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437 Publications
2019 | Thesis | IST-REx-ID: 6957 | 
Onset of turbulence in plane Poiseuille flow
C.S. Paranjape, Onset of Turbulence in Plane Poiseuille Flow, IST Austria, 2019.
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C.S. Paranjape, Onset of Turbulence in Plane Poiseuille Flow, IST Austria, 2019.
2019 | Journal Article | IST-REx-ID: 6972 |
Self-stabilising Byzantine clock synchronisation is almost as easy as consensus
C. Lenzen, J. Rybicki, Journal of the ACM 66 (2019).
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| arXiv
C. Lenzen, J. Rybicki, Journal of the ACM 66 (2019).
2019 | Journal Article | IST-REx-ID: 6978 |
Geometry of transient chaos in streamwise-localized pipe flow turbulence
N.B. Budanur, A. Dogra, B. Hof, Physical Review Fluids 4 (2019) 102401.
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| arXiv
N.B. Budanur, A. Dogra, B. Hof, Physical Review Fluids 4 (2019) 102401.
2019 | Journal Article | IST-REx-ID: 6979
Gut homeostasis: Active migration of intestinal epithelial cells in tissue renewal
A. Kopf, M.K. Sixt, Current Biology 29 (2019) R1091–R1093.
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| PubMed | Europe PMC
A. Kopf, M.K. Sixt, Current Biology 29 (2019) R1091–R1093.
2019 | Journal Article | IST-REx-ID: 6980 |
Tissue rheology in embryonic organization
N. Petridou, C.-P.J. Heisenberg, The EMBO Journal 38 (2019).
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| PubMed | Europe PMC
N. Petridou, C.-P.J. Heisenberg, The EMBO Journal 38 (2019).
2019 | Journal Article | IST-REx-ID: 6982 |
Recognizing weak embeddings of graphs
H. Akitaya, R. Fulek, C. Tóth, ACM Transactions on Algorithms 15 (2019).
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| arXiv
H. Akitaya, R. Fulek, C. Tóth, ACM Transactions on Algorithms 15 (2019).
2019 | Journal Article | IST-REx-ID: 6983 |
Clustering of activated CD8 T cells around Malaria-infected hepatocytes is rapid and is driven by antigen-specific cells
R.K. Kelemen, H. Rajakaruna, I. Cockburn, V. Ganusov, Frontiers in Immunology 10 (2019).
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| PubMed | Europe PMC
R.K. Kelemen, H. Rajakaruna, I. Cockburn, V. Ganusov, Frontiers in Immunology 10 (2019).
2019 | Conference Paper | IST-REx-ID: 6985 |
Response characterization for auditing cell dynamics in long short-term memory networks
R. Hasani, A. Amini, M. Lechner, F. Naser, R. Grosu, D. Rus, in:, Proceedings of the International Joint Conference on Neural Networks, IEEE, 2019.
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| arXiv
R. Hasani, A. Amini, M. Lechner, F. Naser, R. Grosu, D. Rus, in:, Proceedings of the International Joint Conference on Neural Networks, IEEE, 2019.
2019 | Journal Article | IST-REx-ID: 6986 |
A colimit of traces of reflection groups
P. Li, Proceedings of the American Mathematical Society 147 (2019) 4597–4604.
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| arXiv
P. Li, Proceedings of the American Mathematical Society 147 (2019) 4597–4604.
2019 | Book Chapter | IST-REx-ID: 6987 |
Emergence of embryo shape during cleavage divisions
A. McDougall, J. Chenevert, B.G. Godard, R. Dumollard, in:, W. Tworzydlo, S.M. Bilinski (Eds.), Evo-Devo: Non-Model Species in Cell and Developmental Biology, Springer Nature, 2019, pp. 127–154.
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A. McDougall, J. Chenevert, B.G. Godard, R. Dumollard, in:, W. Tworzydlo, S.M. Bilinski (Eds.), Evo-Devo: Non-Model Species in Cell and Developmental Biology, Springer Nature, 2019, pp. 127–154.
2019 | Journal Article | IST-REx-ID: 6988
Platelets in host defense: Experimental and clinical insights
L. Nicolai, F.R. Gärtner, S. Massberg, Trends in Immunology 40 (2019) 922–938.
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| PubMed | Europe PMC
L. Nicolai, F.R. Gärtner, S. Massberg, Trends in Immunology 40 (2019) 922–938.
2019 | Conference Paper | IST-REx-ID: 6989 |
Folding polyominoes with holes into a cube
O. Aichholzer, H.A. Akitaya, K.C. Cheung, E.D. Demaine, M.L. Demaine, S.P. Fekete, L. Kleist, I. Kostitsyna, M. Löffler, Z. Masárová, K. Mundilova, C. Schmidt, in:, Proceedings of the 31st Canadian Conference on Computational Geometry, Canadian Conference on Computational Geometry, 2019, pp. 164–170.
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| arXiv
O. Aichholzer, H.A. Akitaya, K.C. Cheung, E.D. Demaine, M.L. Demaine, S.P. Fekete, L. Kleist, I. Kostitsyna, M. Löffler, Z. Masárová, K. Mundilova, C. Schmidt, in:, Proceedings of the 31st Canadian Conference on Computational Geometry, Canadian Conference on Computational Geometry, 2019, pp. 164–170.
2019 | Preprint | IST-REx-ID: 6995 |
Identification of neural oscillations and epileptiform changes in human brain organoids
R.A. Samarasinghe, O. Miranda, S. Mitchell, I. Ferando, M. Watanabe, J.E. Buth, A. Kurdian, P. Golshani, K. Plath, W.E. Lowry, J.M. Parent, I. Mody, B.G. Novitch, BioRxiv (2019).
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R.A. Samarasinghe, O. Miranda, S. Mitchell, I. Ferando, M. Watanabe, J.E. Buth, A. Kurdian, P. Golshani, K. Plath, W.E. Lowry, J.M. Parent, I. Mody, B.G. Novitch, BioRxiv (2019).
2019 | Journal Article | IST-REx-ID: 6999 |
Salicylic acid-mediated plasmodesmal closure via Remorin-dependent lipid organization
D. Huang, Y. Sun, Z. Ma, M. Ke, Y. Cui, Z. Chen, C. Chen, C. Ji, T. Tran, L. Yang, S. Lam, Y. Han, G. Shu, J. Friml, Y. Miao, L. Jiang, X. Chen, Proceedings of the National Academy of Sciences of the United States of America 116 (2019) 21274–21284.
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D. Huang, Y. Sun, Z. Ma, M. Ke, Y. Cui, Z. Chen, C. Chen, C. Ji, T. Tran, L. Yang, S. Lam, Y. Han, G. Shu, J. Friml, Y. Miao, L. Jiang, X. Chen, Proceedings of the National Academy of Sciences of the United States of America 116 (2019) 21274–21284.
2019 | Journal Article | IST-REx-ID: 7000 |
Convergence analysis of projection method for variational inequalities
Y. Shehu, O.S. Iyiola, X.-H. Li, Q.-L. Dong, Computational and Applied Mathematics 38 (2019).
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| arXiv
Y. Shehu, O.S. Iyiola, X.-H. Li, Q.-L. Dong, Computational and Applied Mathematics 38 (2019).
2019 | Journal Article | IST-REx-ID: 7001 |
Mechanosensation of tight junctions depends on ZO-1 phase separation and flow
C. Schwayer, S. Shamipour, K. Pranjic-Ferscha, A. Schauer, M. Balda, M. Tada, K. Matter, C.-P.J. Heisenberg, Cell 179 (2019) 937–952.e18.
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C. Schwayer, S. Shamipour, K. Pranjic-Ferscha, A. Schauer, M. Balda, M. Tada, K. Matter, C.-P.J. Heisenberg, Cell 179 (2019) 937–952.e18.
2019 | Journal Article | IST-REx-ID: 7002
Optimal multiple importance sampling
I. Kondapaneni, P. Vevoda, P. Grittmann, T. Skrivan, P. Slusallek, J. Křivánek, ACM Transactions on Graphics 38 (2019).
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| DOI
I. Kondapaneni, P. Vevoda, P. Grittmann, T. Skrivan, P. Slusallek, J. Křivánek, ACM Transactions on Graphics 38 (2019).
2019 | Journal Article | IST-REx-ID: 7005 |
Synaptic vesicle generation from activity‐dependent bulk endosomes requires a dephosphorylation‐dependent dynamin–syndapin interaction
G.T. Cheung, M.A. Cousin, Journal of Neurochemistry 151 (2019) 570–583.
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| PubMed | Europe PMC
G.T. Cheung, M.A. Cousin, Journal of Neurochemistry 151 (2019) 570–583.
2019 | Journal Article | IST-REx-ID: 7007 |
A new coding paradigm for the primitive relay channel
M. Mondelli, S.H. Hassani, R. Urbanke, Algorithms 12 (2019).
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| DOI
| arXiv
M. Mondelli, S.H. Hassani, R. Urbanke, Algorithms 12 (2019).
2019 | Journal Article | IST-REx-ID: 7009
Mechanisms of 3D cell migration
K. Yamada, M.K. Sixt, Nature Reviews Molecular Cell Biology 20 (2019) 738–752.
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| PubMed | Europe PMC
K. Yamada, M.K. Sixt, Nature Reviews Molecular Cell Biology 20 (2019) 738–752.
2019 | Conference Paper | IST-REx-ID: 7010 |
Blood cell-vessel wall interactions probed by reflection interference contrast microscopy
H.S. Davies, N.S. Baranova, N. El Amri, L. Coche-Guérente, C. Verdier, L. Bureau, R.P. Richter, D. Débarre, in:, Advances in Microscopic Imaging II, SPIE, 2019.
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H.S. Davies, N.S. Baranova, N. El Amri, L. Coche-Guérente, C. Verdier, L. Bureau, R.P. Richter, D. Débarre, in:, Advances in Microscopic Imaging II, SPIE, 2019.
2019 | Journal Article | IST-REx-ID: 7013 |
Probing the many-body localization phase transition with superconducting circuits
T. Orell, A. Michailidis, M. Serbyn, M. Silveri, Physical Review B 100 (2019).
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| arXiv
T. Orell, A. Michailidis, M. Serbyn, M. Silveri, Physical Review B 100 (2019).
2019 | Journal Article | IST-REx-ID: 7015 |
Floating Wigner crystal with no boundary charge fluctuations
M. Lewin, E.H. Lieb, R. Seiringer, Physical Review B 100 (2019).
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| arXiv
M. Lewin, E.H. Lieb, R. Seiringer, Physical Review B 100 (2019).
2019 | Research Data | IST-REx-ID: 7016 |
Data for the paper "Gene amplification as a form of population-level gene expression regulation"
I. Tomanek, (2019).
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I. Tomanek, (2019).
2019 | Journal Article | IST-REx-ID: 7026 |
Emergent gene expression responses to drug combinations predict higher-order drug interactions
M. Lukacisin, M.T. Bollenbach, Cell Systems 9 (2019) 423-433.e1-e3.
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M. Lukacisin, M.T. Bollenbach, Cell Systems 9 (2019) 423-433.e1-e3.
2019 | Conference Paper | IST-REx-ID: 7032
Electro-optic frequency comb generation in lithium niobate whispering gallery mode resonators
A.R. Rueda Sanchez, F. Sedlmeir, G. Leuchs, M. Kuamri, H.G.L. Schwefel, in:, 2019 Conference on Lasers and Electro-Optics Europe & European Quantum Electronics Conference, IEEE, 2019.
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A.R. Rueda Sanchez, F. Sedlmeir, G. Leuchs, M. Kuamri, H.G.L. Schwefel, in:, 2019 Conference on Lasers and Electro-Optics Europe & European Quantum Electronics Conference, IEEE, 2019.
2019 | Journal Article | IST-REx-ID: 7034 |
Counterexample to an extension of the Hanani-Tutte theorem on the surface of genus 4
R. Fulek, J. Kynčl, Combinatorica 39 (2019) 1267–1279.
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| arXiv
R. Fulek, J. Kynčl, Combinatorica 39 (2019) 1267–1279.
2019 | Conference Paper | IST-REx-ID: 7035 |
Dirac masses and isometric rigidity
G.P. Geher, T. Titkos, D. Virosztek, in:, Kyoto RIMS Kôkyûroku, Research Institute for Mathematical Sciences, Kyoto University, 2019, pp. 34–41.
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G.P. Geher, T. Titkos, D. Virosztek, in:, Kyoto RIMS Kôkyûroku, Research Institute for Mathematical Sciences, Kyoto University, 2019, pp. 34–41.
2019 | Journal Article | IST-REx-ID: 7055 |
Out-of-plane transport in ZrSiS and ZrSiSe microstructures
K.R. Shirer, K.A. Modic, T. Zimmerling, M.D. Bachmann, M. König, P.J.W. Moll, L. Schoop, A.P. Mackenzie, APL Materials 7 (2019).
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K.R. Shirer, K.A. Modic, T. Zimmerling, M.D. Bachmann, M. König, P.J.W. Moll, L. Schoop, A.P. Mackenzie, APL Materials 7 (2019).
2019 | Journal Article | IST-REx-ID: 7056 |
Persistent antiferromagnetic order in heavily overdoped Ca1−x La x FeAs2
E. Martino, M.D. Bachmann, L. Rossi, K.A. Modic, I. Zivkovic, H.M. Rønnow, P.J.W. Moll, A. Akrap, L. Forró, S. Katrych, Journal of Physics: Condensed Matter 31 (2019).
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| arXiv
E. Martino, M.D. Bachmann, L. Rossi, K.A. Modic, I. Zivkovic, H.M. Rønnow, P.J.W. Moll, A. Akrap, L. Forró, S. Katrych, Journal of Physics: Condensed Matter 31 (2019).
2019 | Journal Article | IST-REx-ID: 7057 |
Thermodynamic signatures of Weyl fermions in NbP
K.A. Modic, T. Meng, F. Ronning, E.D. Bauer, P.J.W. Moll, B.J. Ramshaw, Scientific Reports 9 (2019).
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K.A. Modic, T. Meng, F. Ronning, E.D. Bauer, P.J.W. Moll, B.J. Ramshaw, Scientific Reports 9 (2019).
2019 | Journal Article | IST-REx-ID: 7082
Spatial control of heavy-fermion superconductivity in CeIrIn5
M.D. Bachmann, G.M. Ferguson, F. Theuss, T. Meng, C. Putzke, T. Helm, K.R. Shirer, Y.-S. Li, K.A. Modic, M. Nicklas, M. König, D. Low, S. Ghosh, A.P. Mackenzie, F. Arnold, E. Hassinger, R.D. McDonald, L.E. Winter, E.D. Bauer, F. Ronning, B.J. Ramshaw, K.C. Nowack, P.J.W. Moll, Science 366 (2019) 221–226.
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M.D. Bachmann, G.M. Ferguson, F. Theuss, T. Meng, C. Putzke, T. Helm, K.R. Shirer, Y.-S. Li, K.A. Modic, M. Nicklas, M. König, D. Low, S. Ghosh, A.P. Mackenzie, F. Arnold, E. Hassinger, R.D. McDonald, L.E. Winter, E.D. Bauer, F. Ronning, B.J. Ramshaw, K.C. Nowack, P.J.W. Moll, Science 366 (2019) 221–226.
2019 | Preprint | IST-REx-ID: 7085 |
Scale-invariance of a spin liquid in high magnetic fields
K.A. Modic, R.D. McDonald, J.P.C. Ruff, M.D. Bachmann, Y. Lai, J.C. Palmstrom, D. Graf, M. Chan, F.F. Balakirev, J.B. Betts, G.S. Boebinger, M. Schmidt, D.A. Sokolov, P.J.W. Moll, B.J. Ramshaw, A. Shekhter, ArXiv (n.d.).
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| arXiv
K.A. Modic, R.D. McDonald, J.P.C. Ruff, M.D. Bachmann, Y. Lai, J.C. Palmstrom, D. Graf, M. Chan, F.F. Balakirev, J.B. Betts, G.S. Boebinger, M. Schmidt, D.A. Sokolov, P.J.W. Moll, B.J. Ramshaw, A. Shekhter, ArXiv (n.d.).
2019 | Journal Article | IST-REx-ID: 7093 |
On the treewidth of triangulated 3-manifolds
K. Huszár, J. Spreer, U. Wagner, Journal of Computational Geometry 10 (2019) 70–98.
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| DOI
| arXiv
K. Huszár, J. Spreer, U. Wagner, Journal of Computational Geometry 10 (2019) 70–98.
2019 | Journal Article | IST-REx-ID: 7095 |
Completion of BAX recruitment correlates with mitochondrial fission during apoptosis
M.E. Maes, J.A. Grosser, R.L. Fehrman, C.L. Schlamp, R.W. Nickells, Scientific Reports 9 (2019).
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| PubMed | Europe PMC
M.E. Maes, J.A. Grosser, R.L. Fehrman, C.L. Schlamp, R.W. Nickells, Scientific Reports 9 (2019).
2019 | Journal Article | IST-REx-ID: 7097 |
Rab5-mediated endosome formation is regulated at the trans-Golgi network
M. Nagano, J.Y. Toshima, D.E. Siekhaus, J. Toshima, Communications Biology 2 (2019).
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M. Nagano, J.Y. Toshima, D.E. Siekhaus, J. Toshima, Communications Biology 2 (2019).
2019 | Journal Article | IST-REx-ID: 7099 |
Structural and functional remodeling of amygdala GABAergic synapses in associative fear learning
Y. Kasugai, E. Vogel, H. Hörtnagl, S. Schönherr, E. Paradiso, M. Hauschild, G. Göbel, I. Milenkovic, Y. Peterschmitt, R. Tasan, G. Sperk, R. Shigemoto, W. Sieghart, N. Singewald, A. Lüthi, F. Ferraguti, Neuron 104 (2019) 781–794.e4.
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| PubMed | Europe PMC
Y. Kasugai, E. Vogel, H. Hörtnagl, S. Schönherr, E. Paradiso, M. Hauschild, G. Göbel, I. Milenkovic, Y. Peterschmitt, R. Tasan, G. Sperk, R. Shigemoto, W. Sieghart, N. Singewald, A. Lüthi, F. Ferraguti, Neuron 104 (2019) 781–794.e4.
2019 | Journal Article | IST-REx-ID: 7100 |
Derivation of the time dependent Gross–Pitaevskii equation in two dimensions
M. Jeblick, N.K. Leopold, P. Pickl, Communications in Mathematical Physics 372 (2019) 1–69.
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M. Jeblick, N.K. Leopold, P. Pickl, Communications in Mathematical Physics 372 (2019) 1–69.
2019 | Journal Article | IST-REx-ID: 7103 |
Non-equilibrium critical dynamics of bursts in θ and δ rhythms as fundamental characteristic of sleep and wake micro-architecture
J.W.J.L. Wang, F. Lombardi, X. Zhang, C. Anaclet, P.C. Ivanov, PLOS Computational Biology 15 (2019).
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| PubMed | Europe PMC
J.W.J.L. Wang, F. Lombardi, X. Zhang, C. Anaclet, P.C. Ivanov, PLOS Computational Biology 15 (2019).
2019 | Journal Article | IST-REx-ID: 7105 |
Persistent and polarized global actin flow is essential for directionality during cell migration
L. Yolland, M. Burki, S. Marcotti, A. Luchici, F.N. Kenny, J.R. Davis, E. Serna-Morales, J. Müller, M.K. Sixt, A. Davidson, W. Wood, L.J. Schumacher, R.G. Endres, M. Miodownik, B.M. Stramer, Nature Cell Biology 21 (2019) 1370–1381.
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| PubMed | Europe PMC
L. Yolland, M. Burki, S. Marcotti, A. Luchici, F.N. Kenny, J.R. Davis, E. Serna-Morales, J. Müller, M.K. Sixt, A. Davidson, W. Wood, L.J. Schumacher, R.G. Endres, M. Miodownik, B.M. Stramer, Nature Cell Biology 21 (2019) 1370–1381.
2019 | Journal Article | IST-REx-ID: 7106 |
PIN-driven auxin transport emerged early in streptophyte evolution
R. Skokan, E. Medvecká, T. Viaene, S. Vosolsobě, M. Zwiewka, K. Müller, P. Skůpa, M. Karady, Y. Zhang, D.P. Janacek, U.Z. Hammes, K. Ljung, T. Nodzyński, J. Petrášek, J. Friml, Nature Plants 5 (2019) 1114–1119.
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| PubMed | Europe PMC
R. Skokan, E. Medvecká, T. Viaene, S. Vosolsobě, M. Zwiewka, K. Müller, P. Skůpa, M. Karady, Y. Zhang, D.P. Janacek, U.Z. Hammes, K. Ljung, T. Nodzyński, J. Petrášek, J. Friml, Nature Plants 5 (2019) 1114–1119.
2019 | Journal Article | IST-REx-ID: 7108 |
Shellability is NP-complete
X. Goaoc, P. Patak, Z. Patakova, M. Tancer, U. Wagner, Journal of the ACM 66 (2019).
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| arXiv
X. Goaoc, P. Patak, Z. Patakova, M. Tancer, U. Wagner, Journal of the ACM 66 (2019).
2019 | Journal Article | IST-REx-ID: 7109
From real-time logic to timed automata
T. Ferrere, O. Maler, D. Ničković, A. Pnueli, Journal of the ACM 66 (2019).
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| DOI
T. Ferrere, O. Maler, D. Ničković, A. Pnueli, Journal of the ACM 66 (2019).
2019 | Journal Article | IST-REx-ID: 7117 |
X-CAD: Optimizing CAD Models with Extended Finite Elements
C. Hafner, C. Schumacher, E. Knoop, T. Auzinger, B. Bickel, M. Bächer, ACM Transactions on Graphics 38 (2019).
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C. Hafner, C. Schumacher, E. Knoop, T. Auzinger, B. Bickel, M. Bächer, ACM Transactions on Graphics 38 (2019).
2019 | Conference Paper | IST-REx-ID: 7122
Gradient compression for communication-limited convex optimization
S. Khirirat, M. Johansson, D.-A. Alistarh, in:, 2018 IEEE Conference on Decision and Control, IEEE, 2019.
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| DOI
S. Khirirat, M. Johansson, D.-A. Alistarh, in:, 2018 IEEE Conference on Decision and Control, IEEE, 2019.
2019 | Journal Article | IST-REx-ID: 7128 |
Common regulatory pathways mediate activity of microRNAs inducing cardiomyocyte proliferation
C. Torrini, R.J. Cubero, E. Dirkx, L. Braga, H. Ali, G. Prosdocimo, M.I. Gutierrez, C. Collesi, D. Licastro, L. Zentilin, M. Mano, S. Zacchigna, M. Vendruscolo, M. Marsili, A. Samal, M. Giacca, Cell Reports 27 (2019) 2759–2771.e5.
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| DOI
| PubMed | Europe PMC
C. Torrini, R.J. Cubero, E. Dirkx, L. Braga, H. Ali, G. Prosdocimo, M.I. Gutierrez, C. Collesi, D. Licastro, L. Zentilin, M. Mano, S. Zacchigna, M. Vendruscolo, M. Marsili, A. Samal, M. Giacca, Cell Reports 27 (2019) 2759–2771.e5.
2019 | Journal Article | IST-REx-ID: 7130 |
Statistical criticality arises in most informative representations
R.J. Cubero, J. Jo, M. Marsili, Y. Roudi, J. Song, Journal of Statistical Mechanics: Theory and Experiment 2019 (2019).
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| arXiv
R.J. Cubero, J. Jo, M. Marsili, Y. Roudi, J. Song, Journal of Statistical Mechanics: Theory and Experiment 2019 (2019).
2019 | Conference Paper | IST-REx-ID: 7136 |
Strong chain rules for min-entropy under few bits spoiled
M. Skórski, in:, 2019 IEEE International Symposium on Information Theory, IEEE, 2019.
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| arXiv
M. Skórski, in:, 2019 IEEE International Symposium on Information Theory, IEEE, 2019.
2019 | Journal Article | IST-REx-ID: 7143 |
Defying gravity: a plant's quest for moisture
S.A. Sinclair, J. Friml, Cell Research 29 (2019) 965–966.
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| PubMed | Europe PMC
S.A. Sinclair, J. Friml, Cell Research 29 (2019) 965–966.
2019 | Journal Article | IST-REx-ID: 7145 |
End-to-end correlated subgap states in hybrid nanowires
G.L.R. Anselmetti, E.A. Martinez, G.C. Ménard, D. Puglia, F.K. Malinowski, J.S. Lee, S. Choi, M. Pendharkar, C.J. Palmstrøm, C.M. Marcus, L. Casparis, A.P. Higginbotham, Physical Review B 100 (2019).
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| arXiv
G.L.R. Anselmetti, E.A. Martinez, G.C. Ménard, D. Puglia, F.K. Malinowski, J.S. Lee, S. Choi, M. Pendharkar, C.J. Palmstrøm, C.M. Marcus, L. Casparis, A.P. Higginbotham, Physical Review B 100 (2019).