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501 Publications


2016 | Journal Article | IST-REx-ID: 100 | OA
Milestones toward Majorana-based quantum computing
D. Aasen, M. Hell, R. Mishmash, A.P. Higginbotham, J. Danon, M. Leijnse, T. Jespersen, J. Folk, C. Marcs, K. Flensberg, J. Alicea, Physical Review X 6 (2016).
[Published Version] View | Files available | DOI
 

2016 | Journal Article | IST-REx-ID: 1008
An orthogonal permease–inducer–repressor feedback loop shows bistability
R. Gnügge, L. Dharmarajan, M. Lang, J. Stelling, ACS Synthetic Biology 5 (2016) 1098–1107.
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2016 | Journal Article | IST-REx-ID: 101 | OA
Exponential protection of zero modes in Majorana islands
S.M. Albrecht, A.P. Higginbotham, T. Jespersen, M. Madsen, F. Kuemmeth, J. Nygård, P. Krogstrup, C. Marcus, Nature 531 (2016) 206–209.
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2016 | Journal Article | IST-REx-ID: 102 | OA
Approaching a topological phase transition in Majorana nanowires
R. Mishmash, D. Aasen, A.P. Higginbotham, J. Alicea, Physical Review B 93 (2016).
[Preprint] View | DOI | Download Preprint (ext.) | arXiv
 

2016 | Journal Article | IST-REx-ID: 10377 | OA
Lipid membrane-mediated attraction between curvature inducing objects
C. van der Wel, A. Vahid, A. Šarić, T. Idema, D. Heinrich, D.J. Kraft, Scientific Reports 6 (2016).
[Published Version] View | Files available | DOI | Download Published Version (ext.) | PubMed | Europe PMC | arXiv
 

2016 | Journal Article | IST-REx-ID: 10376 | OA
Kinetics of spontaneous filament nucleation via oligomers: Insights from theory and simulation
A. Šarić, T.C.T. Michaels, A. Zaccone, T.P.J. Knowles, D. Frenkel, The Journal of Chemical Physics 145 (2016).
[Preprint] View | DOI | Download Preprint (ext.) | PubMed | Europe PMC | arXiv
 

2016 | Journal Article | IST-REx-ID: 10380 | OA
Non-equilibrium simulations of thermally induced electric fields in water
P. Wirnsberger, D. Fijan, A. Šarić, M. Neumann, C. Dellago, D. Frenkel, The Journal of Chemical Physics 144 (2016).
[Preprint] View | DOI | Download Preprint (ext.) | PubMed | Europe PMC | arXiv
 

2016 | Journal Article | IST-REx-ID: 10381 | OA
Melting transition in lipid vesicles functionalised by mobile DNA linkers
S.J. Bachmann, J. Kotar, L. Parolini, A. Šarić, P. Cicuta, L. Di Michele, B.M. Mognetti, Soft Matter 12 (2016) 7804–7817.
[Preprint] View | DOI | Download Preprint (ext.) | PubMed | Europe PMC | arXiv
 

2016 | Journal Article | IST-REx-ID: 10378 | OA
Physical determinants of the self-replication of protein fibrils
A. Šarić, A.K. Buell, G. Meisl, T.C.T. Michaels, C.M. Dobson, S. Linse, T.P.J. Knowles, D. Frenkel, Nature Physics 12 (2016) 874–880.
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2016 | Journal Article | IST-REx-ID: 1057
Coordinate-targeted fluorescence nanoscopy with multiple off states
J.G. Danzl, S. Sidenstein, C. Gregor, N. Urban, P. Ilgen, S. Jakobs, S. Hell, Nature Photonics 10 (2016) 122–128.
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2016 | Journal Article | IST-REx-ID: 1059
Fluorescent rhodamines and fluorogenic carbopyronines for super-resolution STED microscopy in living cells
A. Butkevich, G. Mitronova, S. Sidenstein, J. Klocke, D. Kamin, D. Meineke, E. D’Este, P. Kraemer, J.G. Danzl, V. Belov, S. Hell, Angewandte Chemie - International Edition 55 (2016) 3290–3294.
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2016 | Journal Article | IST-REx-ID: 1060
Multicolour multilevel STED nanoscopy of actin/spectrin organization at synapses
S. Sidenstein, E. D’Este, M. Böhm, J.G. Danzl, V. Belov, S. Hell, Scientific Reports 6 (2016) 1–8.
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2016 | Conference Paper | IST-REx-ID: 1068 | OA
Conditionally optimal algorithms for generalized Büchi Games
K. Chatterjee, W. Dvorák, M.H. Henzinger, V. Loitzenbauer, in:, Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2016.
[Published Version] View | Files available | DOI
 

2016 | Conference Paper | IST-REx-ID: 1069 | OA
On the skolem problem for continuous linear dynamical systems
V.K. Chonev, J. Ouaknine, J. Worrell, in:, Schloss Dagstuhl- Leibniz-Zentrum fur Informatik, 2016.
[Published Version] View | Files available | DOI
 

2016 | Conference Paper | IST-REx-ID: 1070 | OA
Computation tree logic for synchronization properties
K. Chatterjee, L. Doyen, in:, Schloss Dagstuhl- Leibniz-Zentrum fur Informatik, 2016.
[Published Version] View | Files available | DOI
 

2016 | Conference Paper | IST-REx-ID: 10746 | OA
Study of vortex states and dynamics in mesoscopic superconducting samples with MFM
H. Polshyn, T. Naibert, V. Chua, R. Budakian, in:, APS March Meeting 2016, American Physical Society, 2016.
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2016 | Conference Paper | IST-REx-ID: 10747 | OA
Stochastic resonance magnetic force microscopy imaging of Josephson arrays
T. Naibert, H. Polshyn, B. Wolin, M. Durkin, R. Garrido Menacho, I.M. Shem, V. Chua, T. Hughes, N. Mason, R. Budakian, in:, APS March Meeting 2016, American Physical Society, 2016.
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2016 | Journal Article | IST-REx-ID: 1081 | OA
Cellular mechanisms for cargo delivery and polarity maintenance at different polar domains in plant cells
Ł. Łangowski, K.T. Wabnik, H. Li, S. Vanneste, S. Naramoto, H. Tanaka, J. Friml, Cell Discovery 2 (2016).
[Published Version] View | Files available | DOI
 

2016 | Conference Paper | IST-REx-ID: 10810 | OA
SCP-ECG V3.0: An enhanced standard communication protocol for computer-assisted electrocardiography
P. Rubel, D. Pani, A. Schlögl, J. Fayn, F. Badilini, P. Macfarlane, A. Varri, in:, 2016 Computing in Cardiology Conference, Computing in Cardiology, 2016, pp. 309–312.
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2016 | Conference Paper | IST-REx-ID: 1082 | OA
Relevant sparse codes with variational information bottleneck
M.J. Chalk, O. Marre, G. Tkačik, in:, Neural Information Processing Systems, 2016, pp. 1965–1973.
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2016 | Journal Article | IST-REx-ID: 1083
KCTD12 auxiliary proteins modulate kinetics of GABAB receptor-mediated inhibition in Cholecystokinin-containing interneurons
S. Booker, D. Althof, A. Gross, D. Loreth, J. Müller, A. Unger, B. Fakler, A. Varro, M. Watanabe, M. Gassmann, B. Bettler, R. Shigemoto, I. Vida, Á. Kulik, Cerebral Cortex 27 (2016) 2318–2334.
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2016 | Journal Article | IST-REx-ID: 1088
Geometric control and modeling of genome reprogramming
C. Uhler, G.V. Shivashankar, BioArchitecture 6 (2016) 76–84.
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2016 | Conference Paper | IST-REx-ID: 1090 | OA
Nested weighted limit-average automata of bounded width
K. Chatterjee, T.A. Henzinger, J. Otop, in:, Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2016.
[Published Version] View | Files available | DOI
 

2016 | Conference Paper | IST-REx-ID: 1095 | OA
Local linearizability for concurrent container-type data structures
A. Haas, T.A. Henzinger, A. Holzer, C. Kirsch, M. Lippautz, H. Payer, A. Sezgin, A. Sokolova, H. Veith, in:, Leibniz International Proceedings in Informatics, Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2016.
[Published Version] View | Files available | DOI
 

2016 | Conference Paper | IST-REx-ID: 1097 | OA
Computational multicopter design
T. Du, A. Schulz, B. Zhu, B. Bickel, W. Matusik, in:, ACM, 2016.
[Submitted Version] View | Files available | DOI
 

2016 | Conference Paper | IST-REx-ID: 1098 | OA
Lifelong learning with weighted majority votes
A. Pentina, R. Urner, in:, Neural Information Processing Systems, 2016, pp. 3619–3627.
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2016 | Conference Paper | IST-REx-ID: 1099 | OA
FlexMolds: Automatic design of flexible shells for molding
L. Malomo, N. Pietroni, B. Bickel, P. Cignoni, in:, ACM, 2016.
[Submitted Version] View | Files available | DOI
 

2016 | Conference Paper | IST-REx-ID: 1102 | OA
Improving weakly-supervised object localization by micro-annotation
A. Kolesnikov, C. Lampert, in:, Proceedings of the British Machine Vision Conference 2016, BMVA Press, 2016, p. 92.1-92.12.
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2016 | Conference Paper | IST-REx-ID: 1103 | OA
Parallel reachability analysis for hybrid systems
A. Gurung, A. Deka, E. Bartocci, S. Bogomolov, R. Grosu, R. Ray, in:, IEEE, 2016.
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2016 | Conference Paper | IST-REx-ID: 1105
Estimating nonlinear neural response functions using GP priors and Kronecker methods
C. Savin, G. Tkačik, in:, Neural Information Processing Systems, 2016, pp. 3610–3618.
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2016 | Journal Article | IST-REx-ID: 11072 | OA
p120-catenin prevents multinucleation through control of MKLP1-dependent RhoA activity during cytokinesis
R.A.H. van de Ven, J.S. de Groot, D. Park, R. van Domselaar, D. de Jong, K. Szuhai, E. van der Wall, O.M. Rueda, H.R. Ali, C. Caldas, P.J. van Diest, M. Hetzer, E. Sahai, P.W.B. Derksen, Nature Communications 7 (2016).
[Published Version] View | Files available | DOI | Download Published Version (ext.) | PubMed | Europe PMC
 

2016 | Journal Article | IST-REx-ID: 11071 | OA
Evolution of a transcriptional regulator from a transmembrane nucleoporin
T.M. Franks, C. Benner, I. Narvaiza, M.C.N. Marchetto, J.M. Young, H.S. Malik, F.H. Gage, M. Hetzer, Genes & Development 30 (2016) 1155–1171.
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2016 | Journal Article | IST-REx-ID: 11069 | OA
Nuclear envelope rupture is induced by actin-based nucleus confinement
E.M. Hatch, M. Hetzer, Journal of Cell Biology 215 (2016) 27–36.
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2016 | Journal Article | IST-REx-ID: 11070 | OA
Nucleoporin-mediated regulation of cell identity genes
A. Ibarra, C. Benner, S. Tyagi, J. Cool, M. Hetzer, Genes & Development 30 (2016) 2253–2258.
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2016 | Conference Paper | IST-REx-ID: 1115 | OA
Efficient single sideband microwave to optical conversion using a LiNbO₃ WGM-resonator
A. Rueda, F. Sedlmeir, M. Collodo, U. Vogl, B. Stiller, G. Schunk, D. Strekalov, C. Marquardt, J.M. Fink, O. Painter, G. Leuchs, H. Schwefel, in:, IEEE, 2016.
[Preprint] View | Files available | DOI | Download Preprint (ext.)
 

2016 | Conference Paper | IST-REx-ID: 1135 | OA
Synthesizing time triggered schedules for switched networks with faulty links
G. Avni, S. Guha, G. Rodríguez Navas, in:, Proceedings of the 13th International Conference on Embedded Software , ACM, 2016.
[Submitted Version] View | Files available | DOI
 

2016 | Conference Paper | IST-REx-ID: 1134
Tutorial: Software tools for hybrid systems verification transformation and synthesis C2E2 HyST and TuLiP
P. Duggirala, C. Fan, M. Potok, B. Qi, S. Mitra, M. Viswanathan, S. Bak, S. Bogomolov, T. Johnson, L. Nguyen, C. Schilling, A. Sogokon, H. Tran, W. Xiang, in:, 2016 IEEE Conference on Control Applications, IEEE, 2016.
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2016 | Conference Paper | IST-REx-ID: 1136 | OA
Space-time sculpting of liquid animation
P. Manteaux, U. Vimont, C. Wojtan, D. Rohmer, M. Cani, in:, Proceedings of the 9th International Conference on Motion in Games , ACM, 2016.
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2016 | Journal Article | IST-REx-ID: 1137 | OA
RASGRP1 deficiency causes immunodeficiency with impaired cytoskeletal dynamics
Salzer E, Çaǧdaş D, Hons M, Mace E, Garncarz W, Petronczki O, Platzer R, Pfajfer L, Bilic I, Ban S, Willmann K, Mukherjee M, Supper V, Hsu H, Banerjee P, Sinha P, Mcclanahan F, Zlabinger G, Pickl W, Gribben J, Stockinger H, Bennett K, Huppa J, Dupré L, Sanal Ö, Jäger U, Sixt MK, Tezcan I, Orange J, Boztug K. 2016. RASGRP1 deficiency causes immunodeficiency with impaired cytoskeletal dynamics. Nature Immunology. 17(12), 1352–1360.
[Submitted Version] View | DOI | Download Submitted Version (ext.) | PubMed | Europe PMC
 

2016 | Conference Paper | IST-REx-ID: 1138 | OA
Quantitative automata under probabilistic semantics
K. Chatterjee, T.A. Henzinger, J. Otop, in:, Proceedings of the 31st Annual ACM/IEEE Symposium, IEEE, 2016, pp. 76–85.
[Preprint] View | DOI | Download Preprint (ext.) | arXiv
 

2016 | Conference Paper | IST-REx-ID: 1140 | OA
Model and objective separation with conditional lower bounds: disjunction is harder than conjunction
K. Chatterjee, W. Dvoák, M.H. Henzinger, V. Loitzenbauer, in:, Proceedings of the 31st Annual ACM/IEEE Symposium on Logic in Computer Science, IEEE, 2016, pp. 197–206.
[Preprint] View | DOI | Download Preprint (ext.) | arXiv
 

2016 | Journal Article | IST-REx-ID: 1139
Microtubule aging probed by microfluidics assisted tubulin washout
C.F. Düllberg, N. Cade, T. Surrey, Molecular Biology and Evolution 27 (2016) 3563–3573.
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2016 | Journal Article | IST-REx-ID: 1142 | OA
Heme drives hemolysis-induced susceptibility to infection via disruption of phagocyte functions
Martins R, Maier J, Gorki A, Huber K, Sharif O, Starkl P, Saluzzo S, Quattrone F, Gawish R, Lakovits K, Aichinger M, Radic Sarikas B, Lardeau C, Hladik A, Korosec A, Brown M, Vaahtomeri K, Duggan M, Kerjaschki D, Esterbauer H, Colinge J, Eisenbarth S, Decker T, Bennett K, Kubicek S, Sixt MK, Superti Furga G, Knapp S. 2016. Heme drives hemolysis-induced susceptibility to infection via disruption of phagocyte functions. Nature Immunology. 17(12), 1361–1372.
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2016 | Journal Article | IST-REx-ID: 1141
Hierarchic genetic strategy with maturing as a generic tool for multiobjective optimization
R. Łazarz, M. Idzik, K. Gądek, E.P. Gajda-Zagorska, Journal of Computational Science 17 (2016) 249–260.
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2016 | Journal Article | IST-REx-ID: 1143 | OA
Ground states of large bosonic systems: The gross Pitaevskii limit revisited
P. Nam, N. Rougerie, R. Seiringer, Analysis and PDE 9 (2016) 459–485.
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2016 | Journal Article | IST-REx-ID: 1145 | OA
Enquiry into the topology of plasma membrane localized PIN auxin transport components
T. Nodzyński, S. Vanneste, M. Zwiewka, M. Pernisová, J. Hejátko, J. Friml, Molecular Plant 9 (2016) 1504–1519.
[Published Version] View | Files available | DOI
 

2016 | Journal Article | IST-REx-ID: 1147 | OA
Auxin flow mediated competition between axillary buds to restore apical dominance
J. Balla, Z. Medved’Ová, P. Kalousek, N. Matiješčuková, J. Friml, V. Reinöhl, S. Procházka, Scientific Reports 6 (2016).
[Published Version] View | Files available | DOI
 

2016 | Journal Article | IST-REx-ID: 1149
A study of rigorous ODE integrators for multi scale set oriented computations
T. Miyaji, P. Pilarczyk, M. Gameiro, H. Kokubu, K. Mischaikow, Applied Numerical Mathematics 107 (2016) 34–47.
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2016 | Journal Article | IST-REx-ID: 1150
A Radical Break Restraining Neutrophil Migration
J. Renkawitz, M.K. Sixt, Developmental Cell 38 (2016) 448–450.
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2016 | Journal Article | IST-REx-ID: 1151 | OA
A noncanonical auxin sensing mechanism is required for organ morphogenesis in arabidopsis
S. Simonini, J. Deb, L. Moubayidin, P. Stephenson, M. Valluru, A. Freire Rios, K. Sorefan, D. Weijers, J. Friml, L. Östergaard, Genes and Development 30 (2016) 2286–2296.
[Published Version] View | Files available | DOI | PubMed | Europe PMC
 

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