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7270 Publications
2010 | Conference Paper | IST-REx-ID: 3793 |

Nowozin S, Gehler P, Lampert C. 2010. On parameter learning in CRF-based approaches to object class image segmentation. ECCV: European Conference on Computer Vision, LNCS, vol. 6316, 98–111.
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2010 | Conference Paper | IST-REx-ID: 3794
Lampert C, Krömer O. 2010. Weakly-paired maximum covariance analysis for multimodal dimensionality reduction and transfer learning. ECCV: European Conference on Computer Vision, LNCS, vol. 6312, 566–579.
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2010 | Book Chapter | IST-REx-ID: 3795 |

Edelsbrunner H, Morozov D, Patel A. 2010.The stability of the apparent contour of an orientable 2-manifold. In: Topological Data Analysis and Visualization: Theory, Algorithms and Applications. Mathematics and Visualization, , 27–42.
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2010 | Journal Article | IST-REx-ID: 3831 |

Norenberg A, Hu H, Vida I, Bartos M, Jonas PM. 2010. Distinct nonuniform cable properties optimize rapid and efficient activation of fast-spiking GABAergic interneurons. PNAS. 107(2), 894–9.
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2010 | Journal Article | IST-REx-ID: 3832 |

Guzmán J, Jonas PM. 2010. Beyond TARPs: The growing list of auxiliary AMPAR subunits. Neuron. 66(1), 8–10.
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| PubMed | Europe PMC
2010 | Journal Article | IST-REx-ID: 3834 |

Wolf V, Goel R, Mateescu M, Henzinger TA. 2010. Solving the chemical master equation using sliding windows. BMC Systems Biology. 4(42), 1–19.
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2010 | Conference Paper | IST-REx-ID: 3838 |

Henzinger TA, Mateescu M, Mikeev L, Wolf V. 2010. Hybrid numerical solution of the chemical master equation. CMSB: Computational Methods in Systems Biology, 55–65.
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2010 | Conference Paper | IST-REx-ID: 3839 |

Henzinger TA, Hottelier T, Kovács L, Voronkov A. 2010. Invariant and type inference for matrices. VMCAI: Verification, Model Checking and Abstract Interpretation, LNCS, vol. 5944, 163–179.
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2010 | Journal Article | IST-REx-ID: 3842 |

Didier F, Henzinger TA, Mateescu M, Wolf V. 2010. Fast adaptive uniformization of the chemical master equation. IET Systems Biology. 4(6), 441–452.
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2010 | Conference Paper | IST-REx-ID: 3845 |

Henzinger TA, Hottelier T, Kovács L, Rybalchenko A. 2010. Aligators for arrays. LPAR: Logic for Programming, Artificial Intelligence, and Reasoning, LNCS, vol. 6397, 348–356.
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2010 | Conference Paper | IST-REx-ID: 3847 |

Didier F, Henzinger TA, Mateescu M, Wolf V. 2010. SABRE: A tool for the stochastic analysis of biochemical reaction networks. QEST: Quantitative Evaluation of Systems, 193–194.
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2010 | Conference Paper | IST-REx-ID: 3849 |

Bendich P, Edelsbrunner H, Kerber M, Patel A. 2010. Persistent homology under non-uniform error. MFCS: Mathematical Foundations of Computer Science, LNCS, vol. 6281, 12–23.
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2010 | Journal Article | IST-REx-ID: 385 |

Alpichshev Z, Analytis J, Chu J, Fisher I, Chen Y, Shen Z, Fang A, Kapitulnik A. 2010. STM imaging of electronic waves on the surface of Bi2Te3 Topologically protected surface states and hexagonal warping effects. Physical Review Letters. 104(1).
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2010 | Conference Paper | IST-REx-ID: 3850
Berberich E, Halperin D, Kerber M, Pogalnikova R. 2010. Polygonal reconstruction from approximate offsets. EuroCG: European Workshop on Computational Geometry, 12–23.
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2010 | Conference Paper | IST-REx-ID: 3851 |

Chatterjee K, Doyen L. 2010. Energy parity games. ICALP: Automata, Languages and Programming, 37th International Colloquium, LNCS, vol. 6199, 599–610.
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| arXiv
2010 | Conference Paper | IST-REx-ID: 3852 |

Chatterjee K, Majumdar R. 2010. Discounting in games across time scales. GandALF: Games, Automata, Logic, and Formal Verification, EPTCS, vol. 25, 22–29.
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| arXiv
2010 | Conference Paper | IST-REx-ID: 3853 |

Chatterjee K, Doyen L, Edelsbrunner H, Henzinger TA, Rannou P. 2010. Mean-payoff automaton expressions. CONCUR: Concurrency Theory, LNCS, vol. 6269, 269–283.
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2010 | Conference Paper | IST-REx-ID: 3855 |

Chatterjee K, Doyen L, Henzinger TA. 2010. Qualitative analysis of partially-observable Markov Decision Processes. MFCS: Mathematical Foundations of Computer Science, LNCS, vol. 6281, 258–269.
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2010 | Conference Paper | IST-REx-ID: 3856 |

Chatterjee K, Doyen L, Gimbert H, Henzinger TA. 2010. Randomness for free. MFCS: Mathematical Foundations of Computer Science, LNCS, vol. 6281, 246–257.
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2010 | Conference Paper | IST-REx-ID: 3857
Chatterjee K, Henzinger TA. 2010. Probabilistic Automata on infinite words: decidability and undecidability results. ATVA: Automated Technology for Verification and Analysis, LNCS, vol. 6252, 1–16.
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2010 | Conference Paper | IST-REx-ID: 3858 |

Chatterjee K, Doyen L. 2010. The complexity of partial-observation parity games. LPAR: Logic for Programming, Artificial Intelligence, and Reasoning, LNCS, vol. 6397, 1–14.
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2010 | Conference (Editor) | IST-REx-ID: 3859
Chatterjee K, Henzinger TA eds. 2010. Formal modeling and analysis of timed systems, Springer,p.
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2010 | Conference Paper | IST-REx-ID: 3860 |

Chatterjee K, Doyen L, Henzinger TA, Raskin J. 2010. Generalized mean-payoff and energy games. FSTTCS: Foundations of Software Technology and Theoretical Computer Science, LIPIcs, vol. 8, 505–516.
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2010 | Journal Article | IST-REx-ID: 3861 |

Chatterjee K, Henzinger TA, Piterman N. 2010. Strategy logic. Information and Computation. 208(6), 677–693.
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2010 | Journal Article | IST-REx-ID: 3862 |

Chatterjee K, Doyen L, Henzinger TA. 2010. Quantitative languages. ACM Transactions on Computational Logic (TOCL). 11(4), 23.
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2010 | Journal Article | IST-REx-ID: 3863 |

Berwanger D, Chatterjee K, De Wulf M, Doyen L, Henzinger TA. 2010. Strategy construction for parity games with imperfect information. Information and Computation. 208(10), 1206–1220.
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2010 | Conference Paper | IST-REx-ID: 3864 |

Chatterjee K, Henzinger TA, Jobstmann B, Singh R. 2010. Measuring and synthesizing systems in probabilistic environments. CAV: Computer Aided Verification, LNCS, vol. 6174, 380–395.
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2010 | Conference Paper | IST-REx-ID: 3866 |

Bloem R, Chatterjee K, Greimel K, Henzinger TA, Jobstmann B. 2010. Robustness in the presence of liveness. CAV: Computer Aided Verification, LNCS, vol. 6174, 410–424.
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2010 | Journal Article | IST-REx-ID: 3867 |

Chatterjee K, Doyen L, Henzinger TA. 2010. Expressiveness and closure properties for quantitative languages. Logical Methods in Computer Science. 6(3), 1–23.
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2010 | Journal Article | IST-REx-ID: 3868 |

Chatterjee K, De Alfaro L, Majumdar R, Raman V. 2010. Algorithms for game metrics. Logical Methods in Computer Science. 6(3), 1–27.
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2010 | Book | IST-REx-ID: 3899
Edelsbrunner H, Harer J. 2010. Computational Topology: An Introduction, American Mathematical Society, XII, 241p.
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2010 | Journal Article | IST-REx-ID: 3901 |

Bendich P, Edelsbrunner H, Kerber M. 2010. Computing robustness and persistence for images. IEEE Transactions of Visualization and Computer Graphics. 16(6), 1251–1260.
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2010 | Journal Article | IST-REx-ID: 3904 |

Ugelvig LV, Kronauer D, Schrempf A, Heinze J, Cremer S. 2010. Rapid anti-pathogen response in ant societies relies on high genetic diversity. Proceedings of the Royal Society of London Series B Biological Sciences. 277(1695), 2821–2828.
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2010 | Journal Article | IST-REx-ID: 3958
Mohan H, Krumbholz M, Sharma R, Eisele S, Junker A, Sixt MK, Newcombe J, Wekerle H, Hohlfeld R, Lassmann H, Meinl E. 2010. Extracellular matrix in multiple sclerosis lesions: fibrillar collagens, biglycan and decorin are upregulated and associated with infiltrating immune cells. Brain Pathology. 20(5), 966–975.
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2010 | Journal Article | IST-REx-ID: 3959
Schumann K, Lämmermann T, Bruckner M, Legler D, Polleux J, Spatz J, Schuler G, Förster R, Lutz M, Sorokin L, Sixt MK. 2010. Immobilized chemokine fields and soluble chemokine gradients cooperatively shape migration patterns of dendritic cells. Immunity. 32(5), 703–713.
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2010 | Journal Article | IST-REx-ID: 3960 |

Weber M, Sixt MK. 2010. MEK signalling tunes actin treadmilling for interstitial lymphocyte migration. EMBO Journal. 29(17), 2861–2863.
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2010 | Thesis | IST-REx-ID: 3962
Pflicke H. 2010. Dendritic cell migration across basement membranes in the skin. IST Austria.
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2010 | Journal Article | IST-REx-ID: 4157 |

Papusheva E, Heisenberg C-PJ. 2010. Spatial organization of adhesion: force-dependent regulation and function in tissue morphogenesis. EMBO Journal. 29(16), 2753–2768.
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| PubMed | Europe PMC
2010 | Journal Article | IST-REx-ID: 4163
Oteíza P, Koeppen M, Krieg M, Pulgar E, Farias C, Melo C, Preibisch S, Mueller D, Tada M, Hartel S, Heisenberg C-PJ, Concha M. 2010. Planar cell polarity signalling regulates cell adhesion properties in progenitors of the zebrafish laterality organ. Development. 137(20), 3459–3468.
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2010 | Journal Article | IST-REx-ID: 4243 |

Barton NH, Etheridge A, Véber A. 2010. A new model for evolution in a spatial continuum. Electronic Journal of Probability. 15(7), 162–216.
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2010 | Book Chapter | IST-REx-ID: 4339 |

Bergmann J, Danowski P. 2010.Ist Bibliothek 2.0 überhaupt noch relevant? – Eine Einleitung in das Handbuch. In: Handbuch Bibliothek 2.0. , 5–20.
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2010 | Other Publication | IST-REx-ID: 4340 |

Danowski P. 2010. Open bibliographic data, Elsevier,p.
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2010 | Conference Paper | IST-REx-ID: 4341
Danowski P. 2010. Step one: blow up the silo! - Open bibliographic data, the first step towards Linked Open Data. WLIC: World Library and Information Congress, IFLA , .
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2010 | Book (Editor) | IST-REx-ID: 4346 |

Danowski P, Bergmann J eds. 2010. Handbuch Bibliothek 2.0, De Gruyter, 405p.
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2010 | Journal Article | IST-REx-ID: 4358
Guinane C, Ben Zakour N, Tormo Mas M, Weinert L, Lowder B, Cartwright R, Smyth D, Smyth C, Lindsay J, Gould K, Witney A, Hinds J, Bollback JP, Rambaut A, Penades J, Fitzgerald JR. 2010. Evolutionary genomics of Staphylococcus aureus reveals insights into the origin and molecular basis of ruminant host adaptation. Genome Biology and Evolution. 2, 454–466.
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2010 | Conference Paper | IST-REx-ID: 4361 |

Wies T, Zufferey D, Henzinger TA. 2010. Forward analysis of depth-bounded processes. FoSSaCS: Foundations of Software Science and Computation Structures, LNCS, vol. 6014, 94–108.
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2010 | Conference Paper | IST-REx-ID: 4369 |

Nickovic D, Piterman N. 2010. From MTL to deterministic timed automata. FORMATS: Formal Modeling and Analysis of Timed Systems, LNCS, vol. 6246, 152–167.
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2010 | Conference Paper | IST-REx-ID: 4378 |

Kuncak V, Piskac R, Suter P, Wies T. 2010. Building a calculus of data structures. VMCAI: Verification, Model Checking and Abstract Interpretation, LNCS, vol. 5944, 26–44.
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2010 | Journal Article | IST-REx-ID: 4379 |

Jones K, Konrad V, Nickovic D. 2010. Analog property checkers: a DDR2 case study. Formal Methods in System Design. 36(2), 114–130.
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2010 | Conference Paper | IST-REx-ID: 4380 |

Henzinger TA, Tomar A, Singh V, Wies T, Zufferey D. 2010. A marketplace for cloud resources. EMSOFT: Embedded Software , 1–8.
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2010 | Conference Paper | IST-REx-ID: 4381 |

Henzinger TA, Tomar A, Singh V, Wies T, Zufferey D. 2010. FlexPRICE: Flexible provisioning of resources in a cloud environment. CLOUD: Cloud Computing, 83–90.
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2010 | Conference Paper | IST-REx-ID: 4382 |

Guerraoui R, Henzinger TA, Kapalka M, Singh V. 2010. Transactions in the jungle. SPAA: ACM Symposium on Parallel Algorithms and Architectures, 263–272.
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2010 | Conference Paper | IST-REx-ID: 4388 |

Chatterjee K, Henzinger TA, Jobstmann B, Radhakrishna A. 2010. GIST: A solver for probabilistic games. CAV: Computer Aided Verification, LNCS, vol. 6174, 665–669.
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| DOI
| arXiv
2010 | Conference Paper | IST-REx-ID: 4389 |

Doyen L, Henzinger TA, Legay A, Nickovic D. 2010. Robustness of sequential circuits. ACSD: Application of Concurrency to System Design, 77–84.
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2010 | Conference Paper | IST-REx-ID: 4390 |

Cerny P, Radhakrishna A, Zufferey D, Chaudhuri S, Alur R. 2010. Model checking of linearizability of concurrent list implementations. CAV: Computer Aided Verification, LNCS, vol. 6174, 465–479.
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2010 | Conference Paper | IST-REx-ID: 4393 |

Cerny P, Henzinger TA, Radhakrishna A. 2010. Simulation distances. CONCUR: Concurrency Theory, LNCS, vol. 6269, 235–268.
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2010 | Conference Paper | IST-REx-ID: 4396 |

Beyer D, Henzinger TA, Théoduloz G, Zufferey D. 2010. Shape refinement through explicit heap analysis. FASE: Fundamental Approaches To Software Engineering, LNCS, vol. 6013, 263–277.
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2010 | Conference Paper | IST-REx-ID: 10909
Chen C, Freedman D. 2010. Hardness results for homology localization. Proceedings of the 2010 Annual ACM-SIAM Symposium on Discrete Algorithms. SODA: Symposium on Discrete Algorithms, 1594–1604.
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2010 | Conference Paper | IST-REx-ID: 10908 |

Blanc R, Henzinger TA, Hottelier T, Kovács L. 2010. ABC: Algebraic Bound Computation for loops. Logic for Programming, Artificial Intelligence, and Reasoning. LPAR: Conference on Logic for Programming, Artificial Intelligence and ReasoningLNCS vol. 6355, 103–118.
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2009 | Journal Article | IST-REx-ID: 3047
Titapiwatanakun B, Blakeslee J, Bandyopadhyay A, Yang H, Mravec J, Sauer M, Cheng Y, Adamec J, Nagashima A, Geisler M, Sakai T, Friml J, Peer W, Murphy A. 2009. ABCB19 PGP19 stabilises PIN1 in membrane microdomains in Arabidopsis. Plant Journal. 57(1), 27–44.
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2009 | Journal Article | IST-REx-ID: 3049
Pernisová M, Klíma P, Horák J, Válková M, Malbeck J, Souček P, Reichman P, Hoyerová K, Dubová J, Friml J, Zažímalová E, Hejátko J. 2009. Cytokinins modulate auxin induced organogenesis in plants via regulation of the auxin efflux. PNAS. 106(9), 3609–3614.
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2009 | Journal Article | IST-REx-ID: 3051 |

Weijers D, Friml J. 2009. SnapShot: Auxin signaling and transport. Cell. 136(6), 1172–1172.
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| PubMed | Europe PMC
2009 | Journal Article | IST-REx-ID: 3052 |

Vanneste S, Friml J. 2009. Auxin: A trigger for change in plant development. Cell. 136(6), 1005–1016.
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2009 | Journal Article | IST-REx-ID: 3054
Robert H, Friml J. 2009. Auxin and other signals on the move in plants. Nature Chemical Biology. 5(5), 325–332.
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| PubMed | Europe PMC
2009 | Journal Article | IST-REx-ID: 3055
Naramoto S, Sawa S, Koizumi K, Uemura T, Ueda T, Friml J, Nakano A, Fukuda H. 2009. Phosphoinositide-dependent regulation of VAN3 ARF-GAP localization and activity essential for vascular tissue continuity in plants. Development. 136(9), 1529–1538.
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2009 | Journal Article | IST-REx-ID: 3057 |

Petrášek J, Friml J. 2009. Auxin transport routes in plant development. Development. 136(16), 2675–2688.
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2009 | Journal Article | IST-REx-ID: 3058
Mravec J, Skůpa P, Bailly A, Hoyerová K, Křeček P, Bielach A, Petrášek J, Zhang J, Gaykova V, Stierhof Y, Dobrev P, Schwarzerová K, Rolčík J, Seifertová D, Luschnig C, Benková E, Zažímalová E, Geisler M, Friml J. 2009. Subcellular homeostasis of phytohormone auxin is mediated by the ER localized PIN5 transporter. Nature. 459(7250), 1136–1140.
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2009 | Journal Article | IST-REx-ID: 3059
Kleine Vehn J, Huang F, Naramoto S, Zhang J, Michniewicz M, Offringa R, Friml J. 2009. PIN auxin efflux carrier polarity is regulated by PINOID kinase mediated recruitment into GNOM independent trafficking in arabidopsis. Plant Cell. 21(12), 3839–3849.
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2009 | Journal Article | IST-REx-ID: 3061 |

Křeček P, Skůpa P, Libus J, Naramoto S, Tejos R, Friml J, Zažímalová E. 2009. The PIN-FORMED (PIN) protein family of auxin transporters. Genome Biology. 10(12).
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