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6021 Publications


2004 | Conference Paper | IST-REx-ID: 4459
Race checking by context inference
T.A. Henzinger, R. Jhala, R. Majumdar, in:, ACM, 2004, pp. 1–13.
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2004 | Book Chapter | IST-REx-ID: 4461
Extreme model checking
T.A. Henzinger, R. Jhala, R. Majumdar, M. Sanvido, in:, Verification: Theory and Practice, Springer, 2004, pp. 332–358.
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2004 | Conference Paper | IST-REx-ID: 4525
Event-driven programming with logical execution times
A. Ghosal, T.A. Henzinger, C. Kirsch, M. Sanvido, in:, Springer, 2004, pp. 167–170.
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2004 | Conference Paper | IST-REx-ID: 4555
Trading memory for randomness
K. Chatterjee, L. De Alfaro, T.A. Henzinger, in:, IEEE, 2004, pp. 206–217.
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2004 | Journal Article | IST-REx-ID: 4556
Stack size analysis for interrupt-driven programs
K. Chatterjee, D. Ma, R. Majumdar, T. Zhao, T.A. Henzinger, J. Palsberg, Information and Computation 194 (2004) 144–174.
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2004 | Conference Paper | IST-REx-ID: 4558
Quantitative stochastic parity games
K. Chatterjee, M. Jurdziński, T.A. Henzinger, in:, SIAM, 2004, pp. 121–130.
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2004 | Conference Paper | IST-REx-ID: 4577
An eclipse plug-in for model checking
D. Beyer, T.A. Henzinger, R. Jhala, R. Majumdar, in:, IEEE, 2004, pp. 251–255.
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2004 | Conference Paper | IST-REx-ID: 4578
The BLAST query language for software verification
D. Beyer, A. Chlipala, T.A. Henzinger, R. Jhala, R. Majumdar, in:, Springer, 2004, pp. 2–18.
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2004 | Conference Paper | IST-REx-ID: 4581
Generating tests from counterexamples
D. Beyer, A. Chlipala, T.A. Henzinger, R. Jhala, R. Majumdar, in:, IEEE, 2004, pp. 326–335.
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2004 | Conference Paper | IST-REx-ID: 4629
Model checking discounted temporal properties
L. De Alfaro, M. Faella, T.A. Henzinger, R. Majumdar, M. Stoelinga, in:, Springer, 2004, pp. 77–92.
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2004 | Journal Article | IST-REx-ID: 6155
Soluble guanylate cyclases act in neurons exposed to the body fluid to promote C. elegans aggregation behavior
B.H.. Cheung, F. Arellano-Carbajal, I. Rybicki, M. de Bono, Current Biology 14 (2004) 1105–1111.
View | DOI | PubMed | Europe PMC
 

2004 | Book Review | IST-REx-ID: 2636
Function and distribution of glutamate receptors in the central synapses
A. Momiyama, R. Shigemoto, Tanpakushitsu Kakusan Koso Protein Nucleic Acid Enzyme 49 (2004) 287–294.
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2004 | Journal Article | IST-REx-ID: 2638
Immunocytochemical localization of the α1A subunit of the P/Q-type calcium channel in the rat cerebellum
Á. Kulik, K. Nakadate, A. Hagiwara, Y. Fukazawa, R. Luján, H. Saito, N. Suzuki, A. Futatsugi, K. Mikoshiba, M. Frotscher, R. Shigemoto, European Journal of Neuroscience 19 (2004) 2169–2178.
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2004 | Journal Article | IST-REx-ID: 2639
GABAergic basket cells expressing cholecystokinin contain vesicular glutamate transporter type 3 (VGLUT3) in their synaptic terminals in hippocampus and isocortex of the rat
J. Somogyi, A. Baude, Y. Omori, H. Shimizu, S. El Mestikawy, M. Fukaya, R. Shigemoto, M. Watanabe, P. Somogyi, European Journal of Neuroscience 19 (2004) 552–569.
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2004 | Journal Article | IST-REx-ID: 2640
Immunohistochemical localization of Ih channel subunits, HCN1-4, in the rat brain
T. Notomi, R. Shigemoto, Journal of Comparative Neurology 471 (2004) 241–276.
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2004 | Journal Article | IST-REx-ID: 2641
Bidirectional interactions between H-channels and Na+-K + pumps in mesencephalic trigeminal neurons
Y. Kang, T. Notomi, M. Saito, W. Zhang, R. Shigemoto, Journal of Neuroscience 24 (2004) 3694–3702.
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2004 | Journal Article | IST-REx-ID: 2642
Immunolocalization of metabotropic glutamate receptor 1α (mGluR1α) in distinct classes of interneuron in the CA1 region of the rat hippocampus
F. Ferraguti, P. Cobden, M. Pollard, D. Cope, R. Shigemoto, M. Watanabe, P. Somogyi, Hippocampus 14 (2004) 193–215.
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2004 | Journal Article | IST-REx-ID: 2643
Localization of the GABAB receptor 1a/b subunit relative to glutamatergic synapses in the dorsal cochlear nucleus of the rat
R. Luján, R. Shigemoto, Á. Kulik, J. Juíz, Journal of Comparative Neurology 475 (2004) 36–46.
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2004 | Journal Article | IST-REx-ID: 2644
Depression of GABAergic input to identified hippocampal neurons by group III metabotropic glutamate receptors in the rat
N. Kogo, Y. Dalezios, M. Capogna, F. Ferraguti, R. Shigemoto, P. Somogyi, European Journal of Neuroscience 19 (2004) 2727–2740.
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2004 | Journal Article | IST-REx-ID: 2645
HCN2 and HCN1 channels govern the regularity of autonomous pacemaking and synaptic resetting in globus pallidus neurons
S. Chan, R. Shigemoto, J. Mercer, J. Surmeier, Journal of Neuroscience 24 (2004) 9921–9932.
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2004 | Journal Article | IST-REx-ID: 2646
Distribution of metabotropic GABA receptor subunits GABAB1a/b and GABAB2 in the rat hippocampus during prenatal and postnatal development
G. López Bendito, R. Shigemoto, Á. Kulik, I. Vida, A. Fairén, R. Luján, Hippocampus 14 (2004) 836–848.
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2004 | Journal Article | IST-REx-ID: 2706
Magnetic Lieb-Thirring inequalities with optimal dependence on the field strength
L. Erdös, J. Solovej, Journal of Statistical Physics 116 (2004) 475–506.
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2004 | Journal Article | IST-REx-ID: 2707
On the quantum Boltzmann equation
L. Erdös, M. Salmhofer, H. Yau, Journal of Statistical Physics 116 (2004) 367–380.
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2004 | Journal Article | IST-REx-ID: 2741 View | DOI
 

2004 | Journal Article | IST-REx-ID: 2742
Nonlinear Hartree equation as the mean field limit of weakly coupled fermions
A. Elgart, L. Erdös, B. Schlein, H. Yau, Journal de Mathématiques Pures et Appliquées 83 (2004) 1241–1273.
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2004 | Journal Article | IST-REx-ID: 2786
Experimental observation of nonlinear traveling waves in turbulent pipe flow
B. Hof, C. Van Doorne, J. Westerweel, F. Nieuwstadt, H. Faisst, B. Eckhardt, H. Wedin, R. Kersweli, F. Waleffe, Science 305 (2004) 1594–1598.
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2004 | Journal Article | IST-REx-ID: 2787
On the onset of oscillatory convection in molten gallium
B. Hof, A. Juel, L. Zhao, D. Henry, H. Ben Hadid, T. Mullin, Journal of Fluid Mechanics 515 (2004) 391–413.
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2004 | Journal Article | IST-REx-ID: 2997
A PINOID-dependent binary switch in apical-basal PIN polar targeting directs auxin efflux
J. Friml, X. Yang, M. Michniewicz, D. Weijers, A. Quint, O. Tietz, R. Benjamins, P. Ouwerkerk, K. Ljung, G. Sandberg, P. Hooykaas, K. Palme, R. Offringa, Science 306 (2004) 862–865.
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2004 | Journal Article | IST-REx-ID: 2998
The chromatin remodelling complex FACT associates with actively transcribed regions of the Arabidopsis genome
M. Duroux, A. Houben, K. Růžička, J. Friml, K. Grasser, Plant Journal 40 (2004) 660–671.
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2004 | Journal Article | IST-REx-ID: 2999
In vitro culture of Arabidopsis embryos within their ovules
M. Sauer, J. Friml, Plant Journal 40 (2004) 835–843.
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2004 | Book Review | IST-REx-ID: 3142
Control of neuronal phenotype: What targets tell the cell bodies
S. Hippenmeyer, I. Kramer, S. Arber, Trends in Neurosciences 27 (2004) 482–488.
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2004 | Journal Article | IST-REx-ID: 1963
Substrate-induced conformational change in bacterial complex I
A. Mamedova, P. Holt, J. Carroll, L.A. Sazanov, Journal of Biological Chemistry 279 (2004) 23830–23836.
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2004 | Journal Article | IST-REx-ID: 864
Prediction of functional sites by analysis of sequence and structure conservation
A. Panchenko, F. Kondrashov, S. Bryant, Protein Science 13 (2004) 884–892.
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2004 | Journal Article | IST-REx-ID: 870
Bioinformatical assay of human gene morbidity
F. Kondrashov, A. Ogurtsov, A. Kondrashov, Nucleic Acids Research 32 (2004) 1731–1737.
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2004 | Journal Article | IST-REx-ID: 875 View | DOI
 

2004 | Journal Article | IST-REx-ID: 889
Mechanisms and convergence of compensatory evolution in mammalian mitochondrial tRNAs
A. Kern, F. Kondrashov, Nature Genetics 36 (2004) 1207–1212.
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2004 | Journal Article | IST-REx-ID: 898
Positive selection at sites of multiple amino acid replacements since rat-mouse divergence
G. Bazykin, F. Kondrashov, A. Ogurtsov, S. Sunyaev, A. Kondrashov, Nature 429 (2004) 558–562.
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2004 | Journal Article | IST-REx-ID: 902
The functional genomic distribution of protein divergence in two animal phyla: Coevolution, genomic conflict, and constraint
C. Castillo Davis, F. Kondrashov, D. Hartl, R. Kulathinal, Genome Research 14 (2004) 802–811.
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2004 | Journal Article | IST-REx-ID: 1456 | OA
Hodge cohomology of gravitational instantons
T. Hausel, E. Hunsicker, R. Mazzeo, Duke Mathematical Journal 122 (2004) 485–548.
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2004 | Journal Article | IST-REx-ID: 1464 | OA
Generators for the cohomology ring of the moduli space of rank 2 higgs bundles
T. Hausel, M. Thaddeus, Proceedings of the London Mathematical Society 88 (2004) 632–658.
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2004 | Journal Article | IST-REx-ID: 3172
Multiprocessor scheduling implementation of the simultaneous multiple volume SMV navigator method
V. Kolmogorov, T. Nguyen, A. Nuval, P. Spincemaille, M. Prince, R. Zabih, Y. Wang, Magnetic Resonance in Medicine 52 (2004) 362–367.
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2004 | Journal Article | IST-REx-ID: 3173
What energy functions can be minimized via graph cuts?
V. Kolmogorov, R. Zabih, IEEE Transactions on Pattern Analysis and Machine Intelligence 26 (2004) 147–159.
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2004 | Conference Paper | IST-REx-ID: 3177
Spatially coherent clustering using graph cuts
R. Zabih, V. Kolmogorov, in:, IEEE, 2004, pp. 437–444.
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2004 | Journal Article | IST-REx-ID: 3178
An experimental comparison of min-cut/max-flow algorithms for energy minimization in vision
Y. Boykov, V. Kolmogorov, IEEE Transactions on Pattern Analysis and Machine Intelligence 26 (2004) 1124–1137.
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2004 | Conference Paper | IST-REx-ID: 3179
"GrabCut" - Interactive foreground extraction using iterated graph cuts
C. Rother, V. Kolmogorov, A. Blake, in:, ACM, 2004, pp. 309–314.
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2004 | Conference Paper | IST-REx-ID: 3208
Composition of random systems: When two weak make one strong
U. Maurer, K.Z. Pietrzak, in:, Springer, 2004, pp. 410–427.
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2004 | Journal Article | IST-REx-ID: 3419
Probing the energy landscape of the membrane protein bacteriorhodopsin
H.L. Janovjak, J. Struckmeier, M. Hubain, M. Kessler, A. Kedrov, D. Mueller, Structure 12 (2004) 871–879.
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2004 | Journal Article | IST-REx-ID: 3420
Controlled unfolding and refolding of a single sodium/proton antiporter using atomic force microscopy
A. Kedrov, C. Ziegler, H.L. Janovjak, W. Kühlbrandt, D. Mueller, Journal of Molecular Biology 340 (2004) 1143–1152.
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2004 | Book Chapter | IST-REx-ID: 3574
Biological applications of computational topology
H. Edelsbrunner, in:, Handbook of Discrete and Computational Geometry, CRC Press, 2004, pp. 1395–1412.
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2004 | Book Chapter | IST-REx-ID: 3575
Jacobi sets of multiple Morse functions
H. Edelsbrunner, J. Harer, in:, Foundations of Computational Mathematics, Springer, 2004, pp. 37–57.
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2004 | Book Review | IST-REx-ID: 3595
Genome size: Does bigger mean worse?
B. Charlesworth, N.H. Barton, Current Biology 14 (2004) R233–R235.
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2004 | Journal Article | IST-REx-ID: 3614
Effects of allele frequency changes on variance components under a general model of epistasis
N.H. Barton, M. Turelli, Evolution; International Journal of Organic Evolution 58 (2004) 2111–2132.
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2004 | Journal Article | IST-REx-ID: 3615 View | DOI
 

2004 | Book Review | IST-REx-ID: 3616
Speciation: Why, how, where and when?
N.H. Barton, Current Biology 14 (2004) R603–R604.
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2004 | Journal Article | IST-REx-ID: 3617
The effect of selection on genealogies
N.H. Barton, A. Etheridge, Genetics 166 (2004) 1115–1131.
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2004 | Conference Paper | IST-REx-ID: 3688
Document capture using stereo vision
A. Ulges, C. Lampert, T. Breuel, in:, ACM, 2004, pp. 198–200.
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2004 | Journal Article | IST-REx-ID: 3805
Interneuron Diversity series: Fast in, fast out--temporal and spatial signal processing in hippocampal interneurons
P.M. Jonas, J. Bischofberger, D. Fricker, R. Miles, Trends in Neurosciences 27 (2004) 30–40.
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2004 | Journal Article | IST-REx-ID: 3807 | OA
Kinetics of Mg(2+) unblock of NMDA receptors: implications for spike-timing dependent synaptic plasticity
B. Kampa, J. Clements, P.M. Jonas, G. Stuart, Journal of Physiology 556 (2004) 337–45.
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2004 | Journal Article | IST-REx-ID: 3809
Enhanced synaptic plasticity in newly generated granule cells of the adult hippocampus
C. Schmidt Hieber, P.M. Jonas, J. Bischofberger, Nature 429 (2004) 184–7.
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2004 | Journal Article | IST-REx-ID: 3810
Functional conversion between A-type and delayed rectifier K+ channels by membrane lipids
D. Oliver, C. Lien, M. Soom, T. Baukrowitz, P.M. Jonas, B. Fakler, Science 304 (2004) 265–70.
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2004 | Conference Paper | IST-REx-ID: 3894
On Nash equilibria in stochastic games
K. Chatterjee, R. Majumdar, M. Jurdziński, in:, Springer, 2004, pp. 26–40.
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2004 | Conference Paper | IST-REx-ID: 3895
Games with secure equilibria
K. Chatterjee, T.A. Henzinger, M. Jurdziński, in:, IEEE, 2004, pp. 160–169.
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2004 | Book Chapter | IST-REx-ID: 3587
Gastrulation in zebrafish
F. Ulrich, C.-P.J. Heisenberg, in:, V. Korzh, Z. Gong (Eds.), Fish Development and Genetics : The Zebrafish and Medaka Models, World Scientific Publishing, 2004, pp. 39–86.
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2004 | Journal Article | IST-REx-ID: 4172
Gastrulation dynamics: cells move into focus
J. Montero, C.-P.J. Heisenberg, Trends in Cell Biology 14 (2004) 620–627.
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2004 | Journal Article | IST-REx-ID: 4238
Dynamic response of cancer under the influence of immunological activity and therapy
H. de Vladar, J. González, Journal of Theoretical Biology 227 (2004) 335–348.
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2004 | Journal Article | IST-REx-ID: 4224
Dpp gradient formation by dynamin-dependent endocytosis: receptor trafficking and the diffusion model
K. Kruse, P. Pantazis, M.T. Bollenbach, F. Julicher, M. Gonzalez Gaitan, Development 131 (2004) 4843–4856.
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2004 | Thesis | IST-REx-ID: 4236
Métodos no lineales y sus aplicaciones en dinámicas aleatorias de poblaciones celulares
H. de Vladar, Métodos No Lineales y Sus Aplicaciones En Dinámicas Aleatorias de Poblaciones Celulares, Centro de estudios avazados, IVIC, 2004.
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2004 | Thesis | IST-REx-ID: 4424
Program verification by lazy abstraction
R. Jhala, Program Verification by Lazy Abstraction, University of California, Berkeley, 2004.
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2004 | Journal Article | IST-REx-ID: 8517
A limit shape theorem for periodic stochastic dispersion
D. Dolgopyat, V. Kaloshin, L. Koralov, Communications on Pure and Applied Mathematics 57 (2004) 1127–1158.
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2004 | Journal Article | IST-REx-ID: 8518
Sample path properties of the stochastic flows
L. Koralov, V. Kaloshin, D. Dolgopyat, The Annals of Probability 32 (2004) 1–27.
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2003 | Journal Article | IST-REx-ID: 205
Counting rational points on cubic and quartic surfaces
T.D. Browning, Acta Arithmetica 108 (2003) 275–295.
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2003 | Journal Article | IST-REx-ID: 206
A note on the distribution of rational points on threefolds
T.D. Browning, Quarterly Journal of Mathematics 54 (2003) 33–39.
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2003 | Journal Article | IST-REx-ID: 207
Sums of four biquadrates
T.D. Browning, Mathematical Proceedings of the Cambridge Philosophical Society 134 (2003) 385–395.
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2003 | Journal Article | IST-REx-ID: 208
Counting rational points on diagonal quadratic surfaces
T.D. Browning, Quarterly Journal of Mathematics 54 (2003) 11–31.
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2003 | Conference Paper | IST-REx-ID: 2337 | OA
Bose-Einstein condensation of dilute gases in traps
É. Lieb, R. Seiringer, in:, Y. Karpeshina, R. Weikard, Y. Zeng (Eds.), American Mathematical Society, 2003, pp. 239–250.
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2003 | Journal Article | IST-REx-ID: 2354 | OA
Ground state asymptotics of a dilute, rotating gas
R. Seiringer, Journal of Physics A: Mathematical and Theoretical 36 (2003) 9755–9778.
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2003 | Journal Article | IST-REx-ID: 2357 | OA
Poincaré inequalities in punctured domains
É. Lieb, R. Seiringer, J. Yngvason, Annals of Mathematics 158 (2003) 1067–1080.
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2003 | Journal Article | IST-REx-ID: 2358 | OA
One-dimensional Bosons in three-dimensional traps
É. Lieb, R. Seiringer, J. Yngvason, Physical Review Letters 91 (2003) 1504011–1504014.
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2003 | Thesis | IST-REx-ID: 2414
On k-Sets and Their Applications
U. Wagner, On K-Sets and Their Applications, ETH Zurich, 2003.
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2003 | Conference Paper | IST-REx-ID: 2422
On the rectilinear crossing number of complete graphs
U. Wagner, in:, SIAM, 2003, pp. 583–588.
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2003 | Conference Paper | IST-REx-ID: 2423
New constructions of weak epsilon-nets
J. Matoušek, U. Wagner, in:, ACM, 2003, pp. 129–135.
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2003 | Conference Paper | IST-REx-ID: 2424 View | DOI
 

2003 | Journal Article | IST-REx-ID: 3917
Zwischen Hochzeitsflug und Brudermord: reproduktive Taktiken bei Ameisenmännchen
S. Cremer, J. Heinze, Blick in Die Wissenschaft 12 (2003) 32–36.
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2003 | Journal Article | IST-REx-ID: 3921
Live and let die: Why fighter males of the ant Cardiocondyla kill each other but tolerate their winged rivals
C. Anderson, S. Cremer, J. Heinze, Behavioral Ecology 14 (2003) 54–62.
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2003 | Journal Article | IST-REx-ID: 3922
Stress grows wings: Environmental induction of winged dispersal males in Cardiocondyla ants
S. Cremer, J. Heinze, Current Biology 13 (2003) 219–223.
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2003 | Book Chapter | IST-REx-ID: 3991
Area and perimeter derivatives of a union of disks
H. Cheng, H. Edelsbrunner, in:, Computer Science in Perspective: Essays Dedicated to Thomas Ottmann, Springer, 2003, pp. 88–97.
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2003 | Journal Article | IST-REx-ID: 3992
The weighted-volume derivative of a space-filling diagram
H. Edelsbrunner, P. Koehl, PNAS 100 (2003) 2203–2208.
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2003 | Journal Article | IST-REx-ID: 3993
Hierarchical Morse-Smale complexes for piecewise linear 2-manifolds
H. Edelsbrunner, J. Harer, A. Zomorodian, Discrete & Computational Geometry 30 (2003) 87–107.
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2003 | Journal Article | IST-REx-ID: 3994
Area, perimeter and derivatives of a skin curve
H. Cheng, H. Edelsbrunner, Computational Geometry: Theory and Applications 26 (2003) 173–192.
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2003 | Conference Paper | IST-REx-ID: 3997
A multi-resolution data structure for two-dimensional Morse-Smale functions
P. Bremer, H. Edelsbrunner, B. Hamann, V. Pascucci, in:, IEEE, 2003, pp. 139–146.
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2003 | Conference Paper | IST-REx-ID: 3999
Relaxed scheduling in dynamic skin triangulation
H. Edelsbrunner, A. Üngör, in:, Springer, 2003, pp. 135–151.
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2003 | Journal Article | IST-REx-ID: 4254
Accumulating postzygotic isolation genes in parapatry: a new twist on chromosomal speciation
A. Navarro, N.H. Barton, Evolution; International Journal of Organic Evolution 57 (2003) 447–459.
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2003 | Journal Article | IST-REx-ID: 4255 View | DOI
 

2003 | Book Review | IST-REx-ID: 4256
The erratic path towards complexity
N.H. Barton, W. Zuidema, Current Biology 13 (2003) R649–R651.
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2003 | Journal Article | IST-REx-ID: 4257
The effects of genetic and geographic structure on neutral variation
B. Charlesworth, D. Charlesworth, N.H. Barton, Annual Review of Ecology and Systematics 34 (2003) 99–125.
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2003 | Journal Article | IST-REx-ID: 4338
On the maintenance of reproductive isolation in a mosaic hybrid zone between the toads Bombina bombina and B. variegata
T. Vines, S.C. Kohler, M. Thiel, I. Ghira, T.R. Sands, C. Maccallum, N.H. Barton, B. Nürnberger, Evolution; International Journal of Organic Evolution 57 (2003) 1876–1888.
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2003 | Journal Article | IST-REx-ID: 4348
Stochastic mapping of morphological characters
J. Huelsenbeck, R. Nielsen, J.P. Bollback, Systematic Biology 52 (2003) 131–58.
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2003 | Journal Article | IST-REx-ID: 4350
True and false gharials: A nuclear gene phylogeny of crocodylia
J. Harshman, C. Huddleston, J.P. Bollback, T. Parsons, M. Braun, Systematic Biology 52 (2003) 386–402.
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2003 | Journal Article | IST-REx-ID: 4460
From pre-historic to post-modern symbolic model checking
T.A. Henzinger, O. Kupferman, S. Qadeer, Formal Methods in System Design 23 (2003) 303–327.
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2003 | Conference Paper | IST-REx-ID: 4462
Counterexample-guided control
T.A. Henzinger, R. Jhala, R. Majumdar, in:, Springer, 2003, pp. 886–902.
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