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475 Publications


2019 | Journal Article | IST-REx-ID: 6105 | OA
A multi-faceted approach testing the effects of previous bacterial exposure on resistance and tolerance
M. Kutzer, J. Kurtz, S.A.O. Armitage, Journal of Animal Ecology 88 (2019) 566–578.
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2019 | Journal Article | IST-REx-ID: 6831 | OA
Variation in sexual dimorphism in a wind-pollinated plant: The influence of geographical context and life-cycle dynamics
G. Puixeu Sala, M. Pickup, D. Field, S.C.H. Barrett, New Phytologist 224 (2019) 1108–1120.
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2019 | Journal Article | IST-REx-ID: 6713 | OA
An integrative genomic analysis of the Longshanks selection experiment for longer limbs in mice
J.P. Castro, M.N. Yancoskie, M. Marchini, S. Belohlavy, L. Hiramatsu, M. Kučka, W.H. Beluch, R. Naumann, I. Skuplik, J. Cobb, N.H. Barton, C. Rolian, Y.F. Chan, ELife 8 (2019).
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2019 | Research Data Reference | IST-REx-ID: 9804
Data from: An integrative genomic analysis of the Longshanks selection experiment for longer limbs in mice
J.P. Castro, M.N. Yancoskie, M. Marchini, S. Belohlavy, L. Hiramatsu, M. Kučka, W.H. Beluch, R. Naumann, I. Skuplik, J. Cobb, N.H. Barton, C. Rolian, Y.F. Chan, (2019).
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2019 | Research Data Reference | IST-REx-ID: 9803 View | Files available | DOI
 

2019 | Research Data Reference | IST-REx-ID: 9805 View | Files available | DOI
 

2019 | Research Data Reference | IST-REx-ID: 9802 View | Files available | DOI
 

2019 | Research Data Reference | IST-REx-ID: 9806 View | Files available | DOI
 

2019 | Journal Article | IST-REx-ID: 9586 | OA
Anticoncentration for subgraph statistics
M.A. Kwan, B. Sudakov, T. Tran, Journal of the London Mathematical Society 99 (2019) 757–777.
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2019 | Journal Article | IST-REx-ID: 9580 | OA
Hypergraph cuts above the average
D. Conlon, J. Fox, M.A. Kwan, B. Sudakov, Israel Journal of Mathematics 233 (2019) 67–111.
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2019 | Journal Article | IST-REx-ID: 9677 | OA
i-PI 2.0: A universal force engine for advanced molecular simulations
Kapil V, Rossi M, Marsalek O, Petraglia R, Litman Y, Spura T, Cheng B, Cuzzocrea A, Meißner RH, Wilkins DM, Helfrecht BA, Juda P, Bienvenue SP, Fang W, Kessler J, Poltavsky I, Vandenbrande S, Wieme J, Corminboeuf C, Kühne TD, Manolopoulos DE, Markland TE, Richardson JO, Tkatchenko A, Tribello GA, Van Speybroeck V, Ceriotti M. 2019. i-PI 2.0: A universal force engine for advanced molecular simulations. Computer Physics Communications. 236, 214–223.
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2019 | Journal Article | IST-REx-ID: 9680 | OA
Iterative unbiasing of quasi-equilibrium sampling
F. Giberti, B. Cheng, G.A. Tribello, M. Ceriotti, Journal of Chemical Theory and Computation 16 (2019) 100–107.
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2019 | Journal Article | IST-REx-ID: 6095 | OA
Multiple chromosomal rearrangements in a hybrid zone between Littorina saxatilis ecotypes
R. Faria, P. Chaube, H.E. Morales, T. Larsson, A.R. Lemmon, E.M. Lemmon, M. Rafajlović, M. Panova, M. Ravinet, K. Johannesson, A.M. Westram, R.K. Butlin, Molecular Ecology 28 (2019) 1375–1393.
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2019 | Research Data Reference | IST-REx-ID: 9839 View | Files available | DOI
 

2019 | Journal Article | IST-REx-ID: 6467 | OA
The distribution of epistasis on simple fitness landscapes
C. Fraisse, J.J. Welch, Biology Letters 15 (2019).
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2019 | Research Data Reference | IST-REx-ID: 9731
Additional file 11 of Chlamydia pan-genomic analysis reveals balance between host adaptation and selective pressure to genome reduction
O. Sigalova, A. Chaplin, O. Bochkareva, P. Shelyakin, V. Filaretov, E. Akkuratov, V. Burskaia, M.S. Gelfand, (2019).
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2019 | Research Data Reference | IST-REx-ID: 9783
Additional file 10 of Chlamydia pan-genomic analysis reveals balance between host adaptation and selective pressure to genome reduction
O.M. Sigalova, A.V. Chaplin, O. Bochkareva, P.V. Shelyakin, V.A. Filaretov, E.E. Akkuratov, V. Burskaia, M.S. Gelfand, (2019).
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2019 | Research Data Reference | IST-REx-ID: 9890
Additional file 15 of Chlamydia pan-genomic analysis reveals balance between host adaptation and selective pressure to genome reduction
O.M. Sigalova, A.V. Chaplin, O. Bochkareva, P.V. Shelyakin, V.A. Filaretov, E.E. Akkuratov, V. Burskaia, M.S. Gelfand, (2019).
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2019 | Research Data Reference | IST-REx-ID: 9892
Additional file 16 of Chlamydia pan-genomic analysis reveals balance between host adaptation and selective pressure to genome reduction
O.M. Sigalova, A.V. Chaplin, O. Bochkareva, P.V. Shelyakin, V.A. Filaretov, E.E. Akkuratov, V. Burskaia, M.S. Gelfand, (2019).
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2019 | Research Data Reference | IST-REx-ID: 9893
Additional file 17 of Chlamydia pan-genomic analysis reveals balance between host adaptation and selective pressure to genome reduction
O.M. Sigalova, A.V. Chaplin, O. Bochkareva, P.V. Shelyakin, V.A. Filaretov, E.E. Akkuratov, V. Burskaia, M.S. Gelfand, (2019).
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2019 | Research Data Reference | IST-REx-ID: 9894
Additional file 18 of Chlamydia pan-genomic analysis reveals balance between host adaptation and selective pressure to genome reduction
O.M. Sigalova, A.V. Chaplin, O. Bochkareva, P.V. Shelyakin, V.A. Filaretov, E.E. Akkuratov, V. Burskaia, M.S. Gelfand, (2019).
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2019 | Research Data Reference | IST-REx-ID: 9895
Additional file 19 of Chlamydia pan-genomic analysis reveals balance between host adaptation and selective pressure to genome reduction
O.M. Sigalova, A.V. Chaplin, O. Bochkareva, P.V. Shelyakin, V.A. Filaretov, E.E. Akkuratov, V. Burskaia, M.S. Gelfand, (2019).
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2019 | Research Data Reference | IST-REx-ID: 9898
Additional file 21 of Chlamydia pan-genomic analysis reveals balance between host adaptation and selective pressure to genome reduction
O.M. Sigalova, A.V. Chaplin, O. Bochkareva, P.V. Shelyakin, V.A. Filaretov, E.E. Akkuratov, V. Burskaia, M.S. Gelfand, (2019).
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2019 | Research Data Reference | IST-REx-ID: 9897
Additional file 20 of Chlamydia pan-genomic analysis reveals balance between host adaptation and selective pressure to genome reduction
O.M. Sigalova, A.V. Chaplin, O. Bochkareva, P.V. Shelyakin, V.A. Filaretov, E.E. Akkuratov, V. Burskaia, M.S. Gelfand, (2019).
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2019 | Research Data Reference | IST-REx-ID: 9901
Additional file 9 of Chlamydia pan-genomic analysis reveals balance between host adaptation and selective pressure to genome reduction
O.M. Sigalova, A.V. Chaplin, O. Bochkareva, P.V. Shelyakin, V.A. Filaretov, E.E. Akkuratov, V. Burskaia, M.S. Gelfand, (2019).
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2019 | Research Data Reference | IST-REx-ID: 9899
Additional file 2 of Chlamydia pan-genomic analysis reveals balance between host adaptation and selective pressure to genome reduction
O.M. Sigalova, A.V. Chaplin, O. Bochkareva, P.V. Shelyakin, V.A. Filaretov, E.E. Akkuratov, V. Burskaia, M.S. Gelfand, (2019).
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2019 | Research Data Reference | IST-REx-ID: 9900
Additional file 5 of Chlamydia pan-genomic analysis reveals balance between host adaptation and selective pressure to genome reduction
O.M. Sigalova, A.V. Chaplin, O. Bochkareva, P.V. Shelyakin, V.A. Filaretov, E.E. Akkuratov, V. Burskaia, M.S. Gelfand, (2019).
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2019 | Journal Article | IST-REx-ID: 9460 | OA
DNA demethylation by ROS1a in rice vegetative cells promotes methylation in sperm
M.Y. Kim, A. Ono, S. Scholten, T. Kinoshita, D. ZILBERMAN, T. Okamoto, R.L. Fischer, Proceedings of the National Academy of Sciences 116 (2019) 9652–9657.
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2019 | Journal Article | IST-REx-ID: 9530 | OA
DNA methylation is maintained with high fidelity in the honey bee germline and exhibits global non-functional fluctuations during somatic development
K.D. Harris, J.P.B. Lloyd, K. Domb, D. ZILBERMAN, A. Zemach, Epigenetics and Chromatin 12 (2019).
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2019 | Journal Article | IST-REx-ID: 6609 | OA
Stationary entangled radiation from micromechanical motion
S. Barzanjeh, E. Redchenko, M. Peruzzo, M. Wulf, D. Lewis, G.M. Arnold, J.M. Fink, Nature 570 (2019) 480–483.
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2019 | Journal Article | IST-REx-ID: 6053 | OA
Quantum electromechanics of a hypersonic crystal
M. Kalaee, M. Mirhosseini, P.B. Dieterle, M. Peruzzo, J.M. Fink, O. Painter, Nature Nanotechnology 14 (2019) 334–339.
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2019 | Conference Paper | IST-REx-ID: 6780 | OA
Modular verification for almost-sure termination of probabilistic programs
M. Huang, H. Fu, K. Chatterjee, A.K. Goharshady, in:, Proceedings of the 34th ACM International Conference on Object-Oriented Programming, Systems, Languages, and Applications , ACM, 2019.
View | Files available | DOI | arXiv
 

2019 | Conference Paper | IST-REx-ID: 6175 | OA
Cost analysis of nondeterministic probabilistic programs
P. Wang, H. Fu, A.K. Goharshady, K. Chatterjee, X. Qin, W. Shi, in:, PLDI 2019: Proceedings of the 40th ACM SIGPLAN Conference on Programming Language Design and Implementation, Association for Computing Machinery, 2019, pp. 204–220.
View | Files available | DOI | arXiv
 

2019 | Journal Article | IST-REx-ID: 7158 | OA
Faster algorithms for dynamic algebraic queries in basic RSMs with constant treewidth
K. Chatterjee, A.K. Goharshady, P. Goyal, R. Ibsen-Jensen, A. Pavlogiannis, ACM Transactions on Programming Languages and Systems 41 (2019).
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2019 | Conference Paper | IST-REx-ID: 6056 | OA
Probabilistic smart contracts: Secure randomness on the blockchain
K. Chatterjee, A.K. Goharshady, A. Pourdamghani, in:, IEEE International Conference on Blockchain and Cryptocurrency, IEEE, 2019.
View | Files available | DOI | Download Preprint (ext.) | arXiv
 

2019 | Journal Article | IST-REx-ID: 7014 | OA
Non-polynomial worst-case analysis of recursive programs
K. Chatterjee, H. Fu, A.K. Goharshady, ACM Transactions on Programming Languages and Systems 41 (2019).
View | Files available | DOI | Download Preprint (ext.) | arXiv
 

2019 | Conference Paper | IST-REx-ID: 6378 | OA
Hybrid Mining: Exploiting blockchain’s computational power for distributed problem solving
K. Chatterjee, A.K. Goharshady, A. Pourdamghani, in:, Proceedings of the 34th ACM Symposium on Applied Computing, ACM, 2019, pp. 374–381.
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2019 | Journal Article | IST-REx-ID: 6380 | OA
Efficient parameterized algorithms for data packing
K. Chatterjee, A.K. Goharshady, N. Okati, A. Pavlogiannis, Proceedings of the ACM on Programming Languages 3 (2019).
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2019 | Conference Paper | IST-REx-ID: 6490 | OA
The treewidth of smart contracts
K. Chatterjee, A.K. Goharshady, E.K. Goharshady, in:, Proceedings of the 34th ACM Symposium on Applied Computing, ACM, n.d., pp. 400–408.
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2019 | Journal Article | IST-REx-ID: 6260 | OA
Pinstatic acid promotes auxin transport by inhibiting PIN internalization
A. Oochi, J. Hajny, K. Fukui, Y. Nakao, M.C. Gallei, M. Quareshy, K. Takahashi, T. Kinoshita, S. Harborough, S. Kepinski, H. Kasahara, R. Napier, J. Friml, K. Hayashi, Plant Physiology 180 (2019) 1152–1165.
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2019 | Thesis | IST-REx-ID: 6894 | OA
Automatic time-unbounded reachability analysis of hybrid systems
M. Giacobbe, Automatic Time-Unbounded Reachability Analysis of Hybrid Systems, IST Austria, 2019.
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2019 | Preprint | IST-REx-ID: 8305 | OA
Bootstrapping consensus without trusted setup: fully asynchronous distributed key generation
E. Kokoris Kogias, A. Spiegelman, D. Malkhi, I. Abraham, Cryptology EPrint Archive (n.d.).
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2019 | Preprint | IST-REx-ID: 8303 | OA
Robust and scalable consensus for sharded distributed ledgers
E. Kokoris Kogias, Cryptology EPrint Archive (n.d.).
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2019 | Preprint | IST-REx-ID: 8304 | OA
SoK: Communication across distributed ledgers
A. Zamyatin, M. Al-Bassam, D. Zindros, E. Kokoris Kogias, P. Moreno-Sanchez, A. Kiayias, W.J. Knottenbelt, Cryptology EPrint Archive (n.d.).
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2019 | Patent | IST-REx-ID: 8313
Methods and systems for secure data exchange
B. Ford, L. Gasser, E. Kokoris Kogias, P. Janovic, (2019).
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2019 | Preprint | IST-REx-ID: 10065 | OA
Assessing the potential of Ge/SiGe quantum dots as hosts for singlet-triplet qubits
A.C. Hofmann, D. Jirovec, M. Borovkov, I. Prieto Gonzalez, A. Ballabio, J. Frigerio, D. Chrastina, G. Isella, G. Katsaros, ArXiv (n.d.).
View | Files available | Download Preprint (ext.) | arXiv
 

2019 | Conference Paper | IST-REx-ID: 6430 | OA
Adaptively secure proxy re-encryption
G. Fuchsbauer, C. Kamath Hosdurg, K. Klein, K.Z. Pietrzak, in:, Springer Nature, 2019, pp. 317–346.
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2019 | Journal Article | IST-REx-ID: 6627 | OA View | Files available | DOI | PubMed | Europe PMC
 

2019 | Journal Article | IST-REx-ID: 6898 | OA
Chlamydia pan-genomic analysis reveals balance between host adaptation and selective pressure to genome reduction
O.M. Sigalova, A.V. Chaplin, O. Bochkareva, P.V. Shelyakin, V.A. Filaretov, E.E. Akkuratov, V. Burskaia, M.S. Gelfand, BMC Genomics 20 (2019).
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