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497 Publications
2019 | Journal Article | IST-REx-ID: 6105 |

A multi-faceted approach testing the effects of previous bacterial exposure on resistance and tolerance
M. Kutzer, J. Kurtz, S.A.O. Armitage, Journal of Animal Ecology 88 (2019) 566–578.
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M. Kutzer, J. Kurtz, S.A.O. Armitage, Journal of Animal Ecology 88 (2019) 566–578.
2019 | Conference Paper | IST-REx-ID: 6163
Rhombic dodecahedron grid—coordinate system and 3D digital object definitions
R. Biswas, G. Largeteau-Skapin, R. Zrour, E. Andres, in:, 21st IAPR International Conference on Discrete Geometry for Computer Imagery, Springer Berlin Heidelberg, Berlin, Heidelberg, 2019, pp. 27–37.
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| DOI
R. Biswas, G. Largeteau-Skapin, R. Zrour, E. Andres, in:, 21st IAPR International Conference on Discrete Geometry for Computer Imagery, Springer Berlin Heidelberg, Berlin, Heidelberg, 2019, pp. 27–37.
2019 | Journal Article | IST-REx-ID: 6174 |

Kosterlitz-Thouless scaling at many-body localization phase transitions
P.T. Dumitrescu, A. Goremykina, S.A. Parameswaran, M. Serbyn, R. Vasseur, Physical Review B 99 (2019).
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P.T. Dumitrescu, A. Goremykina, S.A. Parameswaran, M. Serbyn, R. Vasseur, Physical Review B 99 (2019).
2019 | Thesis | IST-REx-ID: 6179 |

From Dyson to Pearcey: Universal statistics in random matrix theory
D.J. Schröder, From Dyson to Pearcey: Universal Statistics in Random Matrix Theory, IST Austria, 2019.
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D.J. Schröder, From Dyson to Pearcey: Universal Statistics in Random Matrix Theory, IST Austria, 2019.
2019 | Journal Article | IST-REx-ID: 6182 |

Random matrices with slow correlation decay
L. Erdös, T.H. Krüger, D.J. Schröder, Forum of Mathematics, Sigma 7 (2019).
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| arXiv
L. Erdös, T.H. Krüger, D.J. Schröder, Forum of Mathematics, Sigma 7 (2019).
2019 | Journal Article | IST-REx-ID: 6186 |

Cusp universality for random matrices, II: The real symmetric case
G. Cipolloni, L. Erdös, T.H. Krüger, D.J. Schröder, Pure and Applied Analysis 1 (2019) 615–707.
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G. Cipolloni, L. Erdös, T.H. Krüger, D.J. Schröder, Pure and Applied Analysis 1 (2019) 615–707.
2019 | Journal Article | IST-REx-ID: 6189 |

Transition to turbulence in particle laden flows
N. Agrawal, G.H. Choueiri, B. Hof, Physical Review Letters 122 (2019).
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N. Agrawal, G.H. Choueiri, B. Hof, Physical Review Letters 122 (2019).
2019 | Journal Article | IST-REx-ID: 6190 |

CCL2 is a vascular permeability factor inducing CCR2-dependent endothelial retraction during lung metastasis
M. Roblek, D. Protsyuk, P.F. Becker, C. Stefanescu, C. Gorzelanny, J.F. Glaus Garzon, L. Knopfova, M. Heikenwalder, B. Luckow, S.W. Schneider, L. Borsig, Molecular Cancer Research 17 (2019) 783–793.
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M. Roblek, D. Protsyuk, P.F. Becker, C. Stefanescu, C. Gorzelanny, J.F. Glaus Garzon, L. Knopfova, M. Heikenwalder, B. Luckow, S.W. Schneider, L. Borsig, Molecular Cancer Research 17 (2019) 783–793.
2019 | Journal Article | IST-REx-ID: 6191 |

Theory of mechanochemical patterning in biphasic biological tissues
P. Recho, A. Hallou, E.B. Hannezo, Proceedings of the National Academy of Sciences of the United States of America 116 (2019) 5344–5349.
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P. Recho, A. Hallou, E.B. Hannezo, Proceedings of the National Academy of Sciences of the United States of America 116 (2019) 5344–5349.
2019 | Journal Article | IST-REx-ID: 6194 |

The entorhinal cognitive map is attracted to goals
C.N. Boccara, M. Nardin, F. Stella, J. O’Neill, J.L. Csicsvari, Science 363 (2019) 1443–1447.
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C.N. Boccara, M. Nardin, F. Stella, J. O’Neill, J.L. Csicsvari, Science 363 (2019) 1443–1447.
2019 | Journal Article | IST-REx-ID: 6230 |

Why structure matters
N.H. Barton, J. Hermisson, M. Nordborg, ELife 8 (2019).
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N.H. Barton, J. Hermisson, M. Nordborg, ELife 8 (2019).
2019 | Journal Article | IST-REx-ID: 6232 |

Boundary regularity of stochastic PDEs
M. Gerencser, Annals of Probability 47 (2019) 804–834.
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| arXiv
M. Gerencser, Annals of Probability 47 (2019) 804–834.
2019 | Journal Article | IST-REx-ID: 6240 |

Location of the spectrum of Kronecker random matrices
J. Alt, L. Erdös, T.H. Krüger, Y. Nemish, Annales de l’institut Henri Poincare 55 (2019) 661–696.
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J. Alt, L. Erdös, T.H. Krüger, Y. Nemish, Annales de l’institut Henri Poincare 55 (2019) 661–696.
2019 | Journal Article | IST-REx-ID: 6259 |

TMK1-mediated auxin signalling regulates differential growth of the apical hook
M. Cao, R. Chen, P. Li, Y. Yu, R. Zheng, D. Ge, W. Zheng, X. Wang, Y. Gu, Z. Gelová, J. Friml, H. Zhang, R. Liu, J. He, T. Xu, Nature 568 (2019) 240–243.
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M. Cao, R. Chen, P. Li, Y. Yu, R. Zheng, D. Ge, W. Zheng, X. Wang, Y. Gu, Z. Gelová, J. Friml, H. Zhang, R. Liu, J. He, T. Xu, Nature 568 (2019) 240–243.
2019 | Journal Article | IST-REx-ID: 6261 |

Nitrate modulates the differentiation of root distal stem cells
Y. Wang, Z. Gong, J. Friml, J. Zhang, Plant Physiology 180 (2019) 22–25.
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Y. Wang, Z. Gong, J. Friml, J. Zhang, Plant Physiology 180 (2019) 22–25.
2019 | Journal Article | IST-REx-ID: 6262 |

Genetic screen for factors mediating PIN polarization in gravistimulated Arabidopsis thaliana hypocotyls
H. Rakusová, H. Han, P. Valošek, J. Friml, The Plant Journal 98 (2019) 1048–1059.
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H. Rakusová, H. Han, P. Valošek, J. Friml, The Plant Journal 98 (2019) 1048–1059.
2019 | Journal Article | IST-REx-ID: 6297 |

An integrated assay to probe endothelial glycocalyx-blood cell interactions under flow in mechanically and biochemically well-defined environments
H.S. Davies, N.S. Baranova, N. El Amri, L. Coche-Guérente, C. Verdier, L. Bureau, R.P. Richter, D. Débarre, Matrix Biology 78–79 (2019) 47–59.
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H.S. Davies, N.S. Baranova, N. El Amri, L. Coche-Guérente, C. Verdier, L. Bureau, R.P. Richter, D. Débarre, Matrix Biology 78–79 (2019) 47–59.
2019 | Journal Article | IST-REx-ID: 6310 |

Counting rational points on biquadratic hypersurfaces
T.D. Browning, L.Q. Hu, Advances in Mathematics 349 (2019) 920–940.
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| arXiv
T.D. Browning, L.Q. Hu, Advances in Mathematics 349 (2019) 920–940.
2019 | Journal Article | IST-REx-ID: 6338 |

Hippocampal reactivation of random trajectories resembling Brownian diffusion
F. Stella, P. Baracskay, J. O’Neill, J.L. Csicsvari, Neuron 102 (2019) 450–461.
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F. Stella, P. Baracskay, J. O’Neill, J.L. Csicsvari, Neuron 102 (2019) 450–461.
2019 | Journal Article | IST-REx-ID: 6343
Toward high-resolution in situ structural biology with cryo-electron tomography and subtomogram averaging
F.K. Schur, Current Opinion in Structural Biology 58 (2019) 1–9.
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| DOI
F.K. Schur, Current Opinion in Structural Biology 58 (2019) 1–9.
2019 | Journal Article | IST-REx-ID: 6348 |

Resonant electro-optic frequency comb
A.R. Rueda Sanchez, F. Sedlmeir, M. Kumari, G. Leuchs, H.G.L. Schwefel, Nature 568 (2019) 378–381.
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A.R. Rueda Sanchez, F. Sedlmeir, M. Kumari, G. Leuchs, H.G.L. Schwefel, Nature 568 (2019) 378–381.
2019 | Journal Article | IST-REx-ID: 6352 |

Protective properties of the cultured stem cell proteome studied in an animal model of acetaminophen-induced acute liver failure
A.A. Temnov, K.A. Rogov, A.N. Sklifas, E.V. Klychnikova, M. Hartl, K. Djinovic-Carugo, A. Charnagalov, Molecular Biology Reports (2019).
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A.A. Temnov, K.A. Rogov, A.N. Sklifas, E.V. Klychnikova, M. Hartl, K. Djinovic-Carugo, A. Charnagalov, Molecular Biology Reports (2019).
2019 | Journal Article | IST-REx-ID: 6366 |

A mobile auxin signal connects temperature sensing in cotyledons with growth responses in hypocotyls
J. Bellstaedt, J. Trenner, R. Lippmann, Y. Poeschl, X. Zhang, J. Friml, M. Quint, C. Delker, Plant Physiology 180 (2019) 757–766.
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J. Bellstaedt, J. Trenner, R. Lippmann, Y. Poeschl, X. Zhang, J. Friml, M. Quint, C. Delker, Plant Physiology 180 (2019) 757–766.
2019 | Journal Article | IST-REx-ID: 6377
Disruption of endocytosis through chemical inhibition of clathrin heavy chain function
Dejonghe W, Sharma I, Denoo B, De Munck S, Lu Q, Mishev K, Bulut H, Mylle E, De Rycke R, Vasileva MK, Savatin DV, Nerinckx W, Staes A, Drozdzecki A, Audenaert D, Yperman K, Madder A, Friml J, Van Damme D, Gevaert K, Haucke V, Savvides SN, Winne J, Russinova E. 2019. Disruption of endocytosis through chemical inhibition of clathrin heavy chain function. Nature Chemical Biology. 15(6), 641–649.
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Dejonghe W, Sharma I, Denoo B, De Munck S, Lu Q, Mishev K, Bulut H, Mylle E, De Rycke R, Vasileva MK, Savatin DV, Nerinckx W, Staes A, Drozdzecki A, Audenaert D, Yperman K, Madder A, Friml J, Van Damme D, Gevaert K, Haucke V, Savvides SN, Winne J, Russinova E. 2019. Disruption of endocytosis through chemical inhibition of clathrin heavy chain function. Nature Chemical Biology. 15(6), 641–649.
2019 | Journal Article | IST-REx-ID: 6412 |

Canonical PRC1 controls sequence-independent propagation of Polycomb-mediated gene silencing
H.F. Moussa, D. Bsteh, R. Yelagandula, C. Pribitzer, K. Stecher, K. Bartalska, L. Michetti, J. Wang, J.A. Zepeda-Martinez, U. Elling, J.I. Stuckey, L.I. James, S.V. Frye, O. Bell, Nature Communications 10 (2019).
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H.F. Moussa, D. Bsteh, R. Yelagandula, C. Pribitzer, K. Stecher, K. Bartalska, L. Michetti, J. Wang, J.A. Zepeda-Martinez, U. Elling, J.I. Stuckey, L.I. James, S.V. Frye, O. Bell, Nature Communications 10 (2019).
2019 | Journal Article | IST-REx-ID: 6413 |

Phase-field simulation of core-annular pipe flow
B. Song, C. Plana, J.M. Lopez Alonso, M. Avila, International Journal of Multiphase Flow 117 (2019) 14–24.
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| arXiv
B. Song, C. Plana, J.M. Lopez Alonso, M. Avila, International Journal of Multiphase Flow 117 (2019) 14–24.
2019 | Journal Article | IST-REx-ID: 6415
Pathogens and disease defense of invasive ants
S. Cremer, Current Opinion in Insect Science 33 (2019) 63–68.
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| DOI
S. Cremer, Current Opinion in Insect Science 33 (2019) 63–68.
2019 | Journal Article | IST-REx-ID: 6418 |

Sex-biased gene expression and dosage compensation on the Artemia franciscana Z-chromosome
A.K. Huylmans, M.A. Toups, A. Macon, W.J. Gammerdinger, B. Vicoso, Genome Biology and Evolution 11 (2019) 1033–1044.
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A.K. Huylmans, M.A. Toups, A. Macon, W.J. Gammerdinger, B. Vicoso, Genome Biology and Evolution 11 (2019) 1033–1044.
2019 | Journal Article | IST-REx-ID: 6419 |

An experimental assay of the interactions of amino acids from orthologous sequences shaping a complex fitness landscape
V. Pokusaeva, D.R. Usmanova, E.V. Putintseva, L. Espinar, K. Sarkisyan, A.S. Mishin, N.S. Bogatyreva, D. Ivankov, A. Akopyan, S. Avvakumov, I.S. Povolotskaya, G.J. Filion, L.B. Carey, F. Kondrashov, PLoS Genetics 15 (2019).
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V. Pokusaeva, D.R. Usmanova, E.V. Putintseva, L. Espinar, K. Sarkisyan, A.S. Mishin, N.S. Bogatyreva, D. Ivankov, A. Akopyan, S. Avvakumov, I.S. Povolotskaya, G.J. Filion, L.B. Carey, F. Kondrashov, PLoS Genetics 15 (2019).
2019 | Conference Paper | IST-REx-ID: 6428 |

Interface-aware signal temporal logic
T. Ferrere, D. Nickovic, A. Donzé, H. Ito, J. Kapinski, in:, Proceedings of the 2019 22nd ACM International Conference on Hybrid Systems: Computation and Control, ACM, 2019, pp. 57–66.
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T. Ferrere, D. Nickovic, A. Donzé, H. Ito, J. Kapinski, in:, Proceedings of the 2019 22nd ACM International Conference on Hybrid Systems: Computation and Control, ACM, 2019, pp. 57–66.
2019 | Conference Paper | IST-REx-ID: 6430 |

Adaptively secure proxy re-encryption
G. Fuchsbauer, C. Kamath Hosdurg, K. Klein, K.Z. Pietrzak, in:, Springer Nature, 2019, pp. 317–346.
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G. Fuchsbauer, C. Kamath Hosdurg, K. Klein, K.Z. Pietrzak, in:, Springer Nature, 2019, pp. 317–346.
2019 | Journal Article | IST-REx-ID: 6442 |

Fundamental solutions for water wave animation
C. Schreck, C. Hafner, C.J. Wojtan, ACM Transactions on Graphics 38 (2019).
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C. Schreck, C. Hafner, C.J. Wojtan, ACM Transactions on Graphics 38 (2019).
2019 | Journal Article | IST-REx-ID: 6451 |

EGFR controls hair shaft differentiation in a p53-independent manner
N. Amberg, P.A. Sotiropoulou, G. Heller, B.M. Lichtenberger, M. Holcmann, B. Camurdanoglu, T. Baykuscheva-Gentscheva, C. Blanpain, M. Sibilia, IScience 15 (2019) 243–256.
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N. Amberg, P.A. Sotiropoulou, G. Heller, B.M. Lichtenberger, M. Holcmann, B. Camurdanoglu, T. Baykuscheva-Gentscheva, C. Blanpain, M. Sibilia, IScience 15 (2019) 243–256.
2019 | Journal Article | IST-REx-ID: 6454 |

Adult neural stem cells and multiciliated ependymal cells share a common lineage regulated by the Geminin family members
G. Ortiz-Álvarez, M. Daclin, A. Shihavuddin, P. Lansade, A. Fortoul, M. Faucourt, S. Clavreul, M. Lalioti, S. Taraviras, S. Hippenmeyer, J. Livet, A. Meunier, A. Genovesio, N. Spassky, Neuron 102 (2019) 159–172.e7.
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| PubMed | Europe PMC
G. Ortiz-Álvarez, M. Daclin, A. Shihavuddin, P. Lansade, A. Fortoul, M. Faucourt, S. Clavreul, M. Lalioti, S. Taraviras, S. Hippenmeyer, J. Livet, A. Meunier, A. Genovesio, N. Spassky, Neuron 102 (2019) 159–172.e7.
2019 | Journal Article | IST-REx-ID: 6455 |

Temporal patterning of apical progenitors and their daughter neurons in the developing neocortex
L. Telley, G. Agirman, J. Prados, N. Amberg, S. Fièvre, P. Oberst, G. Bartolini, I. Vitali, C. Cadilhac, S. Hippenmeyer, L. Nguyen, A. Dayer, D. Jabaudon, Science 364 (2019).
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L. Telley, G. Agirman, J. Prados, N. Amberg, S. Fièvre, P. Oberst, G. Bartolini, I. Vitali, C. Cadilhac, S. Hippenmeyer, L. Nguyen, A. Dayer, D. Jabaudon, Science 364 (2019).
2019 | Conference Paper | IST-REx-ID: 6462 |

Run-time optimization for learned controllers through quantitative games
G. Avni, R. Bloem, K. Chatterjee, T.A. Henzinger, B. Konighofer, S. Pranger, in:, 31st International Conference on Computer-Aided Verification, Springer, 2019, pp. 630–649.
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G. Avni, R. Bloem, K. Chatterjee, T.A. Henzinger, B. Konighofer, S. Pranger, in:, 31st International Conference on Computer-Aided Verification, Springer, 2019, pp. 630–649.
2019 | Journal Article | IST-REx-ID: 6465 |

A modular degron library for synthetic circuits in mammalian cells
H. Chassin, M. Müller, M. Tigges, L. Scheller, M. Lang, M. Fussenegger, Nature Communications 10 (2019).
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H. Chassin, M. Müller, M. Tigges, L. Scheller, M. Lang, M. Fussenegger, Nature Communications 10 (2019).
2019 | Journal Article | IST-REx-ID: 6466 |

Breaking down barriers in morning glories
D. Field, C. Fraisse, Molecular Ecology 28 (2019) 1579–1581.
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D. Field, C. Fraisse, Molecular Ecology 28 (2019) 1579–1581.
2019 | Journal Article | IST-REx-ID: 6467 |

The distribution of epistasis on simple fitness landscapes
C. Fraisse, J.J. Welch, Biology Letters 15 (2019).
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C. Fraisse, J.J. Welch, Biology Letters 15 (2019).
2019 | Journal Article | IST-REx-ID: 6470 |

Improved spike inference accuracy by estimating the peak amplitude of unitary [Ca2+] transients in weakly GCaMP6f-expressing hippocampal pyramidal cells
T. Éltes, M. Szoboszlay, M.K. Szigeti, Z. Nusser, Journal of Physiology 597 (2019) 2925–2947.
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T. Éltes, M. Szoboszlay, M.K. Szigeti, Z. Nusser, Journal of Physiology 597 (2019) 2925–2947.
2019 | Thesis | IST-REx-ID: 6473 |

Estimating information flow in single cells
S.A. Cepeda Humerez, Estimating Information Flow in Single Cells, IST Austria, 2019.
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S.A. Cepeda Humerez, Estimating Information Flow in Single Cells, IST Austria, 2019.
2019 | Journal Article | IST-REx-ID: 6477 |

Colloquium: Many-body localization, thermalization, and entanglement
D.A. Abanin, E. Altman, I. Bloch, M. Serbyn, Reviews of Modern Physics 91 (2019).
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| DOI
| arXiv
D.A. Abanin, E. Altman, I. Bloch, M. Serbyn, Reviews of Modern Physics 91 (2019).
2019 | Conference Paper | IST-REx-ID: 6482 |

KS(conf): A light-weight test if a ConvNet operates outside of Its specifications
R. Sun, C. Lampert, in:, Springer Nature, 2019, pp. 244–259.
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| arXiv
R. Sun, C. Lampert, in:, Springer Nature, 2019, pp. 244–259.
2019 | Conference Poster | IST-REx-ID: 6485
Lock-free channels for programming via communicating sequential processes
N. Koval, D.-A. Alistarh, R. Elizarov, Lock-Free Channels for Programming via Communicating Sequential Processes, ACM Press, 2019.
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N. Koval, D.-A. Alistarh, R. Elizarov, Lock-Free Channels for Programming via Communicating Sequential Processes, ACM Press, 2019.
2019 | Conference Paper | IST-REx-ID: 6493 |

Membership-based synthesis of linear hybrid automata
M. Garcia Soto, T.A. Henzinger, C. Schilling, L. Zeleznik, in:, 31st International Conference on Computer-Aided Verification, Springer, 2019, pp. 297–314.
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M. Garcia Soto, T.A. Henzinger, C. Schilling, L. Zeleznik, in:, 31st International Conference on Computer-Aided Verification, Springer, 2019, pp. 297–314.
2019 | Journal Article | IST-REx-ID: 65 |

Entropy solutions for stochastic porous media equations
K. Dareiotis, M. Gerencser, B. Gess, Journal of Differential Equations 266 (2019) 3732–3763.
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| arXiv
K. Dareiotis, M. Gerencser, B. Gess, Journal of Differential Equations 266 (2019) 3732–3763.
2019 | Journal Article | IST-REx-ID: 6504 |

Auxin-mediated statolith production for root gravitropism
Y. Zhang, P. He, X. Ma, Z. Yang, C. Pang, J. Yu, G. Wang, J. Friml, G. Xiao, New Phytologist 224 (2019) 761–774.
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| PubMed | Europe PMC
Y. Zhang, P. He, X. Ma, Z. Yang, C. Pang, J. Yu, G. Wang, J. Friml, G. Xiao, New Phytologist 224 (2019) 761–774.
2019 | Journal Article | IST-REx-ID: 6506 |

Chance and pleiotropy dominate genetic diversity in complex bacterial environments
L. Noda-García, D. Davidi, E. Korenblum, A. Elazar, E. Putintseva, A. Aharoni, D.S. Tawfik, Nature Microbiology 4 (2019) 1221–1230.
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L. Noda-García, D. Davidi, E. Korenblum, A. Elazar, E. Putintseva, A. Aharoni, D.S. Tawfik, Nature Microbiology 4 (2019) 1221–1230.
2019 | Journal Article | IST-REx-ID: 6511 |

Local single ring theorem on optimal scale
Z. Bao, L. Erdös, K. Schnelli, Annals of Probability 47 (2019) 1270–1334.
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| arXiv
Z. Bao, L. Erdös, K. Schnelli, Annals of Probability 47 (2019) 1270–1334.
2019 | Journal Article | IST-REx-ID: 6513 |

Tracing the origin of adult intestinal stem cells
J. Guiu, E.B. Hannezo, S. Yui, S. Demharter, S. Ulyanchenko, M. Maimets, A. Jørgensen, S. Perlman, L. Lundvall, L.S. Mamsen, A. Larsen, R.H. Olesen, C.Y. Andersen, L.L. Thuesen, K.J. Hare, T.H. Pers, K. Khodosevich, B.D. Simons, K.B. Jensen, Nature 570 (2019) 107–111.
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J. Guiu, E.B. Hannezo, S. Yui, S. Demharter, S. Ulyanchenko, M. Maimets, A. Jørgensen, S. Perlman, L. Lundvall, L.S. Mamsen, A. Larsen, R.H. Olesen, C.Y. Andersen, L.L. Thuesen, K.J. Hare, T.H. Pers, K. Khodosevich, B.D. Simons, K.B. Jensen, Nature 570 (2019) 107–111.