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6032 Publications


2001 | Conference Paper | IST-REx-ID: 4634
The control of synchronous systems, Part II
L. De Alfaro, T.A. Henzinger, F. Mang, in:, Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2001, pp. 566–581.
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2001 | Conference Paper | IST-REx-ID: 4635
MCWEB: A model-checking tool for web-site debugging
L. De Alfaro, T.A. Henzinger, F. Mang, in:, ACM, 2001, pp. 86–87.
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2001 | Conference Paper | IST-REx-ID: 4636
From verification to control: dynamic programs for omega-regular objectives
L. De Alfaro, T.A. Henzinger, R. Majumdar, in:, IEEE, 2001, pp. 279–290.
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2001 | Journal Article | IST-REx-ID: 2709
Long time dynamics of an electron in a weakly coupled phonon field
L. Erdös, ICMP: International Congress on Mathematical Physics (2001) 273–281.
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2001 | Journal Article | IST-REx-ID: 2734
The kernel of Dirac operators on S3 and R3
L. Erdös, J. Solovej, Reviews in Mathematical Physics 13 (2001) 1247–1280.
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2001 | Journal Article | IST-REx-ID: 2735
Lifschitz tail in a magnetic field: Coexistence of classical and quantum behavior in the borderline case
L. Erdös, Probability Theory and Related Fields 121 (2001) 219–236.
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2001 | Journal Article | IST-REx-ID: 2736 | OA
Derivation of the nonlinear Schrödinger equation from a many body Coulomb system
L. Erdös, H. Yau, Advances in Theoretical and Mathematical Physics 5 (2001) 1169–1205.
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2001 | Journal Article | IST-REx-ID: 2981 | OA
Arabidopsis thaliana Rop GTPases are localized to tips of root hairs and control polar growth
A. Molendijk, F. Bischoff, C. Rajendrakumar, J. Friml, M. Braun, S. Gilroy, K. Palme, EMBO Journal 20 (2001) 2779–2788.
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2001 | Journal Article | IST-REx-ID: 2982
BIG: A calossin-like protein required for polar auxin transport in Arabidopsis
P. Gil, E. Dewey, J. Friml, Y. Zhao, K. Snowden, J. Putterill, K. Palme, M. Estelle, J. Chory, Genes and Development 15 (2001) 1985–1997.
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2001 | Journal Article | IST-REx-ID: 2983
Auxin transport inhibitors block PIN1 cycling and vesicle trafficking
N. Geldner, J. Friml, Y. Stierhof, G. Jürgens, K. Palme, Nature 413 (2001) 425–428.
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2001 | Journal Article | IST-REx-ID: 2984
Localization of the auxin permease AUX1 suggests two functionally distinct hormone transport pathways operate in the Arabidopsis root apex
R. Swarup, J. Friml, A. Marchant, K. Ljung, G. Sandberg, K. Palme, M. Bennett, Genes and Development 15 (2001) 2648–2653.
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2001 | Journal Article | IST-REx-ID: 2985
Elimination voltammetry of adenine and cytosine mixtures
L. Trnková, J. Friml, O. Dračka, Bioelectrochemistry 54 (2001) 131–136.
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2001 | Journal Article | IST-REx-ID: 841
Footprints of primordial introns on the eukaryotic genome: still no clear traces
Y. Wolf, F. Kondrashov, E. Koonin, Trends in Genetics 17 (2001) 499–501.
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2001 | Journal Article | IST-REx-ID: 851
Use of mutation spectra analysis software
I. Rogozin, F. Kondrashov, G. Glazko, Human Mutation 17 (2001) 83–102.
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2001 | Journal Article | IST-REx-ID: 855
Presence of ATG triplets in 5′ untranslated regions of eukaryotic cDNAs correlates with a 'weak'context of the start codon
I. Rogozin, A. Kochetov, F. Kondrashov, E. Koonin, L. Milanesi, Bioinformatics 17 (2001) 890–900.
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2001 | Journal Article | IST-REx-ID: 867
Origin of alternative splicing by tandem exon duplication
F. Kondrashov, E. Koonin, Human Molecular Genetics 10 (2001) 2661–2669.
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2001 | Journal Article | IST-REx-ID: 874
Multidimensional epistasis and the disadvantage of sex
F. Kondrashov, A. Kondrashov, PNAS 98 (2001) 12089–12092.
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2001 | Journal Article | IST-REx-ID: 888
Constant relative rate of protein evolution and detection of functional diversification among bacterial, archaeal and eukaryotic proteins
I. Jordan, F. Kondrashov, I. Rogozin, R. Tatusov, Y. Wolf, E. Koonin, Genome Biology 2 (2001).
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2001 | Journal Article | IST-REx-ID: 1452 | OA
Examples of mirror partners arising from integrable systems
T. Hausel, M. Thaddeus, Comptes Rendus de l’Academie Des Sciences - Series I: Mathematics 333 (2001) 313–318.
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2001 | Journal Article | IST-REx-ID: 1453 | OA
Geometric construction of new Yang-Mills instantons over Taub-NUT space
G. Etesi, T. Hausel, Physics Letters, Section B: Nuclear, Elementary Particle and High-Energy Physics 514 (2001) 189–199.
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2001 | Journal Article | IST-REx-ID: 1454 | OA
Geometric interpretation of Schwarzschild instantons
G. Etesi, T. Hausel, Journal of Geometry and Physics 37 (2001) 126–136.
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2001 | Conference Paper | IST-REx-ID: 3169
Computing visual correspondence with occlusions using graph cuts
V. Kolmogorov, R. Zabih, in:, IEEE, 2001, pp. 508–515.
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2001 | Book Chapter | IST-REx-ID: 3434
Application of the likelihood function in phylogenetic analysis
J. Huelsenbeck, J.P. Bollback, in:, D. Balding, M. Bishop, C. Cannings (Eds.), Handbook of Statistical Genetics, Wiley-Blackwell, 2001, pp. 415–439.
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2001 | Journal Article | IST-REx-ID: 3438
Bayesian inference of phylogeny and its impact on evolutionary biology
J. Huelsenbeck, F. Ronquist, R. Nielsen, J.P. Bollback, Science 294 (2001) 2310–2314.
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2001 | Journal Article | IST-REx-ID: 3439
Isolation of polymorphic microsatellite markers from the malaria vector Anopheles darlingi
J. Conn, J.P. Bollback, D. Onyabe, T. Robinson, R. Wilkerson, M. Povoa, Molecular Ecology Notes 1 (2001) 223–225.
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2001 | Journal Article | IST-REx-ID: 3440
Empirical and hierarchical Bayesian estimation of ancestral states
J. Huelsenbeck, J.P. Bollback, Systematic Biology 50 (2001) 351–366.
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2001 | Conference Paper | IST-REx-ID: 3447
Weighted quantified computation tree logic
K. Chatterjee, P. Dasgupta, P. Chakrabarti, in:, Elsevier, 2001.
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2001 | Journal Article | IST-REx-ID: 3493 | OA
Microscopic kinetics and energetics distinguish GABAA receptor agonists from antagonists
M.. Jones, P.M. Jonas, Y. Sahara, G. Westbrook, Biophysical Journal 81 (2001) 2660–2670.
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2001 | Journal Article | IST-REx-ID: 3494
Rapid signaling at inhibitory synapses in a dentate gyrus interneuron network.
M. Bartos, I. Vida, M. Frotscher, J. Geiger, P.M. Jonas, Journal of Neuroscience 21 (2001) 2687–2698.
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2001 | Journal Article | IST-REx-ID: 3495
Impaired NMDA receptor function in mouse olfactory bulb neurons by tetracycline-sensitive NR1 (N598R) expression
J. Jerecic, C. Schulze, P.M. Jonas, R. Sprengel, P. Seeburg, J. Bischofberger, Molecular Brain Research 94 (2001) 96–104.
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2001 | Journal Article | IST-REx-ID: 3496 | OA
PTP and LTP at a hippocampal mossy fiber-interneuron synapse
H. Alle, P.M. Jonas, J. Geiger, PNAS 98 (2001) 14708–14713.
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2001 | Patent | IST-REx-ID: 3507
Molecular classification for property prediction
J. Liang, H. Edelsbrunner, (2001).
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2001 | Journal Article | IST-REx-ID: 3517
The application of printed circuit board technology for fabrication of multi-channel micro-drives
I. Szabo, A. Czurkó, J.L. Csicsvari, H. Hirase, X. Leinekugel, G. Buzsáki, Journal of Neuroscience Methods 105 (2001) 105–110.
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2001 | Journal Article | IST-REx-ID: 3540
Firing rates of hippocampal neurons are preserved during subsequent sleep episodes and modified by novel awake experience
H. Hirase, X. Leinekugel, A. Czurkó, J.L. Csicsvari, G. Buzsáki, PNAS 98 (2001) 9386–9390.
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2001 | Journal Article | IST-REx-ID: 3546
Behavior-dependent states of the hippocampal network affect functional clustering of neurons
H. Hirase, X. Leinekugel, J.L. Csicsvari, A. Czurkó, G. Buzsáki, Journal of Neuroscience 21 (2001).
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2001 | Book | IST-REx-ID: 3586
Geometry and Topology for Mesh Generation
H. Edelsbrunner, Geometry and Topology for Mesh Generation, Cambridge University Press, 2001.
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2001 | Book Review | IST-REx-ID: 3596
Mendel and mathematics
N.H. Barton, Trends in Genetics 17 (2001) 420–420.
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2001 | Journal Article | IST-REx-ID: 3622
Genetic variation for preadult viability in Drosophila melanogaster
M. Gardner, K. Fowler, L. Patridge, N.H. Barton, Evolution 55 (2001) 1609–1620.
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2001 | Journal Article | IST-REx-ID: 4200
A mutation in the Gsk3-binding domain of zebrafish Masterblind/Axin1 leads to a fate transformation of telencephalon and eyes to diencephalon
C.-P.J. Heisenberg, C. Houart, M. Take Uchi, G. Rauch, N. Young, P. Coutinho, I. Masai, L. Caneparo, M. Concha, R. Geisler, T. Dale, S. Wilson, D. Stemple, Genes and Development 15 (2001) 1427–1434.
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2001 | Journal Article | IST-REx-ID: 8522
A stretched exponential bound on the rate of growth of the number of periodic points for prevalent diffeomorphisms I
V. Kaloshin, B.R. Hunt, Electronic Research Announcements of the American Mathematical Society 7 (2001) 17–27.
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2001 | Journal Article | IST-REx-ID: 8524
Diophantine properties of elements of SO(3)
V. Kaloshin, I. Rodnianski, Geometric And Functional Analysis 11 (2001) 953–970.
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2001 | Journal Article | IST-REx-ID: 8521
A stretched exponential bound on the rate of growth of the number of periodic points for prevalent diffeomorphisms II
V. Kaloshin, B.R. Hunt, Electronic Research Announcements of the American Mathematical Society 7 (2001) 28–36.
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2000 | Conference Paper | IST-REx-ID: 2325
Inequalities for Schrödinger operators and applications to the stability of matter problem
R. Seiringer, in:, American Mathematical Society, 2000, pp. 53–72.
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2000 | Conference Paper | IST-REx-ID: 2342 | OA
The ground state energy and density of interacting bosons in a trap
R. Seiringer, É. Lieb, J. Yngvason, in:, World Scientific Publishing, 2000, pp. 101–110.
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2000 | Journal Article | IST-REx-ID: 2343 | OA
On the ordering of energy levels in homogeneous magnetic fields
B. Baumgartner, R. Seiringer, Letters in Mathematical Physics 54 (2000) 213–226.
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2000 | Journal Article | IST-REx-ID: 2344 | OA
Bosons in a trap: A rigorous derivation of the Gross-Pitaevskii energy functional
É. Lieb, R. Seiringer, J. Yngvason, Physical Review A - Atomic, Molecular, and Optical Physics 61 (2000) 436021–4360213.
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2000 | Conference Paper | IST-REx-ID: 2418 View | DOI
 

2000 | Book Chapter | IST-REx-ID: 2494
Chapter III Metabotropic glutamate receptors - immunocytochemical and in situ hybridization analyses
R. Shigemoto, N. Mizuno, in:, Glutamate, Elsevier, 2000, pp. 63–98.
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2000 | Journal Article | IST-REx-ID: 2598
Paraneoplastic cerebellar ataxia due to autoantibodies against a glutamate receptor
P. Sillevis Smitt, A. Kinoshita, B. De Leeuw, W. Moll, M. Coesmans, D. Jaarsma, S. Henzen Logmans, C. Vecht, C. De Zeeuw, N. Sekiyama, S. Nakanishi, R. Shigemoto, New England Journal of Medicine 342 (2000) 21–27.
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2000 | Journal Article | IST-REx-ID: 2599
Relationship between neurokinin-1 receptor and substance P in the striatum: Light and electron microscopic immunohistochemical study in the rat
J. Li, D. Wang, T. Kaneko, R. Shigemoto, S. Nomura, N. Mizuno, Journal of Comparative Neurology 418 (2000) 156–163.
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2000 | Journal Article | IST-REx-ID: 2600
The relationship between neurokinin-1 receptor and substance P in the medullary dorsal horn: A light and electron microscopic immunohistochemical study in the rat
J. Li, D. Wang, T. Kaneko, R. Shigemoto, S. Nomura, N. Mizuno, Neuroscience Research 36 (2000) 327–334.
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2000 | Journal Article | IST-REx-ID: 2601
mGluR1 in cerebellar Purkinje cells essential for long-term depression, synapse elimination, and motor coordination
T. Ichise, M. Kano, K. Hashimoto, D. Yanagihara, K. Nakao, R. Shigemoto, M. Katsuki, A. Aiba, Science 288 (2000) 1832–1835.
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2000 | Journal Article | IST-REx-ID: 2602
Selective blockade of P/Q-type calcium channels by the metabotropic glutamate receptor type 7 involves a phospholipase C pathway in neurons
J. Perroy, L. Prezèau, M. De Waard, R. Shigemoto, J. Bockaërt, L. Fagni, Journal of Neuroscience 20 (2000) 7896–7904.
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2000 | Journal Article | IST-REx-ID: 2603
Presynaptic clustering of mGluR7a requires the PICK1 PDZ domain binding site
H. Boudin, A. Doan, J. Xia, R. Shigemoto, R. Huganir, P. Worley, A. Craig, Neuron 28 (2000) 485–497.
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2000 | Journal Article | IST-REx-ID: 3923
Paternity analysis with AFLPs in Cardiocondyla ants
S. Cremer, B.I.F. Futura 15 (2000) 68–71.
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2000 | Journal Article | IST-REx-ID: 4004
Edgewise subdivision of a simplex
H. Edelsbrunner, D. Grayson, Discrete & Computational Geometry 24 (2000) 707–719.
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2000 | Conference Paper | IST-REx-ID: 4008
Topological persistance and simplification
H. Edelsbrunner, D. Letscher, A. Zomorodian, in:, IEEE, 2000, pp. 454–463.
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2000 | Journal Article | IST-REx-ID: 4009
Adaptive simplicial grids from cross-sections of monotone complexes
H. Edelsbrunner, R. Waupotitsch, International Journal of Computational Geometry and Applications 10 (2000) 267–284.
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2000 | Journal Article | IST-REx-ID: 4010
Sliver exudation
S. Cheng, T. Dey, H. Edelsbrunner, M. Facello, S. Teng, Journal of the ACM 47 (2000) 883–904.
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2000 | Book Review | IST-REx-ID: 4268
Evolving evolvability
L. Partridge, N.H. Barton, Nature 407 (2000) 457–458.
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2000 | Journal Article | IST-REx-ID: 4269
Is Wright’s shifting balance process important in evolution?
J. Coyne, N.H. Barton, M. Turelli, Evolution; International Journal of Organic Evolution 54 (2000) 306–317.
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2000 | Journal Article | IST-REx-ID: 4270
Detecting bottlenecks and selective sweeps from DNA sequence polymorphism
N. Galtier, F. Depaulis, N.H. Barton, Genetics 155 (2000) 981–987.
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2000 | Journal Article | IST-REx-ID: 4271
The effects of epistasis on the structure of hybrid zones
N.H. Barton, M. Shpak, Genetical Research 75 (2000) 179–198.
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2000 | Journal Article | IST-REx-ID: 4272
The stability of symmetrical solutions to polygenic models
N.H. Barton, M. Shpak, Theoretical Population Biology 57 (2000) 249–263.
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2000 | Journal Article | IST-REx-ID: 4273
Limits to natural selection
N.H. Barton, L. Partridge, Bioessays : News and Reviews in Molecular, Cellular and Developmental Biology 22 (2000) 1075–1084.
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2000 | Journal Article | IST-REx-ID: 4274 | OA
Genetic hitchhiking
N.H. Barton, Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences 355 (2000) 1553–1562.
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2000 | Book Chapter | IST-REx-ID: 4275
Differentiation
N.H. Barton, in:, Encyclopedia of Biodiversity, Academic Press, 2000, pp. 85–94.
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2000 | Book Review | IST-REx-ID: 4276
Population genetics of multiple loci
N.H. Barton, Genetical Research 75 (2000) 371–373.
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2000 | Conference Paper | IST-REx-ID: 4433
Fair bisimulation
T.A. Henzinger, S. Rajamani, in:, Springer, 2000, pp. 299–314.
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2000 | Conference Paper | IST-REx-ID: 4434
Robust undecidability of timed and hybrid systems
T.A. Henzinger, J. Raskin, in:, Springer, 2000, pp. 145–159.
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2000 | Conference Paper | IST-REx-ID: 4435
Symbolic model checking for rectangular hybrid systems
T.A. Henzinger, R. Majumdar, in:, Springer, 2000, pp. 142–156.
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2000 | Conference Paper | IST-REx-ID: 4439
A classification of symbolic transition systems
T.A. Henzinger, R. Majumdar, in:, Springer, 2000, pp. 13–34.
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2000 | Conference Paper | IST-REx-ID: 4481
Beyond HyTech: Hybrid systems analysis using interval numerical methods
T.A. Henzinger, B. Horowitz, R. Majumdar, H. Wong Toi, in:, Springer, 2000, pp. 130–144.
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2000 | Conference Paper | IST-REx-ID: 4482
Abstract interpretation of game properties
T.A. Henzinger, R. Majumdar, F. Mang, J. Raskin, in:, Springer, 2000, pp. 220–239.
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2000 | Conference Paper | IST-REx-ID: 4483
Decomposing refinement proofs using assume-guarantee reasoning
T.A. Henzinger, S. Qadeer, S. Rajamani, in:, IEEE, 2000, pp. 245–252.
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2000 | Conference Paper | IST-REx-ID: 4512
Masaccio: A formal model for embedded components
T.A. Henzinger, in:, Springer, 2000, pp. 549–563.
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2000 | Book Chapter | IST-REx-ID: 4513
The theory of hybrid automata
T.A. Henzinger, in:, M. Inan, R. Kurshan (Eds.), Verification of Digital and Hybrid Systems, Springer, 2000, pp. 265–292.
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2000 | Journal Article | IST-REx-ID: 4598
Discrete abstractions of hybrid systems
R. Alur, T.A. Henzinger, G. Lafferriere, G. Pappas, Proceedings of the IEEE 88 (2000) 971–984.
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2000 | Conference Paper | IST-REx-ID: 4627
Concurrent omega-regular games
L. De Alfaro, T.A. Henzinger, in:, IEEE, 2000, pp. 141–154.
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2000 | Conference Paper | IST-REx-ID: 4637
The control of synchronous systems
L. De Alfaro, T.A. Henzinger, F. Mang, in:, Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2000, pp. 458–473.
View | DOI
 

2000 | Conference Paper | IST-REx-ID: 4638
Detecting errors before reaching them
L. De Alfaro, T.A. Henzinger, F. Mang, in:, Springer, 2000, pp. 186–201.
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2000 | Conference Paper | IST-REx-ID: 2710
The kernel of Dirac operators on S3 and R3
L. Erdös, in:, American Mathematical Society, 2000, pp. 111–119.
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2000 | Journal Article | IST-REx-ID: 2731
Linear Boltzmann equation as the weak coupling limit of a random Schrödinger equation
L. Erdös, H. Yau, Communications on Pure and Applied Mathematics 53 (2000) 667–735.
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2000 | Journal Article | IST-REx-ID: 2732
Fokker-Planck equations as scaling limits of reversible quantum systems
F. Castella, L. Erdös, F. Frommlet, P. Markowich, Journal of Statistical Physics 100 (2000) 543–601.
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2000 | Journal Article | IST-REx-ID: 2733
Diamagnetic behavior of sums Dirichlet eigenvalues
L. Erdös, M. Loss, V. Vougalter, Annales de l’Institut Fourier 50 (2000) 891–907.
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2000 | Journal Article | IST-REx-ID: 3149
Interaction of Drosophila melanogaster prohormone convertase 2 and 7B2: Insect cell specific processing and secretion
J. Hwang, D.E. Siekhaus, R. Fuller, P. Taghert, I. Lindberg, Journal of Biological Chemistry 275 (2000) 17886–17893.
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2000 | Conference Paper | IST-REx-ID: 1736
Comparison of the impact of FWM on binary, duobinary and dicode modulation in DWDM systems
G. Katsaros, P. Lane, M. Murphy, in:, IEEE, 2000, pp. 27–28.
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2000 | Journal Article | IST-REx-ID: 1957 View | DOI
 

2000 | Journal Article | IST-REx-ID: 1958
Resolution of the membrane domain of bovine complex I into subcomplexes: implications for the structural organization of the enzyme
L.A. Sazanov, S. Peak Chew, I. Fearnley, J. Walker, Biochemistry 39 (2000) 7229–7235.
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2000 | Journal Article | IST-REx-ID: 842
No footprints of primordial introns in a eukaryotic genome
Y. Wolf, F. Kondrashov, E. Koonin, Trends in Genetics 16 (2000) 333–334.
View | DOI
 

2000 | Journal Article | IST-REx-ID: 1455 | OA
Inscribing cubes and covering by rhombic dodecahedra via equivariant topology
T. Hausel, E. Makai, A. Szücs, Mathematika 47 (2000) 371–397.
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2000 | Journal Article | IST-REx-ID: 3489
Efficacy and stability of quantal GABA release at a hippocampal interneuron-principal neuron synapse
U. Kraushaar, P.M. Jonas, Journal of Neuroscience 20 (2000) 5594–5607.
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2000 | Journal Article | IST-REx-ID: 3490
Associative long-term depression in the hippocampus is dependent on postsynaptic N-type Ca(2+) channels
C. Normann, D. Peckys, C. Schulze, J. Walden, P.M. Jonas, J. Bischofberger, Journal of Neuroscience 20 (2000) 8290–8297.
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2000 | Journal Article | IST-REx-ID: 3491
Distal initiation and active propagation of action potentials in interneuron dendrites
M. Martina, I. Vida, P.M. Jonas, Science 287 (2000) 295–300.
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2000 | Journal Article | IST-REx-ID: 3492 View | DOI
 

2000 | Journal Article | IST-REx-ID: 3532
Intracellular features predicted by extracellular recordings in the hippocampus in vivo
D. Henze, Z. Borhegyi, J.L. Csicsvari, A. Mamiya, K. Harris, G. Buzsáki, Journal of Neurophysiology 84 (2000) 390–400.
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2000 | Journal Article | IST-REx-ID: 3542
Ensemble patterns of hippocampal CA3-CA1 neurons during sharp wave-associated population events
J.L. Csicsvari, H. Hirase, A. Mamiya, G. Buzsáki, Neuron 28 (2000) 585–594.
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2000 | Journal Article | IST-REx-ID: 3548
Accuracy of tetrode spike separation as determined by simultaneous intracellular and extracellular measurements
K. Harris, D. Henze, J.L. Csicsvari, H. Hirase, G. Buzsáki, Journal of Neurophysiology 84 (2000) 401–414.
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2000 | Conference Paper | IST-REx-ID: 3555
Smoothing and cleaning up slivers
H. Edelsbrunner, X. Li, G. Miller, A. Stathopoulos, D. Talmor, S. Teng, A. Üngör, N. Walkington, in:, ACM, 2000, pp. 273–277.
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2000 | Book Chapter | IST-REx-ID: 3572
Spielereien mit Kreisen und Kugeln. Zum Thema Form und Verformung
H. Edelsbrunner, in:, Zur Kunst Des Formalen Denkens, Passagen Verlag, 2000, pp. 153–171.
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