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6112 Publications
2015 | Technical Report | IST-REx-ID: 5444 |

Reconstructing robust phylogenies of metastatic cancers
J. Reiter, A. Makohon-Moore, J. Gerold, I. Bozic, K. Chatterjee, C. Iacobuzio-Donahue, B. Vogelstein, M. Nowak, Reconstructing Robust Phylogenies of Metastatic Cancers, IST Austria, 2015.
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J. Reiter, A. Makohon-Moore, J. Gerold, I. Bozic, K. Chatterjee, C. Iacobuzio-Donahue, B. Vogelstein, M. Nowak, Reconstructing Robust Phylogenies of Metastatic Cancers, IST Austria, 2015.
2015 | Research Data | IST-REx-ID: 5549 |

Experimental part of CAV 2015 publication: Counterexample Explanation by Learning Small Strategies in Markov Decision Processes
A. Fellner, (2015).
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A. Fellner, (2015).
2015 | Conference Paper | IST-REx-ID: 1603 |

Counterexample explanation by learning small strategies in Markov decision processes
T. Brázdil, K. Chatterjee, M. Chmelik, A. Fellner, J. Kretinsky, in:, Springer, 2015, pp. 158–177.
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T. Brázdil, K. Chatterjee, M. Chmelik, A. Fellner, J. Kretinsky, in:, Springer, 2015, pp. 158–177.
2015 | Journal Article | IST-REx-ID: 5749 |

Adaptation to Parasites and Costs of Parasite Resistance in Mutator and Nonmutator Bacteria
S. Wielgoss, T. Bergmiller, A.M. Bischofberger, A.R. Hall, Molecular Biology and Evolution 33 (2015) 770–782.
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S. Wielgoss, T. Bergmiller, A.M. Bischofberger, A.R. Hall, Molecular Biology and Evolution 33 (2015) 770–782.
2015 | Journal Article | IST-REx-ID: 5804
From prima quadraginta octant to lattice sphere through primitive integer operations
R. Biswas, P. Bhowmick, Theoretical Computer Science 624 (2015) 56–72.
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| DOI
R. Biswas, P. Bhowmick, Theoretical Computer Science 624 (2015) 56–72.
2015 | Journal Article | IST-REx-ID: 5807
On different topological classes of spherical geodesic paths and circles inZ3
R. Biswas, P. Bhowmick, Theoretical Computer Science 605 (2015) 146–163.
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| DOI
R. Biswas, P. Bhowmick, Theoretical Computer Science 605 (2015) 146–163.
2015 | Journal Article | IST-REx-ID: 5808
Layer the sphere
R. Biswas, P. Bhowmick, The Visual Computer 31 (2015) 787–797.
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| DOI
R. Biswas, P. Bhowmick, The Visual Computer 31 (2015) 787–797.
2015 | Journal Article | IST-REx-ID: 1939
Erratum to: Excitation spectrum of interacting bosons in the Mean-Field Infinite-Volume limit
J. Dereziński, M.M. Napiórkowski, Annales Henri Poincare 16 (2015) 1709–1711.
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J. Dereziński, M.M. Napiórkowski, Annales Henri Poincare 16 (2015) 1709–1711.
2015 | Journal Article | IST-REx-ID: 594
Structural basis of transcription initiation by RNA polymerase II
S. Sainsbury, C. Bernecky, P. Cramer, Nature Reviews Molecular Cell Biology 16 (2015) 129–143.
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S. Sainsbury, C. Bernecky, P. Cramer, Nature Reviews Molecular Cell Biology 16 (2015) 129–143.
2015 | Technical Report | IST-REx-ID: 5441 |

Algorithms for algebraic path properties in concurrent systems of constant treewidth components
K. Chatterjee, R. Ibsen-Jensen, A.K. Goharshady, A. Pavlogiannis, Algorithms for Algebraic Path Properties in Concurrent Systems of Constant Treewidth Components, IST Austria, 2015.
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K. Chatterjee, R. Ibsen-Jensen, A.K. Goharshady, A. Pavlogiannis, Algorithms for Algebraic Path Properties in Concurrent Systems of Constant Treewidth Components, IST Austria, 2015.
2015 | Technical Report | IST-REx-ID: 5442 |

Algorithms for algebraic path properties in concurrent systems of constant treewidth components
1 Anonymous, 2 Anonymous, 3 Anonymous, 4 Anonymous, Algorithms for Algebraic Path Properties in Concurrent Systems of Constant Treewidth Components, IST Austria, 2015.
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1 Anonymous, 2 Anonymous, 3 Anonymous, 4 Anonymous, Algorithms for Algebraic Path Properties in Concurrent Systems of Constant Treewidth Components, IST Austria, 2015.
2015 | Journal Article | IST-REx-ID: 6118 |

Environmental CO2 inhibits Caenorhabditis elegans egg-laying by modulating olfactory neurons and evokes widespread changes in neural activity
L.A. Fenk, M. de Bono, Proceedings of the National Academy of Sciences 112 (2015) E3525–E3534.
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| PubMed | Europe PMC
L.A. Fenk, M. de Bono, Proceedings of the National Academy of Sciences 112 (2015) E3525–E3534.
2015 | Journal Article | IST-REx-ID: 6120 |

Decoding a neural circuit controlling global animal state in C. elegans
P. Laurent, Z. Soltesz, G.M. Nelson, C. Chen, F. Arellano-Carbajal, E. Levy, M. de Bono, ELife 4 (2015).
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| PubMed | Europe PMC
P. Laurent, Z. Soltesz, G.M. Nelson, C. Chen, F. Arellano-Carbajal, E. Levy, M. de Bono, ELife 4 (2015).
2015 | Conference Paper | IST-REx-ID: 1511 |

On generalized Heawood inequalities for manifolds: A Van Kampen–Flores-type nonembeddability result
X. Goaoc, I. Mabillard, P. Paták, Z. Patakova, M. Tancer, U. Wagner, in:, Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2015, pp. 476–490.
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X. Goaoc, I. Mabillard, P. Paták, Z. Patakova, M. Tancer, U. Wagner, in:, Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2015, pp. 476–490.
2015 | Journal Article | IST-REx-ID: 1619 |

Quantifying the determinants of evolutionary dynamics leading to drug resistance
G. Chevereau, M. Lukacisinova, T. Batur, A. Guvenek, D. Ayhan, E. Toprak, M.T. Bollenbach, PLoS Biology 13 (2015).
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G. Chevereau, M. Lukacisinova, T. Batur, A. Guvenek, D. Ayhan, E. Toprak, M.T. Bollenbach, PLoS Biology 13 (2015).
2015 | Conference Paper | IST-REx-ID: 1637 |

The complexity of general-valued CSPs
V. Kolmogorov, A. Krokhin, M. Rolinek, in:, IEEE, 2015, pp. 1246–1258.
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V. Kolmogorov, A. Krokhin, M. Rolinek, in:, IEEE, 2015, pp. 1246–1258.
2015 | Journal Article | IST-REx-ID: 6507
Structural basis for collagen recognition by the immune receptor OSCAR
L. Zhou, J.M. Hinerman, M. Blaszczyk, J.L.C. Miller, D.G. Conrady, A.D. Barrow, D.Y. Chirgadze, D. Bihan, R.W. Farndale, A.B. Herr, Blood 127 (2015) 529–537.
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| DOI
| PubMed | Europe PMC
L. Zhou, J.M. Hinerman, M. Blaszczyk, J.L.C. Miller, D.G. Conrady, A.D. Barrow, D.Y. Chirgadze, D. Bihan, R.W. Farndale, A.B. Herr, Blood 127 (2015) 529–537.
2015 | Journal Article | IST-REx-ID: 1576 |

Stochastic proofreading mechanism alleviates crosstalk in transcriptional regulation
S.A. Cepeda Humerez, G. Rieckh, G. Tkačik, Physical Review Letters 115 (2015).
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S.A. Cepeda Humerez, G. Rieckh, G. Tkačik, Physical Review Letters 115 (2015).
2015 | Journal Article | IST-REx-ID: 6736 |

Scaling exponent of list decoders with applications to polar codes
M. Mondelli, H. Hassani, R. Urbanke, IEEE Transactions on Information Theory 61 (2015) 4838–4851.
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| arXiv
M. Mondelli, H. Hassani, R. Urbanke, IEEE Transactions on Information Theory 61 (2015) 4838–4851.
2015 | Journal Article | IST-REx-ID: 6737 |

Achieving Marton’s region for broadcast channels using polar codes
M. Mondelli, H. Hassani, I. Sason, R. Urbanke, IEEE Transactions on Information Theory 61 (2015) 783–800.
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| arXiv
M. Mondelli, H. Hassani, I. Sason, R. Urbanke, IEEE Transactions on Information Theory 61 (2015) 783–800.
2015 | Journal Article | IST-REx-ID: 7070
Magnetization of underdoped YBa2Cu3Oy above the irreversibility field
J.F. Yu, B.J. Ramshaw, I. Kokanović, K.A. Modic, N. Harrison, J. Day, R. Liang, W.N. Hardy, D.A. Bonn, A. McCollam, S.R. Julian, J.R. Cooper, Physical Review B 92 (2015).
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J.F. Yu, B.J. Ramshaw, I. Kokanović, K.A. Modic, N. Harrison, J. Day, R. Liang, W.N. Hardy, D.A. Bonn, A. McCollam, S.R. Julian, J.R. Cooper, Physical Review B 92 (2015).
2015 | Journal Article | IST-REx-ID: 7739 |

Replicated analysis of the genetic architecture of quantitative traits in two wild great tit populations
A.W. Santure, J. Poissant, I. De Cauwer, K. van Oers, M.R. Robinson, J.L. Quinn, M.A.M. Groenen, M.E. Visser, B.C. Sheldon, J. Slate, Molecular Ecology 24 (2015) 6148–6162.
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A.W. Santure, J. Poissant, I. De Cauwer, K. van Oers, M.R. Robinson, J.L. Quinn, M.A.M. Groenen, M.E. Visser, B.C. Sheldon, J. Slate, Molecular Ecology 24 (2015) 6148–6162.
2015 | Journal Article | IST-REx-ID: 7741 |

Social genetic and social environment effects on parental and helper care in a cooperatively breeding bird
M.J. Adams, M.R. Robinson, M.-E. Mannarelli, B.J. Hatchwell, Proceedings of the Royal Society B: Biological Sciences 282 (2015).
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| PubMed | Europe PMC
M.J. Adams, M.R. Robinson, M.-E. Mannarelli, B.J. Hatchwell, Proceedings of the Royal Society B: Biological Sciences 282 (2015).
2015 | Journal Article | IST-REx-ID: 7742
Population genetic differentiation of height and body mass index across Europe
M.R. Robinson, G. Hemani, C. Medina-Gomez, M. Mezzavilla, T. Esko, K. Shakhbazov, J.E. Powell, A. Vinkhuyzen, S.I. Berndt, S. Gustafsson, A.E. Justice, B. Kahali, A.E. Locke, T.H. Pers, S. Vedantam, A.R. Wood, W. van Rheenen, O.A. Andreassen, P. Gasparini, A. Metspalu, L.H. van den Berg, J.H. Veldink, F. Rivadeneira, T.M. Werge, G.R. Abecasis, D.I. Boomsma, D.I. Chasman, E.J.C. de Geus, T.M. Frayling, J.N. Hirschhorn, J.J. Hottenga, E. Ingelsson, R.J.F. Loos, P.K.E. Magnusson, N.G. Martin, G.W. Montgomery, K.E. North, N.L. Pedersen, T.D. Spector, E.K. Speliotes, M.E. Goddard, J. Yang, P.M. Visscher, Nature Genetics 47 (2015) 1357–1362.
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M.R. Robinson, G. Hemani, C. Medina-Gomez, M. Mezzavilla, T. Esko, K. Shakhbazov, J.E. Powell, A. Vinkhuyzen, S.I. Berndt, S. Gustafsson, A.E. Justice, B. Kahali, A.E. Locke, T.H. Pers, S. Vedantam, A.R. Wood, W. van Rheenen, O.A. Andreassen, P. Gasparini, A. Metspalu, L.H. van den Berg, J.H. Veldink, F. Rivadeneira, T.M. Werge, G.R. Abecasis, D.I. Boomsma, D.I. Chasman, E.J.C. de Geus, T.M. Frayling, J.N. Hirschhorn, J.J. Hottenga, E. Ingelsson, R.J.F. Loos, P.K.E. Magnusson, N.G. Martin, G.W. Montgomery, K.E. North, N.L. Pedersen, T.D. Spector, E.K. Speliotes, M.E. Goddard, J. Yang, P.M. Visscher, Nature Genetics 47 (2015) 1357–1362.
2015 | Conference Paper | IST-REx-ID: 776
The SprayList: A scalable relaxed priority queue
D.-A. Alistarh, J. Kopinsky, J. Li, N. Shavit, in:, ACM, 2015, pp. 11–20.
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D.-A. Alistarh, J. Kopinsky, J. Li, N. Shavit, in:, ACM, 2015, pp. 11–20.
2015 | Journal Article | IST-REx-ID: 7765
The principle of independent bond-level response: Tuning by pruning to exploit disorder for global behavior
C.P. Goodrich, A.J. Liu, S.R. Nagel, Physical Review Letters 114 (2015).
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C.P. Goodrich, A.J. Liu, S.R. Nagel, Physical Review Letters 114 (2015).
2015 | Journal Article | IST-REx-ID: 7766
Disordered surface vibrations in jammed sphere packings
D.M. Sussman, C.P. Goodrich, A.J. Liu, S.R. Nagel, Soft Matter 11 (2015) 2745–2751.
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D.M. Sussman, C.P. Goodrich, A.J. Liu, S.R. Nagel, Soft Matter 11 (2015) 2745–2751.
2015 | Journal Article | IST-REx-ID: 7767
Collective dynamics of soft active particles
R. van Drongelen, A. Pal, C.P. Goodrich, T. Idema, Physical Review E 91 (2015).
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R. van Drongelen, A. Pal, C.P. Goodrich, T. Idema, Physical Review E 91 (2015).
2015 | Conference Paper | IST-REx-ID: 777
Streaming min-max hypergraph partitioning
D.-A. Alistarh, J. Iglesias, M. Vojnović, in:, Neural Information Processing Systems, 2015, pp. 1900–1908.
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D.-A. Alistarh, J. Iglesias, M. Vojnović, in:, Neural Information Processing Systems, 2015, pp. 1900–1908.
2015 | Preprint | IST-REx-ID: 7779 |

Unearthing the anticrystal: Criticality in the linear response of disordered solids
C.P. Goodrich, ArXiv:1510.08820 (2015).
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| arXiv
C.P. Goodrich, ArXiv:1510.08820 (2015).
2015 | Conference Paper | IST-REx-ID: 778 |

Inherent limitations of hybrid transactional memory
D.-A. Alistarh, J. Kopinsky, P. Kuznetsov, S. Ravi, N. Shavit, in:, Springer, 2015, pp. 185–199.
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| arXiv
D.-A. Alistarh, J. Kopinsky, P. Kuznetsov, S. Ravi, N. Shavit, in:, Springer, 2015, pp. 185–199.
2015 | Conference Paper | IST-REx-ID: 779
ThreadScan: Automatic and scalable memory reclamation
D.-A. Alistarh, A. Matveev, W. Leiserson, N. Shavit, in:, ACM, 2015, pp. 123–132.
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D.-A. Alistarh, A. Matveev, W. Leiserson, N. Shavit, in:, ACM, 2015, pp. 123–132.
2015 | Preprint | IST-REx-ID: 8183 |

Eliminating higher-multiplicity intersections, III. Codimension 2
S. Avvakumov, I. Mabillard, A. Skopenkov, U. Wagner, ArXiv (n.d.).
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| arXiv
S. Avvakumov, I. Mabillard, A. Skopenkov, U. Wagner, ArXiv (n.d.).
2015 | Journal Article | IST-REx-ID: 8242
Generation of recombinant FcεRIα of dog, cat and horse for component-resolved allergy diagnosis in veterinary patients
L. Einhorn, J. Singer, M. Muhr, A. Schoos, K. Oida, J. Singer, L. Panakova, K. Manzano-Szalai, E. Jensen-Jarolim, Journal of Allergy and Clinical Immunology 135 (2015).
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| DOI
L. Einhorn, J. Singer, M. Muhr, A. Schoos, K. Oida, J. Singer, L. Panakova, K. Manzano-Szalai, E. Jensen-Jarolim, Journal of Allergy and Clinical Immunology 135 (2015).
2015 | Journal Article | IST-REx-ID: 1602 |

Faster algorithms for algebraic path properties in recursive state machines with constant treewidth
K. Chatterjee, R. Ibsen-Jensen, A. Pavlogiannis, P. Goyal, ACM SIGPLAN Notices 50 (2015) 97–109.
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| arXiv
K. Chatterjee, R. Ibsen-Jensen, A. Pavlogiannis, P. Goyal, ACM SIGPLAN Notices 50 (2015) 97–109.
2015 | Journal Article | IST-REx-ID: 1604
Quantitative interprocedural analysis
K. Chatterjee, A. Pavlogiannis, Y. Velner, Proceedings of the 42nd Annual ACM SIGPLAN-SIGACT 50 (2015) 539–551.
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K. Chatterjee, A. Pavlogiannis, Y. Velner, Proceedings of the 42nd Annual ACM SIGPLAN-SIGACT 50 (2015) 539–551.
2015 | Conference Paper | IST-REx-ID: 1607 |

Faster algorithms for quantitative verification in constant treewidth graphs
K. Chatterjee, R. Ibsen-Jensen, A. Pavlogiannis, in:, Springer, 2015, pp. 140–157.
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K. Chatterjee, R. Ibsen-Jensen, A. Pavlogiannis, in:, Springer, 2015, pp. 140–157.
2015 | Conference Paper | IST-REx-ID: 1714
A framework for automated competitive analysis of on-line scheduling of firm-deadline tasks
K. Chatterjee, A. Pavlogiannis, A. Kößler, U. Schmid, in:, Real-Time Systems Symposium, IEEE, 2015, pp. 118–127.
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K. Chatterjee, A. Pavlogiannis, A. Kößler, U. Schmid, in:, Real-Time Systems Symposium, IEEE, 2015, pp. 118–127.
2015 | Journal Article | IST-REx-ID: 832
Real time analysis of lateral root organogenesis in arabidopsis
P. Marhavý, E. Benková, Bio-Protocol 5 (2015).
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| DOI
P. Marhavý, E. Benková, Bio-Protocol 5 (2015).
2015 | Journal Article | IST-REx-ID: 8456
Observing the overall rocking motion of a protein in a crystal
P. Ma, Y. Xue, N. Coquelle, J.D. Haller, T. Yuwen, I. Ayala, O. Mikhailovskii, D. Willbold, J.-P. Colletier, N.R. Skrynnikov, P. Schanda, Nature Communications 6 (2015).
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| DOI
P. Ma, Y. Xue, N. Coquelle, J.D. Haller, T. Yuwen, I. Ayala, O. Mikhailovskii, D. Willbold, J.-P. Colletier, N.R. Skrynnikov, P. Schanda, Nature Communications 6 (2015).
2015 | Journal Article | IST-REx-ID: 8457
Conformational exchange processes in biological systems: Detection by solid-state NMR
P. Ma, P. Schanda, EMagRes 4 (2015) 699–708.
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| DOI
P. Ma, P. Schanda, EMagRes 4 (2015) 699–708.
2015 | Journal Article | IST-REx-ID: 848
A model of substitution trajectories in sequence space and long-term protein evolution
D. Usmanova, L. Ferretti, I. Povolotskaya, P. Vlasov, F. Kondrashov, Molecular Biology and Evolution 32 (2015) 542–554.
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D. Usmanova, L. Ferretti, I. Povolotskaya, P. Vlasov, F. Kondrashov, Molecular Biology and Evolution 32 (2015) 542–554.
2015 | Journal Article | IST-REx-ID: 8495
A note on micro-instability for Hamiltonian systems close to integrable
A. Bounemoura, V. Kaloshin, Proceedings of the American Mathematical Society 144 (2015) 1553–1560.
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A. Bounemoura, V. Kaloshin, Proceedings of the American Mathematical Society 144 (2015) 1553–1560.
2015 | Journal Article | IST-REx-ID: 8498
Arnold diffusion for smooth convex systems of two and a half degrees of freedom
V. Kaloshin, K. Zhang, Nonlinearity 28 (2015) 2699–2720.
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| DOI
V. Kaloshin, K. Zhang, Nonlinearity 28 (2015) 2699–2720.
2015 | Journal Article | IST-REx-ID: 8499
Growth of Sobolev norms in the cubic defocusing nonlinear Schrödinger equation
M. Guardia, V. Kaloshin, Journal of the European Mathematical Society 17 (2015) 71–149.
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| DOI
M. Guardia, V. Kaloshin, Journal of the European Mathematical Society 17 (2015) 71–149.
2015 | Journal Article | IST-REx-ID: 981 |

Dirac mass generation from crystal symmetry breaking on the surfaces of topological crystalline insulators
I. Zeljkovic, Y. Okada, M. Serbyn, R. Sankar, D. Walkup, W. Zhou, J. Liu, G. Chang, Y. Wang, M. Hasan, F. Chou, H. Lin, A. Bansil, L. Fu, V. Madhavan, Nature Materials 14 (2015) 318–324.
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I. Zeljkovic, Y. Okada, M. Serbyn, R. Sankar, D. Walkup, W. Zhou, J. Liu, G. Chang, Y. Wang, M. Hasan, F. Chou, H. Lin, A. Bansil, L. Fu, V. Madhavan, Nature Materials 14 (2015) 318–324.
2015 | Journal Article | IST-REx-ID: 982 |

Criterion for many-body localization-delocalization phase transition
M. Serbyn, Z. Papić, D. Abanin, Physical Review X 5 (2015).
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M. Serbyn, Z. Papić, D. Abanin, Physical Review X 5 (2015).
2015 | Journal Article | IST-REx-ID: 99 |

Parity lifetime of bound states in a proximitized semiconductor nanowire
A.P. Higginbotham, S.M. Albrecht, G. Kiršanskas, W. Chang, F. Kuemmeth, P. Krogstrup, T. Jespersen, J. Nygård, K. Flensberg, C. Marcus, Nature Physics 11 (2015) 1017–1021.
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| DOI
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| arXiv
A.P. Higginbotham, S.M. Albrecht, G. Kiršanskas, W. Chang, F. Kuemmeth, P. Krogstrup, T. Jespersen, J. Nygård, K. Flensberg, C. Marcus, Nature Physics 11 (2015) 1017–1021.
2015 | Journal Article | IST-REx-ID: 1537 |

Cortical contractility triggers a stochastic switch to fast amoeboid cell motility
V. Ruprecht, S. Wieser, A. Callan Jones, M. Smutny, H. Morita, K. Sako, V. Barone, M. Ritsch Marte, M.K. Sixt, R. Voituriez, C.-P.J. Heisenberg, Cell 160 (2015) 673–685.
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V. Ruprecht, S. Wieser, A. Callan Jones, M. Smutny, H. Morita, K. Sako, V. Barone, M. Ritsch Marte, M.K. Sixt, R. Voituriez, C.-P.J. Heisenberg, Cell 160 (2015) 673–685.
2015 | Journal Article | IST-REx-ID: 7456
Solvothermal synthesis and controlled self-assembly of monodisperse titanium-based perovskite colloidal nanocrystals
D. Caruntu, T. Rostamzadeh, T. Costanzo, S. Salemizadeh Parizi, G. Caruntu, Nanoscale 7 (2015) 12955–12969.
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| DOI
| PubMed | Europe PMC
D. Caruntu, T. Rostamzadeh, T. Costanzo, S. Salemizadeh Parizi, G. Caruntu, Nanoscale 7 (2015) 12955–12969.
2015 | Journal Article | IST-REx-ID: 7457
Fabrication of barium titanate/acrylonitrile-butadiene styrene/poly(methyl methacrylate) nanocomposite films for hybrid ferroelectric capacitors
S.S. Parizi, G. Conley, T. Costanzo, B. Howell, A. Mellinger, G. Caruntu, RSC Advances 5 (2015) 76356–76362.
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| DOI
S.S. Parizi, G. Conley, T. Costanzo, B. Howell, A. Mellinger, G. Caruntu, RSC Advances 5 (2015) 76356–76362.
2015 | Conference Paper | IST-REx-ID: 782
Lock-Free algorithms under stochastic schedulers
D.-A. Alistarh, T. Sauerwald, M. Vojnović, in:, ACM, 2015, pp. 251–260.
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D.-A. Alistarh, T. Sauerwald, M. Vojnović, in:, ACM, 2015, pp. 251–260.
2015 | Conference Paper | IST-REx-ID: 783 |

How to elect a leader faster than a tournament
D.-A. Alistarh, R. Gelashvili, A. Vladu, in:, ACM, 2015, pp. 365–374.
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D.-A. Alistarh, R. Gelashvili, A. Vladu, in:, ACM, 2015, pp. 365–374.
2015 | Conference Paper | IST-REx-ID: 784
A high-radix, low-latency optical switch for data centers
D.-A. Alistarh, H. Ballani, P. Costa, A. Funnell, J. Benjamin, P. Watts, B. Thomsen, in:, ACM, 2015, pp. 367–368.
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D.-A. Alistarh, H. Ballani, P. Costa, A. Funnell, J. Benjamin, P. Watts, B. Thomsen, in:, ACM, 2015, pp. 367–368.
2015 | Conference Paper | IST-REx-ID: 781
Fast and exact majority in population protocols
D.-A. Alistarh, R. Gelashvili, M. Vojnović, in:, ACM, 2015, pp. 47–56.
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| DOI
D.-A. Alistarh, R. Gelashvili, M. Vojnović, in:, ACM, 2015, pp. 47–56.
2015 | Conference Paper | IST-REx-ID: 780 |

Polylogarithmic-time leader election in population protocols
D.-A. Alistarh, R. Gelashvili, in:, Springer, 2015, pp. 479–491.
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| Download Preprint (ext.)
| arXiv
D.-A. Alistarh, R. Gelashvili, in:, Springer, 2015, pp. 479–491.
2015 | Journal Article | IST-REx-ID: 802
Characterization of an N-acetylglucosaminyltransferase involved in Aspergillus fumigatus zwitterionic glycoinositolphosphoceramide biosynthesis
J. Engel, P.S. Schmalhorst, A. Kruger, C. Muller, F. Buettner, F. Routier, Glycobiology 25 (2015) 1423–1430.
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| DOI
| PubMed | Europe PMC
J. Engel, P.S. Schmalhorst, A. Kruger, C. Muller, F. Buettner, F. Routier, Glycobiology 25 (2015) 1423–1430.
2015 | Journal Article | IST-REx-ID: 814
Structure of the immature HIV-1 capsid in intact virus particles at 8.8 Å resolution
F.K. Schur, W. Hagen, M. Rumlová, T. Ruml, B. Müller, H. Kraüsslich, J. Briggs, Nature 517 (2015) 505–508.
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| DOI
F.K. Schur, W. Hagen, M. Rumlová, T. Ruml, B. Müller, H. Kraüsslich, J. Briggs, Nature 517 (2015) 505–508.
2015 | Journal Article | IST-REx-ID: 815
The structure of immature virus like Rous sarcoma virus gag particles reveals a structural role for the p10 domain in assembly
F.K. Schur, R. Dick, W. Hagen, V. Vogt, J. Briggs, Journal of Virology 89 (2015) 10294–10302.
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| DOI
| PubMed | Europe PMC
F.K. Schur, R. Dick, W. Hagen, V. Vogt, J. Briggs, Journal of Virology 89 (2015) 10294–10302.
2015 | Conference Paper | IST-REx-ID: 1633 |

High-resolution brittle fracture simulation with boundary elements
D. Hahn, C.J. Wojtan, in:, ACM, 2015.
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D. Hahn, C.J. Wojtan, in:, ACM, 2015.
2015 | Journal Article | IST-REx-ID: 866
Massively parallel enzyme kinetics reveals the substrate recognition landscape of the metalloprotease ADAMTS13
C. Kretz, M. Dai, O. Soylemez, A. Yee, K. Desch, D. Siemieniak, K. Tomberg, F. Kondrashov, F. Meng, D. Ginsburg, PNAS 112 (2015) 9328–9333.
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| DOI
C. Kretz, M. Dai, O. Soylemez, A. Yee, K. Desch, D. Siemieniak, K. Tomberg, F. Kondrashov, F. Meng, D. Ginsburg, PNAS 112 (2015) 9328–9333.
2015 | Journal Article | IST-REx-ID: 886
Topological features of rugged fitness landscapes in sequence space
D. Kondrashov, F. Kondrashov, Trends in Genetics 31 (2015) 24–33.
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| DOI
D. Kondrashov, F. Kondrashov, Trends in Genetics 31 (2015) 24–33.
2015 | Journal Article | IST-REx-ID: 924
Dynamic model of heat and mass transfer in an unsaturated porous wick of capillary pumped loop
R. Boubaker, V. Platel, A. Bergès, M. Bancelin, E.B. Hannezo, Applied Thermal Engineering 76 (2015) 1–8.
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| DOI
R. Boubaker, V. Platel, A. Bergès, M. Bancelin, E.B. Hannezo, Applied Thermal Engineering 76 (2015) 1–8.
2015 | Journal Article | IST-REx-ID: 928 |

Assembly and positioning of actomyosin rings by contractility and planar cell polarity
I. Sehring, P. Recho, E. Denker, M. Kourakis, B. Mathiesen, E.B. Hannezo, B. Dong, D. Jiang, ELife 4 (2015).
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I. Sehring, P. Recho, E. Denker, M. Kourakis, B. Mathiesen, E.B. Hannezo, B. Dong, D. Jiang, ELife 4 (2015).
2015 | Journal Article | IST-REx-ID: 929
Cortical instability drives periodic supracellular actin pattern formation in epithelial tubes
E.B. Hannezo, B. Dong, P. Recho, J. Joanny, S. Hayashi, PNAS 112 (2015) 8620–8625.
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| DOI
E.B. Hannezo, B. Dong, P. Recho, J. Joanny, S. Hayashi, PNAS 112 (2015) 8620–8625.
2015 | Journal Article | IST-REx-ID: 933 |

Physics of active jamming during collective cellular motion in a monolayer
S. García, E.B. Hannezo, J. Elgeti, J. Joanny, P. Silberzan, N. Gov, PNAS 112 (2015) 15314–15319.
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| PubMed | Europe PMC
S. García, E.B. Hannezo, J. Elgeti, J. Joanny, P. Silberzan, N. Gov, PNAS 112 (2015) 15314–15319.
2015 | Journal Article | IST-REx-ID: 906
Recent origin of the methacrylate redox system in Geobacter sulfurreducens AM-1 through horizontal gene transfer
O. Arkhipova, M. Meer, G. Mikoulinskaia, M. Zakharova, A. Galushko, V. Akimenko, F. Kondrashov, PLoS One 10 (2015).
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| DOI
O. Arkhipova, M. Meer, G. Mikoulinskaia, M. Zakharova, A. Galushko, V. Akimenko, F. Kondrashov, PLoS One 10 (2015).
2015 | Journal Article | IST-REx-ID: 1591 |

PIN-dependent auxin transport: Action, regulation, and evolution
M. Adamowski, J. Friml, Plant Cell 27 (2015) 20–32.
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| PubMed | Europe PMC
M. Adamowski, J. Friml, Plant Cell 27 (2015) 20–32.
2014 | Journal Article | IST-REx-ID: 1058
Coordinate-targeted and coordinate-stochastic super-resolution microscopy with the reversibly switchable fluorescent protein dreiklang
N. Jensen, J.G. Danzl, K. Willig, F. Lavoie Cardinal, T. Brakemann, S. Hell, S. Jakobs, ChemPhysChem 15 (2014) 756–762.
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N. Jensen, J.G. Danzl, K. Willig, F. Lavoie Cardinal, T. Brakemann, S. Hell, S. Jakobs, ChemPhysChem 15 (2014) 756–762.
2014 | Journal Article | IST-REx-ID: 118
Settling into dry granular media in different gravities
E. Altshuler, H. Torres, A. González_Pita, C.G. Sánchez, C. Pérez Penichet, S.R. Waitukaitis, R. Hidalgo, Geophysical Research Letters 41 (2014) 3032–3037.
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| DOI
E. Altshuler, H. Torres, A. González_Pita, C.G. Sánchez, C. Pérez Penichet, S.R. Waitukaitis, R. Hidalgo, Geophysical Research Letters 41 (2014) 3032–3037.
2014 | Journal Article | IST-REx-ID: 119 |

Size-dependent same-material tribocharging in insulating grains
S.R. Waitukaitis, V. Lee, J. Pierson, S. Forman, H. Jaeger, APS Physics, Physical Review Letters 112 (2014).
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| arXiv
S.R. Waitukaitis, V. Lee, J. Pierson, S. Forman, H. Jaeger, APS Physics, Physical Review Letters 112 (2014).
2014 | Journal Article | IST-REx-ID: 1309
Infinite speed of support propagation for the Derrida-Lebowitz-Speer-Spohn equation and quantum drift-diffusion models
J.L. Fischer, Nonlinear Differential Equations and Applications 21 (2014) 27–50.
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| DOI
J.L. Fischer, Nonlinear Differential Equations and Applications 21 (2014) 27–50.
2014 | Journal Article | IST-REx-ID: 1312
Upper bounds on waiting times for the Thin-film equation: The case of weak slippage
J.L. Fischer, Archive for Rational Mechanics and Analysis 211 (2014) 771–818.
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J.L. Fischer, Archive for Rational Mechanics and Analysis 211 (2014) 771–818.
2014 | Journal Article | IST-REx-ID: 1375 |

Approximating the minimum cycle mean
K. Chatterjee, M. Henzinger, S. Krinninger, V. Loitzenbauer, M. Raskin, Theoretical Computer Science 547 (2014) 104–116.
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K. Chatterjee, M. Henzinger, S. Krinninger, V. Loitzenbauer, M. Raskin, Theoretical Computer Science 547 (2014) 104–116.
2014 | Conference Paper | IST-REx-ID: 1392 |

A logic-based framework for verifying consensus algorithms
C. Dragoi, T.A. Henzinger, H. Veith, J. Widder, D. Zufferey, in:, Springer, 2014, pp. 161–181.
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C. Dragoi, T.A. Henzinger, H. Veith, J. Widder, D. Zufferey, in:, Springer, 2014, pp. 161–181.
2014 | Conference Paper | IST-REx-ID: 1393 |

Probabilistic programming
A. Gordon, T.A. Henzinger, A. Nori, S. Rajamani, in:, Proceedings of the on Future of Software Engineering, ACM, 2014, pp. 167–181.
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A. Gordon, T.A. Henzinger, A. Nori, S. Rajamani, in:, Proceedings of the on Future of Software Engineering, ACM, 2014, pp. 167–181.
2014 | Thesis | IST-REx-ID: 1395
Immune defences in ants: Effects of social immunisation and a fungal ectosymbiont in the ant Lasius neglectus
M. Konrad, Immune Defences in Ants: Effects of Social Immunisation and a Fungal Ectosymbiont in the Ant Lasius Neglectus, IST Austria, 2014.
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M. Konrad, Immune Defences in Ants: Effects of Social Immunisation and a Fungal Ectosymbiont in the Ant Lasius Neglectus, IST Austria, 2014.
2014 | Thesis | IST-REx-ID: 1402
Molecular mechanisms of patterning and subcellular trafficking in Arabidopsis thaliana
P. Marhavá, Molecular Mechanisms of Patterning and Subcellular Trafficking in Arabidopsis Thaliana, IST Austria, 2014.
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P. Marhavá, Molecular Mechanisms of Patterning and Subcellular Trafficking in Arabidopsis Thaliana, IST Austria, 2014.
2014 | Thesis | IST-REx-ID: 1404
Evolution of a fungal pathogen towards individual versus social immunity in ants
M. Stock, Evolution of a Fungal Pathogen towards Individual versus Social Immunity in Ants, IST Austria, 2014.
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M. Stock, Evolution of a Fungal Pathogen towards Individual versus Social Immunity in Ants, IST Austria, 2014.
2014 | Conference Paper | IST-REx-ID: 1507 |

Random matrices, log-gases and Hölder regularity
L. Erdös, in:, Kyung Moon SA Co. Ltd., 2014, pp. 214–236.
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L. Erdös, in:, Kyung Moon SA Co. Ltd., 2014, pp. 214–236.
2014 | Conference Paper | IST-REx-ID: 1516 |

On the BCS gap equation for superfluid fermionic gases
G. Bräunlich, C. Hainzl, R. Seiringer, in:, Proceedings of the QMath12 Conference, World Scientific Publishing, 2014, pp. 127–137.
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| DOI
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| arXiv
G. Bräunlich, C. Hainzl, R. Seiringer, in:, Proceedings of the QMath12 Conference, World Scientific Publishing, 2014, pp. 127–137.
2014 | Journal Article | IST-REx-ID: 1532
Auxin-modulated root growth inhibition in Arabidopsis thaliana seedlings with ammonium as the sole nitrogen source
H. Yang, J. Von Der Fecht Bartenbach, J. Friml, J. Lohmann, B. Neuhäuser, U. Ludewig, Functional Plant Biology 42 (2014) 239–251.
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H. Yang, J. Von Der Fecht Bartenbach, J. Friml, J. Lohmann, B. Neuhäuser, U. Ludewig, Functional Plant Biology 42 (2014) 239–251.
2014 | Journal Article | IST-REx-ID: 1629 |

Edit propagation using geometric relationship functions
P. Guerrero, S. Jeschke, M. Wimmer, P. Wonka, ACM Transactions on Graphics 33 (2014).
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P. Guerrero, S. Jeschke, M. Wimmer, P. Wonka, ACM Transactions on Graphics 33 (2014).
2014 | Conference Paper | IST-REx-ID: 1643 |

Constrained Verifiable Random Functions
G. Fuchsbauer, in:, M. Abdalla, R. De Prisco (Eds.), SCN 2014, Springer, 2014, pp. 95–114.
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G. Fuchsbauer, in:, M. Abdalla, R. De Prisco (Eds.), SCN 2014, Springer, 2014, pp. 95–114.
2014 | Conference Paper | IST-REx-ID: 1702 |

Generalised interpolation by solving recursion free-horn clauses
A. Gupta, C. Popeea, A. Rybalchenko, in:, Electronic Proceedings in Theoretical Computer Science, EPTCS, Open Publishing, 2014, pp. 31–38.
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A. Gupta, C. Popeea, A. Rybalchenko, in:, Electronic Proceedings in Theoretical Computer Science, EPTCS, Open Publishing, 2014, pp. 31–38.
2014 | Conference Paper | IST-REx-ID: 1708
Spatio-temporal representations of uncertainty in spiking neural networks
C. Savin, S. Denève, in:, Neural Information Processing Systems, 2014, pp. 2024–2032.
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C. Savin, S. Denève, in:, Neural Information Processing Systems, 2014, pp. 2024–2032.
2014 | Journal Article | IST-REx-ID: 1761 |

PtSi clustering in silicon probed by transport spectroscopy
M. Mongillo, P. Spathis, G. Katsaros, S. De Franceschi, P. Gentile, R. Rurali, X. Cartoixà, Physical Review X 3 (2014).
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M. Mongillo, P. Spathis, G. Katsaros, S. De Franceschi, P. Gentile, R. Rurali, X. Cartoixà, Physical Review X 3 (2014).
2014 | Journal Article | IST-REx-ID: 1791
Off-target effect of doublecortin family shRNA on neuronal migration associated with endogenous MicroRNA dysregulation
S. Baek, G. Kerjan, S. Bielas, J. Lee, A. Fenstermaker, G. Novarino, J. Gleeson, Neuron 82 (2014) 1255–1262.
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S. Baek, G. Kerjan, S. Bielas, J. Lee, A. Fenstermaker, G. Novarino, J. Gleeson, Neuron 82 (2014) 1255–1262.
2014 | Book Chapter | IST-REx-ID: 1806
Auxin on the road navigated by cellular PIN polarity
P. Baster, J. Friml, in:, E. Zažímalová, J. Petrášek, E. Benková (Eds.), Auxin and Its Role in Plant Development, Springer, 2014, pp. 143–170.
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P. Baster, J. Friml, in:, E. Zažímalová, J. Petrášek, E. Benková (Eds.), Auxin and Its Role in Plant Development, Springer, 2014, pp. 143–170.
2014 | Journal Article | IST-REx-ID: 1816 |

Topology-preserving watermarking of vector graphics
S. Huber, M. Held, P. Meerwald, R. Kwitt, International Journal of Computational Geometry and Applications 24 (2014) 61–86.
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S. Huber, M. Held, P. Meerwald, R. Kwitt, International Journal of Computational Geometry and Applications 24 (2014) 61–86.
2014 | Journal Article | IST-REx-ID: 1821 |

Bose gases, Bose-Einstein condensation, and the Bogoliubov approximation
R. Seiringer, Journal of Mathematical Physics 55 (2014).
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R. Seiringer, Journal of Mathematical Physics 55 (2014).
2014 | Journal Article | IST-REx-ID: 1822
Introduction
V. Jakšić, C. Pillet, R. Seiringer, Journal of Mathematical Physics 55 (2014).
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V. Jakšić, C. Pillet, R. Seiringer, Journal of Mathematical Physics 55 (2014).
2014 | Book Chapter | IST-REx-ID: 1829
Movement templates for learning of hitting and batting
K. Muelling, O. Kroemer, C. Lampert, B. Schölkopf, in:, J. Kober, J. Peters (Eds.), Learning Motor Skills, Springer, 2014, pp. 69–82.
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| DOI
K. Muelling, O. Kroemer, C. Lampert, B. Schölkopf, in:, J. Kober, J. Peters (Eds.), Learning Motor Skills, Springer, 2014, pp. 69–82.
2014 | Journal Article | IST-REx-ID: 1844 |

Mutational studies on resurrected ancestral proteins reveal conservation of site-specific amino acid preferences throughout evolutionary history
V. Risso, F. Manssour Triedo, A. Delgado Delgado, R. Arco, A. Barroso Deljesús, Á. Inglés Prieto, R. Godoy Ruiz, J. Gavira, E. Gaucher, B. Ibarra Molero, J. Sánchez Ruiz, Molecular Biology and Evolution 32 (2014) 440–455.
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V. Risso, F. Manssour Triedo, A. Delgado Delgado, R. Arco, A. Barroso Deljesús, Á. Inglés Prieto, R. Godoy Ruiz, J. Gavira, E. Gaucher, B. Ibarra Molero, J. Sánchez Ruiz, Molecular Biology and Evolution 32 (2014) 440–455.
2014 | Journal Article | IST-REx-ID: 1852 |

An auxin-mediated shift toward growth isotropy promotes organ formation at the shoot meristem in Arabidopsis
M. Sassi, O. Ali, F. Boudon, G. Cloarec, U. Abad, C. Cellier, X. Chen, B. Gilles, P. Milani, J. Friml, T. Vernoux, C. Godin, O. Hamant, J. Traas, Current Biology 24 (2014) 2335–2342.
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M. Sassi, O. Ali, F. Boudon, G. Cloarec, U. Abad, C. Cellier, X. Chen, B. Gilles, P. Milani, J. Friml, T. Vernoux, C. Godin, O. Hamant, J. Traas, Current Biology 24 (2014) 2335–2342.
2014 | Conference Paper | IST-REx-ID: 1853
Game theoretic secure localization in wireless sensor networks
S. Jha, S. Tripakis, S. Seshia, K. Chatterjee, in:, IEEE, 2014, pp. 85–90.
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S. Jha, S. Tripakis, S. Seshia, K. Chatterjee, in:, IEEE, 2014, pp. 85–90.
2014 | Journal Article | IST-REx-ID: 1854 |

Partial shape matching using transformation parameter similarity
P. Guerrero, T. Auzinger, M. Wimmer, S. Jeschke, Computer Graphics Forum 34 (2014) 239–252.
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P. Guerrero, T. Auzinger, M. Wimmer, S. Jeschke, Computer Graphics Forum 34 (2014) 239–252.
2014 | Journal Article | IST-REx-ID: 1842 |

On the geometric ramsey number of outerplanar graphs
J. Cibulka, P. Gao, M. Krcál, T. Valla, P. Valtr, Discrete & Computational Geometry 53 (2014) 64–79.
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J. Cibulka, P. Gao, M. Krcál, T. Valla, P. Valtr, Discrete & Computational Geometry 53 (2014) 64–79.
2014 | Journal Article | IST-REx-ID: 1862 |

Inhibition of cell expansion by rapid ABP1-mediated auxin effect on microtubules
X. Chen, L. Grandont, H. Li, R. Hauschild, S. Paque, A. Abuzeineh, H. Rakusová, E. Benková, C. Perrot Rechenmann, J. Friml, Nature 516 (2014) 90–93.
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X. Chen, L. Grandont, H. Li, R. Hauschild, S. Paque, A. Abuzeineh, H. Rakusová, E. Benková, C. Perrot Rechenmann, J. Friml, Nature 516 (2014) 90–93.
2014 | Conference Paper | IST-REx-ID: 1869
Suraq - a controller synthesis tool using uninterpreted functions
G. Hofferek, A. Gupta, in:, E. Yahav (Ed.), HVC 2014, Springer, 2014, pp. 68–74.
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| DOI
G. Hofferek, A. Gupta, in:, E. Yahav (Ed.), HVC 2014, Springer, 2014, pp. 68–74.