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488 Publications


2017 | Journal Article | IST-REx-ID: 794 | OA
C-planarity of embedded cyclic c-graphs
R. Fulek, Computational Geometry: Theory and Applications 66 (2017) 1–13.
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2017 | Journal Article | IST-REx-ID: 795 | OA
Unified Hanani Tutte theorem
R. Fulek, J. Kynčl, D. Pálvölgyi, Electronic Journal of Combinatorics 24 (2017).
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2017 | Journal Article | IST-REx-ID: 804 | OA
Overcoming the limitations of the MARTINI force field in simulations of polysaccharides
P.S. Schmalhorst, F. Deluweit, R. Scherrers, C.-P.J. Heisenberg, M.K. Sikora, Journal of Chemical Theory and Computation 13 (2017) 5039–5053.
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2017 | Journal Article | IST-REx-ID: 805
The E2A splice variant E47 regulates the differentiation of projection neurons via p57(KIP2) during cortical development
S. Pfurr, Y. Chu, C. Bohrer, F. Greulich, R.J. Beattie, K. Mammadzada, M. Hils, S. Arnold, V. Taylor, K. Schachtrup, N.H. Uhlenhaut, C. Schachtrup, Development 144 (2017) 3917–3931.
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2017 | Journal Article | IST-REx-ID: 807 | OA
Der Springer Compact-Deal – Ein erster Einblick in die Evaluierung einer Offsetting-Vereinbarung
M. Andrae, M. Villányi, Mitteilungen Der Vereinigung Österreichischer Bibliothekarinnen Und Bibliothekare 70 (2017) 274–280.
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2017 | Journal Article | IST-REx-ID: 8075 | OA
Mapping the function of neuronal ion channels in model and experiment
W.F. Podlaski, A. Seeholzer, L.N. Groschner, G. Miesenböck, R. Ranjan, T.P. Vogels, ELife 6 (2017).
View | Files available | DOI | PubMed | Europe PMC
 

2017 | Journal Article | IST-REx-ID: 817 | OA
Efficient 3D-CTF correction for cryo-electron tomography using NovaCTF improves subtomogram averaging resolution to 3.4Å
B. Turoňová, F.K. Schur, W. Wan, J. Briggs, Journal of Structural Biology 199 (2017) 187–195.
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2017 | Journal Article | IST-REx-ID: 666 | OA
Noisy response to antibiotic stress predicts subsequent single cell survival in an acidic environment
K. Mitosch, G. Rieckh, M.T. Bollenbach, Cell Systems 4 (2017) 393–403.
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2017 | Thesis | IST-REx-ID: 818 | OA
Timing, variability and cross-protection in bacteria – insights from dynamic gene expression responses to antibiotics
K. Mitosch, Timing, Variability and Cross-Protection in Bacteria – Insights from Dynamic Gene Expression Responses to Antibiotics, IST Austria, 2017.
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2017 | Thesis | IST-REx-ID: 821 | OA
Algorithmic advances in program analysis and their applications
A. Pavlogiannis, Algorithmic Advances in Program Analysis and Their Applications, IST Austria, 2017.
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2017 | Journal Article | IST-REx-ID: 822 | OA
Interaction networks, ecological stability, and collective antibiotic tolerance in polymicrobial infections
M. de Vos, M.P. Zagórski, A. Mcnally, M.T. Bollenbach, PNAS 114 (2017) 10666–10671.
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2017 | Journal Article | IST-REx-ID: 823 | OA
Phase transitions in integer linear problems
S. Colabrese, D. De Martino, L. Leuzzi, E. Marinari, Journal of Statistical Mechanics: Theory and Experiment 2017 (2017).
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2017 | Journal Article | IST-REx-ID: 8235 | OA
Development of a radiolabeled caninized anti-EGFR antibody for comparative oncology trials
J. Singer, N. Berroterán-Infante, C. Rami-Mark, M. Dumanic, M. Matz, M. Willmann, F. Andreae, J. Singer, W. Wadsak, M. Mitterhauser, E. Jensen-Jarolim, Oncotarget 8 (2017) 83128–83141.
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2017 | Journal Article | IST-REx-ID: 8236 | OA
AllergoOncology - the impact of allergy in oncology: EAACI position paper
E. Jensen-Jarolim, H.J. Bax, R. Bianchini, M. Capron, C. Corrigan, M. Castells, D. Dombrowicz, T.R. Daniels-Wells, J. Singer, E. Fiebiger, S. Gatault, H.J. Gould, J. Janda, D.H. Josephs, P. Karagiannis, F. Levi-Schaffer, A. Meshcheryakova, D. Mechtcheriakova, Y. Mekori, F. Mungenast, E.A. Nigro, M.L. Penichet, F. Redegeld, L. Saul, J. Singer, J.F. Spicer, A.G. Siccardi, E. Spillner, M.C. Turner, E. Untersmayr, L. Vangelista, S.N. Karagiannis, Allergy 72 (2017) 866–887.
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2017 | Journal Article | IST-REx-ID: 8237 | OA
Functionally active Fc mutant antibodies recognizing cancer antigens generated rapidly at high yields
K.M. Ilieva, J. Singer, D.Y. Achkova, T.S. Dodev, S. Mele, S. Crescioli, H.J. Bax, A. Cheung, P. Karagiannis, I. Correa, M. Figini, R. Marlow, D.H. Josephs, A.J. Beavil, J. Maher, J.F. Spicer, E. Jensen-Jarolim, A.N. Tutt, S.N. Karagiannis, Frontiers in Immunology 8 (2017).
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2017 | Journal Article | IST-REx-ID: 8239 | OA
Janus-faced Acrolein prevents allergy but accelerates tumor growth by promoting immunoregulatory Foxp3+ cells: Mouse model for passive respiratory exposure
F. Roth-Walter, C. Bergmayr, S. Meitz, S. Buchleitner, C. Stremnitzer, J. Singer, A. Moskovskich, M.A. Müller, G.A. Roth, K. Manzano-Szalai, Z. Dvorak, A. Neunkirchner, E. Jensen-Jarolim, Scientific Reports 7 (2017).
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2017 | Journal Article | IST-REx-ID: 824 | OA
Heteroclinic path to spatially localized chaos in pipe flow
N.B. Budanur, B. Hof, Journal of Fluid Mechanics 827 (2017).
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2017 | Journal Article | IST-REx-ID: 8240 | OA
Long term storage in liquid nitrogen leads to only minor phenotypic and gene expression changes in the mammary carcinoma model cell line BT474
J. Singer, T.W. Grunt, E. Jensen-Jarolim, J. Singer, Oncotarget 8 (2017) 35076–35087.
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2017 | Journal Article | IST-REx-ID: 825 | OA
Metadata for research data in practice
B. Petritsch, Mitteilungen Der Vereinigung Österreichischer Bibliothekarinnen & Bibliothekare 70 (2017) 200–207.
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2017 | Conference Paper | IST-REx-ID: 8301 | OA
CHAINIAC: Proactive software-update transparency via collectively signed skipchains and verified builds
K. Nikitin, E. Kokoris Kogias, P. Jovanovic, L. Gasser, N. Gailly, I. Khoffi, J. Cappos, B. Ford, in:, Proceedings of the 26th USENIX Conference on Security Symposium, USENIX Association, 2017, pp. 1271–1287.
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2017 | Conference Paper | IST-REx-ID: 8306 | OA
Scalable bias-resistant distributed randomness
E. Syta, P. Jovanovic, E. Kokoris Kogias, N. Gailly, L. Gasser, I. Khoffi, M.J. Fischer, B. Ford, in:, 2017 IEEE Symposium on Security and Privacy, IEEE, 2017, pp. 444–460.
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2017 | Conference Paper | IST-REx-ID: 559 | OA
Beyond Hellman’s time-memory trade-offs with applications to proofs of space
H.M. Abusalah, J.F. Alwen, B. Cohen, D. Khilko, K.Z. Pietrzak, L. Reyzin, in:, Springer, 2017, pp. 357–379.
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2017 | Journal Article | IST-REx-ID: 661 | OA
Friction forces position the neural anlage
M. Smutny, Z. Ákos, S. Grigolon, S. Shamipour, V. Ruprecht, D. Capek, M. Behrndt, E. Papusheva, M. Tada, B. Hof, T. Vicsek, G. Salbreux, C.-P.J. Heisenberg, Nature Cell Biology 19 (2017) 306–317.
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2017 | Thesis | IST-REx-ID: 838 | OA
(The exact security of) Message authentication codes
M. Rybar, (The Exact Security of) Message Authentication Codes, IST Austria, 2017.
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2017 | Thesis | IST-REx-ID: 837 | OA
Reactivation of the hippocampal cognitive map in goal-directed spatial tasks
H. Xu, Reactivation of the Hippocampal Cognitive Map in Goal-Directed Spatial Tasks, IST Austria, 2017.
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2017 | Conference Paper | IST-REx-ID: 1001 | OA
CurveUps: Shaping objects from flat plates with tension-actuated curvature
R. Guseinov, E. Miguel, B. Bickel, in:, ACM, 2017.
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2017 | Journal Article | IST-REx-ID: 6196 | OA
The exact security of PMAC
P. Gazi, K.Z. Pietrzak, M. Rybar, IACR Transactions on Symmetric Cryptology 2016 (2017) 145–161.
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2017 | Journal Article | IST-REx-ID: 8444
Mitochondrial ADP/ATP carrier in dodecylphosphocholine binds cardiolipins with non-native affinity
F. Dehez, P. Schanda, M.S. King, E.R.S. Kunji, C. Chipot, Biophysical Journal 113 (2017) 2311–2315.
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2017 | Journal Article | IST-REx-ID: 8445
Slow conformational exchange and overall rocking motion in ubiquitin protein crystals
V. Kurauskas, S.A. Izmailov, O.N. Rogacheva, A. Hessel, I. Ayala, J. Woodhouse, A. Shilova, Y. Xue, T. Yuwen, N. Coquelle, J.-P. Colletier, N.R. Skrynnikov, P. Schanda, Nature Communications 8 (2017).
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2017 | Journal Article | IST-REx-ID: 8446
Solid‐state NMR H–N–(C)–H and H–N–C–C 3D/4D correlation experiments for resonance assignment of large proteins
H. Fraga, C. Arnaud, D.F. Gauto, M. Audin, V. Kurauskas, P. Macek, C. Krichel, J. Guan, J. Boisbouvier, R. Sprangers, C. Breyton, P. Schanda, ChemPhysChem 18 (2017) 2697–2703.
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2017 | Journal Article | IST-REx-ID: 8447
Protein conformational dynamics studied by 15N and 1HR1ρ relaxation dispersion: Application to wild-type and G53A ubiquitin crystals
D.F. Gauto, A. Hessel, P. Rovó, V. Kurauskas, R. Linser, P. Schanda, Solid State Nuclear Magnetic Resonance 87 (2017) 86–95.
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2017 | Journal Article | IST-REx-ID: 8448
Optimized fast mixing device for real-time NMR applications
R. Franco, A. Favier, P. Schanda, B. Brutscher, Journal of Magnetic Resonance 281 (2017) 125–129.
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2017 | Journal Article | IST-REx-ID: 8449
RNA binding and chaperone activity of the E.coli cold-shock protein CspA
E. Rennella, T. Sára, M. Juen, C. Wunderlich, L. Imbert, Z. Solyom, A. Favier, I. Ayala, K. Weinhäupl, P. Schanda, R. Konrat, C. Kreutz, B. Brutscher, Nucleic Acids Research 45 (2017) 4255–4268.
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2017 | Book Chapter | IST-REx-ID: 8450
Methyl-specific isotope labeling strategies for NMR studies of membrane proteins
V. Kurauskas, P. Schanda, R. Sounier, in:, Membrane Protein Structure and Function Characterization, Springer Nature, 2017, pp. 109–123.
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2017 | Journal Article | IST-REx-ID: 8451
Proton-detected solid-state NMR spectroscopy of a Zinc diffusion facilitator protein in native nanodiscs
B. Bersch, J.M. Dörr, A. Hessel, J.A. Killian, P. Schanda, Angewandte Chemie International Edition 56 (2017) 2508–2512.
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2017 | Journal Article | IST-REx-ID: 1120 | OA
Angular self-localization of impurities rotating in a bosonic bath
X. Li, R. Seiringer, M. Lemeshko, Physical Review A 95 (2017).
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2017 | Journal Article | IST-REx-ID: 955 | OA
Evolution of new regulatory functions on biophysically realistic fitness landscapes
T. Friedlander, R. Prizak, N.H. Barton, G. Tkačik, Nature Communications 8 (2017).
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2017 | Journal Article | IST-REx-ID: 956 | OA
Gradient flow and entropy inequalities for quantum Markov semigroups with detailed balance
E. Carlen, J. Maas, Journal of Functional Analysis 273 (2017) 1810–1869.
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2017 | Book Chapter | IST-REx-ID: 957
Ancestral protein reconstruction and circular permutation for improving the stability and dynamic range of FRET sensors
B. Clifton, J. Whitfield, I. Sanchez-Romero, M. Herde, C. Henneberger, H.L. Janovjak, C. Jackson, in:, V. Stein (Ed.), Synthetic Protein Switches, Springer, 2017, pp. 71–87.
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2017 | Book Chapter | IST-REx-ID: 958
Method for developing optical sensors using a synthetic dye fluorescent protein FRET pair and computational modeling and assessment
J. Mitchell, W. Zhang, M. Herde, C. Henneberger, H.L. Janovjak, M. O’Mara, C. Jackson, in:, V. Stein (Ed.), Synthetic Protein Switches, Springer, 2017, pp. 89–99.
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2017 | Journal Article | IST-REx-ID: 959 | OA
Scales and multimodal flux distributions in stationary metabolic network models via thermodynamics
D. De Martino, Physical Review E Statistical Nonlinear and Soft Matter Physics 95 (2017) 062419.
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2017 | Journal Article | IST-REx-ID: 960 | OA
Cell polarity in cerebral cortex development - cellular architecture shaped by biochemical networks
A.H. Hansen, C.F. Düllberg, C. Mieck, M. Loose, S. Hippenmeyer, Frontiers in Cellular Neuroscience 11 (2017).
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2017 | Journal Article | IST-REx-ID: 676 | OA
Interstitial fluid osmolarity modulates the action of differential tissue surface tension in progenitor cell segregation during gastrulation
G. Krens, J. Veldhuis, V. Barone, D. Capek, J.-L. Maître, W. Brodland, C.-P.J. Heisenberg, Development 144 (2017) 1798–1806.
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2017 | Journal Article | IST-REx-ID: 735
An effective feedback loop between cell-cell contact duration and morphogen signaling determines cell fate
V. Barone, M. Lang, G. Krens, S. Pradhan, S. Shamipour, K. Sako, M.K. Sikora, C.C. Guet, C.-P.J. Heisenberg, Developmental Cell 43 (2017) 198–211.
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2017 | Conference Paper | IST-REx-ID: 963 | OA
Timed network games with clocks
G. Avni, S. Guha, O. Kupferman, in:, Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2017.
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2017 | Journal Article | IST-REx-ID: 988 | OA
Current-phase relation of ballistic graphene Josephson junctions
G. Nanda, J.L. Aguilera Servin, P. Rakyta, A. Kormányos, R. Kleiner, D. Koelle, K. Watanabe, T. Taniguchi, L. Vandersypen, S. Goswami, Nano Letters 17 (2017) 3396–3401.
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2017 | Conference Paper | IST-REx-ID: 989
Transport based image morphing with intensity modulation
J. Maas, M. Rumpf, S. Simon, in:, F. Lauze, Y. Dong, A. Bjorholm Dahl (Eds.), Springer, 2017, pp. 563–577.
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2017 | Journal Article | IST-REx-ID: 990 | OA
Divergence and evolution of assortative mating in a polygenic trait model of speciation with gene flow
H. Sachdeva, N.H. Barton, Evolution; International Journal of Organic Evolution 71 (2017) 1478–1493.
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2017 | Journal Article | IST-REx-ID: 991
Synaptotagmins: That’s why so many
C. Chen, P.M. Jonas, Neuron 94 (2017) 694–696.
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2017 | Thesis | IST-REx-ID: 992 | OA
Complexity of constraint satisfaction
M. Rolinek, Complexity of Constraint Satisfaction, IST Austria, 2017.
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