for wireless sensor networks. WCCI: IEEE World Congress on Computational Intelligence, 2749–2756.
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2008 | Journal Article | IST-REx-ID: 3038
Swarup K, Benková E, Swarup R, Casimiro I, Péret B, Yang Y, Parry G, Nielsen E, De Smet I, Vanneste S, Levesque M, Carrier D, James N, Calvo V, Ljung K, Kramer E, Roberts R, Graham N, Marillonnet S, Patel K, Jones J, Taylor C, Schachtman D, May S, Sandberg G, Benfey P, Friml J, Kerr I, Beeckman T, Laplaze L, Bennett M. 2008. The auxin influx carrier LAX3 promotes lateral root emergence. Nature Cell Biology. 10(8), 946–954.
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2008 | Journal Article | IST-REx-ID: 3037 | 
Feraru E, Friml J. 2008. PIN polar targeting. Plant Physiology. 147(4), 1553–1559.
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2008 | Journal Article | IST-REx-ID: 3196
Szeliski R, Zabih R, Scharstein D, Veksler O, Kolmogorov V, Agarwala A, Tappen M, Rother C. 2008. A comparative study of energy minimization methods for Markov random fields with smoothness-based priors. IEEE Transactions on Pattern Analysis and Machine Intelligence. 30(6), 1068–1080.
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2008 | Conference Paper | IST-REx-ID: 3198
Torresani L, Kolmogorov V, Rother C. 2008. Feature correspondence via graph matching: Models and global optimization. ECCV: European Conference on Computer Vision, LNCS, vol. 5303, 596–609.
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2008 | Conference Paper | IST-REx-ID: 3195
Vicente S, Kolmogorov V, Rother C. 2008. Graph cut based image segmentation with connectivity priors. CVPR: Computer Vision and Pattern Recognition.
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2008 | Conference Paper | IST-REx-ID: 3225
Fischlin M, Lehmann A, Pietrzak KZ. 2008. Robust multi property combiners for hash functions revisited. ICALP: Automata, Languages and Programming, LNCS, vol. 5126, 655–666.
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2008 | Journal Article | IST-REx-ID: 3291
Schmalhorst PS, Krappmann S, Vervecken W, Rohde M, Müller M, Braus G, Contreras R, Braun A, Bakker H, Routier F. 2008. Contribution of galactofuranose to the virulence of the opportunistic pathogen Aspergillus fumigatus. Eukaryotic Cell. 7(8), 1268–1277.
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2008 | Journal Article | IST-REx-ID: 3307 |
Green R, Malaspinas A, Krause J, Briggs A, Johnson P, Uhler C, Meyer M, Good J, Maricic T, Stenzel U, Prüfer K, Siebauer M, Burbano H, Ronan M, Rothberg J, Egholm M, Rudan P, Brajković D, Kućan Ž, Gušić I, Wikström M, Laakkonen L, Kelso J, Slatkin M, Pääbo S. 2008. A complete neandertal mitochondrial genome sequence determined by highhhroughput sequencing. Cell. 134, 416–426.
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2008 | Journal Article | IST-REx-ID: 3435 |
Bollback JP, York T, Nielsen R. 2008. Estimation of 2Nes From Temporal Allele Frequency Data. Genetics. 179(1), 497–502.
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2008 | Journal Article | IST-REx-ID: 3530
Fuentealba P, Begum R, Capogna M, Jinno S, Marton L, Csicsvari JL, Thomson A, Somogyi P, Klausberger T. 2008. Ivy cells: A population of nitric-oxide-producing, slow-spiking GABAergic neurons and their involvement in hippocampal network activity. Neuron. 57(6), 917–929.
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2008 | Journal Article | IST-REx-ID: 3544
Mallet N, Pogosyan A, Sharott A, Csicsvari JL, Bolam J, Brown P, Magill P. 2008. Disrupted dopamine transmission and the emergence of exaggerated beta oscillations in subthalamic nucleus and cerebral cortex. Journal of Neuroscience. 28(18), 4795–4806.
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2008 | Conference Paper | IST-REx-ID: 3694
Goldstein M, Lampert C, Reif M, Stahl A, Breuel T. 2008. Bayes optimal DDoS mitigation by adaptive history-based IP filtering. ICN: International Conference on Networking, 174–179.
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2008 | Conference Paper | IST-REx-ID: 3706
Lampert C, Blaschko M. 2008. Joint kernel support estimation for structured prediction. NIPS SISO: NIPS Workshop on ‘Structured Input - Structured Output’, 1–4.
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2008 | Journal Article | IST-REx-ID: 3740 |
Tkačik G, Callan C, Bialek W. 2008. Information flow and optimization in transcriptional regulation. PNAS. 105(34), 12265–12270.
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2008 | Journal Article | IST-REx-ID: 3744 |
Tkačik G, Magnasco M. 2008. Decoding spike timing: The differential reverse-correlation method. Biosystems. 93(1–2), 90–100.
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2008 | Journal Article | IST-REx-ID: 3760
Wojtan C, Turk G. 2008. Fast viscoelastic behavior with thin features. ACM Transactions on Graphics. 27(3).
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2008 | Journal Article | IST-REx-ID: 3825 |
Aponte Y, Bischofberger J, Jonas PM. 2008. Efficient Ca(2+) buffering in fast-spiking basket cells of rat hippocampus. Journal of Physiology. 586(8), 2061–75.
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2008 | Journal Article | IST-REx-ID: 3822 |
Schmidt Hieber C, Jonas PM, Bischofberger J. 2008. Action potential initiation and propagation in hippocampal mossy fibre axons. Journal of Physiology. 586(7), 1849–57.
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2008 | Conference Paper | IST-REx-ID: 3880
Berwanger D, Chatterjee K, Doyen L, Henzinger TA, Raje S. 2008. Strategy construction for parity games with imperfect information. CONCUR: Concurrency Theory, LNCS, vol. 5201, 325–339.
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2008 | Journal Article | IST-REx-ID: 3906
Cremer S, Ugelvig LV, Drijfhout F, Schlick Steiner B, Steiner F, Seifert B, Hughes D, Schulz A, Petersen K, Konrad H, Stauffer C, Kiran K, Espadaler X, D’Ettorre P, Aktaç N, Eilenberg J, Jones G, Nash D, Pedersen J, Boomsma J. 2008. The evolution of invasiveness in garden ants. PLoS One. 3(12).
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2008 | Journal Article | IST-REx-ID: 3970
Dequéant M, Ahnert S, Edelsbrunner H, Fink T, Glynn E, Hattem G, Kudlicki A, Mileyko Y, Morton J, Mushegian A, Pachter L, Rowicka M, Shiu A, Sturmfels B, Pourquie O. 2008. Comparison of pattern detection methods in microarray time series of the segmentation clock. PLoS One. 3(8).
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2008 | Book Chapter | IST-REx-ID: 3969
Edelsbrunner H, Harer J. 2008.Persistent homology - a survey. In: Surveys on Discrete and Computational Geometry: Twenty Years Later. Contemporary Mathematics, , 257–282.
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2008 | Journal Article | IST-REx-ID: 4141
Vervenne H, Crombez K, Lambaerts K, Carvalho L, Köppen M, Heisenberg C-PJ, Van De Ven W, Petit M. 2008. Lpp is involved in Wnt/PCP signaling and acts together with Scrib to mediate convergence and extension movements during zebrafish gastrulation. Developmental Biology. 320(1), 267–277.
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2008 | Conference Paper | IST-REx-ID: 4384 |
Guerraoui R, Henzinger TA, Jobstmann B, Singh V. 2008. Model checking transactional memories. PLDI: Programming Languages Design and Implementation, 372–382.
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2008 | Conference Paper | IST-REx-ID: 4386
Guerraoui R, Henzinger TA, Singh V. 2008. Permissiveness in transactional memories. DISC: Distributed Computing, LNCS, vol. 5218, 305–319.
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2008 | Conference Paper | IST-REx-ID: 4387
Guerraoui R, Henzinger TA, Singh V. 2008. Completeness and nondeterminism in model checking transactional memories. CONCUR: Concurrency Theory, LNCS, vol. 5201, 21–35.
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2008 | Conference Paper | IST-REx-ID: 4397
Beyer D, Zufferey D, Majumdar R. 2008. CSIsat: Interpolation for LA+EUF. CAV: Computer Aided Verification, LNCS 5123, , 304–308.
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2008 | Conference Paper | IST-REx-ID: 4400
Aviv A, Cerny P, Clark S, Cronin E, Shah G, Sherr M, Blaze M. 2008. Security Evaluation of ES&S Voting Machines and Election Management System. Usenix/ Accurate Electronic Voting Technology Workshop (EVT) 08.
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2008 | Thesis | IST-REx-ID: 4409 |
Prabhu V. 2008. Games for the verification of timed systems. University of California, Berkeley.
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2008 | Thesis | IST-REx-ID: 4415
Matic S. 2008. Compositionality in deterministic real-time embedded systems. University of California, Berkeley.
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2008 | Conference Paper | IST-REx-ID: 4452
Henzinger TA, Hottelier T, Kovács L. 2008. Valigator: A verification tool with bound and invariant generation. LPAR: Logic for Programming, Artificial Intelligence, and Reasoning, LNCS, vol. 5330, 333–342.
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2008 | Journal Article | IST-REx-ID: 4509
Henzinger TA. 2008. Two challenges in embedded systems design: Predictability and robustness. Philosophical Transactions of the Royal Society A Mathematical Physical and Engineering Sciences. 366(1881), 3727–3736.
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2008 | Thesis | IST-REx-ID: 4524
Ghosal A. 2008. A hierarchical coordination language for reliable real-time tasks. University of California, Berkeley.
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2008 | Conference Paper | IST-REx-ID: 4521
Gupta A, Henzinger TA, Majumdar R, Rybalchenko A, Xu R. 2008. Proving non-termination. POPL: Principles of Programming Languages, 147–158.
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2008 | Conference Paper | IST-REx-ID: 4527
Fisher J, Henzinger TA, Mateescu M, Piterman N. 2008. Bounded asynchrony: Concurrency for modeling cell-cell interactions. FMSB: Formal Methods in Systems Biology, LNCS, vol. 5054, 17–32.
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2008 | Journal Article | IST-REx-ID: 4532
Doyen L, Henzinger TA, Raskin J. 2008. Equivalence of labeled Markov chains. International Journal of Foundations of Computer Science. 19(3), 549–563.
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2008 | Conference Paper | IST-REx-ID: 4533
Doyen L, Henzinger TA, Jobstmann B, Petrov T. 2008. Interface theories with component reuse. EMSOFT: Embedded Software , 79–88.
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2008 | Journal Article | IST-REx-ID: 4534
Chatterjee K, Henzinger TA. 2008. Reduction of stochastic parity to stochastic mean-payoff games. Information Processing Letters. 106(1), 1–7.
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2008 | Conference Paper | IST-REx-ID: 4546
Chatterjee K, Ghosal A, Henzinger TA, Iercan D, Kirsch C, Pinello C, Sangiovanni Vincentelli A. 2008. Logical reliability of interacting real-time tasks. DATE: Design, Automation and Test in Europe, 909–914.
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2008 | Journal Article | IST-REx-ID: 4548
Chatterjee K, Majumdar R, Henzinger TA. 2008. Stochastic limit-average games are in EXPTIME. International Journal of Game Theory. 37(2), 219–234.
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2008 | Conference Paper | IST-REx-ID: 4568
Beyer D, Henzinger TA, Théoduloz G. 2008. Program analysis with dynamic change of precision. ASE: Automated Software Engineering, 29–38.
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2008 | Conference Paper | IST-REx-ID: 584
Hosten O, Kwiat P. 2008. Spin hall effect of light via weak measurements: Sharp and smooth index variations. QELS: Quantum Electronics and Laser Science Conference, Optics InfoBase Conference Papers, .
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2008 | Journal Article | IST-REx-ID: 6146 |
Bretscher AJ, Busch KE, de Bono M. 2008. A carbon dioxide avoidance behavior is integrated with responses to ambient oxygen and food in Caenorhabditis elegans. Proceedings of the National Academy of Sciences. 105(23), 8044–8049.
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2008 | Journal Article | IST-REx-ID: 6148
Kammenga JE, Phillips PC, de Bono M, Doroszuk A. 2008. Beyond induced mutants: using worms to study natural variation in genetic pathways. Trends in Genetics. 24(4), 178–185.
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2008 | Journal Article | IST-REx-ID: 6149
Olofsson B, de Bono M. 2008. Sleep: dozy worms and sleepy flies. Current Biology. 18(5), R204–R206.
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2008 | Conference Paper | IST-REx-ID: 7425
Santis M, Freunberger SA, Papra M, Büchi FN. 2008. Experimental investigation of the propagation of local current density variations to adjacent cells in PEFC stacks. 3rd International Conference on Fuel Cell Science, Engineering and Technology. International conference on fuel cell science, engineering and technology, 763–765.
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2008 | Journal Article | IST-REx-ID: 8481
Bersch B, Favier A, Schanda P, van Aelst S, Vallaeys T, Covès J, Mergeay M, Wattiez R. 2008. Molecular structure and metal-binding properties of the periplasmic CopK protein expressed in Cupriavidus metallidurans CH34 during copper challenge. Journal of Molecular Biology. 380(2), 386–403.
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2008 | Journal Article | IST-REx-ID: 8480
Schanda P, Brutscher B, Konrat R, Tollinger M. 2008. Folding of the KIX domain: Characterization of the equilibrium analog of a folding intermediate using 15N/13C relaxation dispersion and fast 1H/2H amide exchange NMR spectroscopy. Journal of Molecular Biology. 380(4), 726–741.
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2008 | Journal Article | IST-REx-ID: 9537
Zilberman D. 2008. The evolving functions of DNA methylation. Current Opinion in Plant Biology. 11(5), 554–559.
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2008 | Journal Article | IST-REx-ID: 965 |
Morozov A, Serbyn M. 2008. Nonlinear algebra and Bogoliubov’s recursion. Theoretical and Mathematical Physics. 154(2), 270–293.
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2008 | Journal Article | IST-REx-ID: 9457 |
Zilberman D, Coleman-Derr D, Ballinger T, Henikoff S. 2008. Histone H2A.Z and DNA methylation are mutually antagonistic chromatin marks. Nature. 456(7218), 125–129.
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2008 | Journal Article | IST-REx-ID: 13423
Klajn R, Gray TP, Wesson PJ, Myers BD, Dravid VP, Smoukov SK, Grzybowski BA. 2008. Bulk synthesis and surface patterning of nanoporous metals and alloys from supraspherical nanoparticle aggregates. Advanced Functional Materials. 18(18), 2763–2769.
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