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365 Publications


2015 | Journal Article | IST-REx-ID: 1556 | OA
Jia, Y., Tian, H., Li, H., Yu, Q., Wang, L., Friml, J., & Ding, Z. (2015). The Arabidopsis thaliana elongator complex subunit 2 epigenetically affects root development. Journal of Experimental Botany, 66(15), 4631–4642. https://doi.org/10.1093/jxb/erv230
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2015 | Journal Article | IST-REx-ID: 1557
Javdani, F., Holló, K., Hegedűs, K., Kis, G., Hegyi, Z., Dócs, K., … Antal, M. (2015). Differential expression patterns of K+Cl- cotransporter 2 in neurons within the superficial spinal dorsal horn of rats. Journal of Comparative Neurology, 523(13), 1967–1983. https://doi.org/10.1002/cne.23774
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2015 | Journal Article | IST-REx-ID: 1558
Ivanchenko, M., Zhu, J., Wang, B., Medvecka, E., Du, Y., Azzarello, E., … Geisler, M. (2015). The cyclophilin a DIAGEOTROPICA gene affects auxin transport in both root and shoot to control lateral root formation. Development, 142(4), 712–721. https://doi.org/10.1242/dev.113225
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2015 | Journal Article | IST-REx-ID: 1559 | OA
Ibsen-Jensen, R., Chatterjee, K., & Nowak, M. (2015). Computational complexity of ecological and evolutionary spatial dynamics. PNAS, 112(51), 15636–15641. https://doi.org/10.1073/pnas.1511366112
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2015 | Journal Article | IST-REx-ID: 1560
Hons, M., & Sixt, M. K. (2015). The lymph node filter revealed. Nature Immunology, 16(4), 338–340. https://doi.org/10.1038/ni.3126
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2015 | Journal Article | IST-REx-ID: 1561
Heger, K., Kober, M., Rieß, D., Drees, C., De Vries, I., Bertossi, A., … Schmidt Supprian, M. (2015). A novel Cre recombinase reporter mouse strain facilitates selective and efficient infection of primary immune cells with adenoviral vectors. European Journal of Immunology, 45(6), 1614–1620. https://doi.org/10.1002/eji.201545457
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2015 | Journal Article | IST-REx-ID: 1562
Grones, P., Chen, X., Simon, S., Kaufmann, W., De Rycke, R., Nodzyński, T., … Friml, J. (2015). Auxin-binding pocket of ABP1 is crucial for its gain-of-function cellular and developmental roles. Journal of Experimental Botany, 66(16), 5055–5065. https://doi.org/10.1093/jxb/erv177
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2015 | Journal Article | IST-REx-ID: 1563
Graff, G., & Pilarczyk, P. (2015). An algorithmic approach to estimating the minimal number of periodic points for smooth self-maps of simply-connected manifolds. Topological Methods in Nonlinear Analysis, 45(1), 273–286. https://doi.org/10.12775/TMNA.2015.014
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2015 | Journal Article | IST-REx-ID: 1564 | OA
Gilson, M., Savin, C., & Zenke, F. (2015). Editorial: Emergent neural computation from the interaction of different forms of plasticity. Frontiers in Computational Neuroscience, 9(11). https://doi.org/10.3389/fncom.2015.00145
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2015 | Journal Article | IST-REx-ID: 1565 | OA
Gavello, D., Vandael, D. H., Gosso, S., Carbone, E., & Carabelli, V. (2015). Dual action of leptin on rest-firing and stimulated catecholamine release via phosphoinositide 3-kinase-riven BK channel up-regulation in mouse chromaffin cells. Journal of Physiology, 593(22), 4835–4853. https://doi.org/10.1113/JP271078
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2015 | Journal Article | IST-REx-ID: 1566 | OA
Gómez Sicilia, À., Sikora, M. K., Cieplak, M., & Carrión Vázquez, M. (2015). An exploration of the universe of polyglutamine structures. PLoS Computational Biology, 11(10). https://doi.org/10.1371/journal.pcbi.1004541
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2015 | Conference Paper | IST-REx-ID: 1567
Edelsbrunner, H. (2015). Shape, homology, persistence, and stability. Presented at the GD: Graph Drawing and Network Visualization, Los Angeles, CA, United States: Springer.
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2015 | Conference Paper | IST-REx-ID: 1568
Dunaeva, O., Edelsbrunner, H., Lukyanov, A., Machin, M., & Malkova, D. (2015). The classification of endoscopy images with persistent homology. In Proceedings - 16th International Symposium on Symbolic and Numeric Algorithms for Scientific Computing (p. 7034731). Timisoara, Romania: IEEE. https://doi.org/10.1109/SYNASC.2014.81
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2015 | Journal Article | IST-REx-ID: 1569 | OA
Doyle, S., Haegera, A., Vain, T., Rigala, A., Viotti, C., Łangowskaa, M., … Robert, S. (2015). An early secretory pathway mediated by gnom-like 1 and gnom is essential for basal polarity establishment in Arabidopsis thaliana. PNAS, 112(7), E806–E815. https://doi.org/10.1073/pnas.1424856112
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2015 | Journal Article | IST-REx-ID: 1570 | OA
Der, R., & Martius, G. S. (2015). Novel plasticity rule can explain the development of sensorimotor intelligence. PNAS, 112(45), E6224–E6232. https://doi.org/10.1073/pnas.1508400112
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2015 | Journal Article | IST-REx-ID: 1571
De Vos, M., Dawid, A., Šunderlíková, V., & Tans, S. (2015). Breaking evolutionary constraint with a tradeoff ratchet. PNAS, 112(48), 14906–14911. https://doi.org/10.1073/pnas.1510282112
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2015 | Journal Article | IST-REx-ID: 1572 | OA
Correggi, M., Giuliani, A., & Seiringer, R. (2015). Validity of the spin-wave approximation for the free energy of the Heisenberg ferromagnet. Communications in Mathematical Physics, 339(1), 279–307. https://doi.org/10.1007/s00220-015-2402-0
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2015 | Journal Article | IST-REx-ID: 1573 | OA
Chen, T., Hainzl, C., Pavlović, N., & Seiringer, R. (2015). Unconditional uniqueness for the cubic gross pitaevskii hierarchy via quantum de finetti. Communications on Pure and Applied Mathematics, 68(10), 1845–1884. https://doi.org/10.1002/cpa.21552
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2015 | Journal Article | IST-REx-ID: 1574 | OA
Chen, Q., Liu, Y., Maere, S., Lee, E., Van Isterdael, G., Xie, Z., … Vanneste, S. (2015). A coherent transcriptional feed-forward motif model for mediating auxin-sensitive PIN3 expression during lateral root development. Nature Communications, 6. https://doi.org/10.1038/ncomms9821
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2015 | Journal Article | IST-REx-ID: 1575 | OA
Chabaud, M., Heuzé, M., Bretou, M., Vargas, P., Maiuri, P., Solanes, P., … Lennon Duménil, A. (2015). Cell migration and antigen capture are antagonistic processes coupled by myosin II in dendritic cells. Nature Communications, 6. https://doi.org/10.1038/ncomms8526
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2015 | Journal Article | IST-REx-ID: 1576 | OA
Cepeda Humerez, S. A., Rieckh, G., & Tkacik, G. (2015). Stochastic proofreading mechanism alleviates crosstalk in transcriptional regulation. Physical Review Letters, 115(24). https://doi.org/10.1103/PhysRevLett.115.248101
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2015 | Journal Article | IST-REx-ID: 1577 | OA
Carvalho, A., Vicoso, B., Russo, C., Swenor, B., & Clark, A. (2015). Birth of a new gene on the Y chromosome of Drosophila melanogaster. PNAS, 112(40), 12450–12455. https://doi.org/10.1073/pnas.1516543112
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2015 | Journal Article | IST-REx-ID: 1578
Cao, T., Edelsbrunner, H., & Tan, T. (2015). Triangulations from topologically correct digital Voronoi diagrams. Computational Geometry, 48(7), 507–519. https://doi.org/10.1016/j.comgeo.2015.04.001
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2015 | Journal Article | IST-REx-ID: 1580 | OA
Brenes, O., Vandael, D. H., Carbone, E., Montarolo, P., & Ghirardi, M. (2015). Knock-down of synapsin alters cell excitability and action potential waveform by potentiating BK and voltage gated Ca2 currents in Helix serotonergic neurons. Neuroscience, 311, 430–443. https://doi.org/10.1016/j.neuroscience.2015.10.046
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2015 | Journal Article | IST-REx-ID: 1581
Bollenbach, M. T., & Heisenberg, C.-P. J. (2015). Gradients are shaping up. Cell, 161(3), 431–432. https://doi.org/10.1016/j.cell.2015.04.009
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2015 | Journal Article | IST-REx-ID: 1582 | OA
Biedl, T., Held, M., Huber, S., Kaaser, D., & Palfrader, P. (2015). Weighted straight skeletons in the plane. Computational Geometry: Theory and Applications, 48(2), 120–133. https://doi.org/10.1016/j.comgeo.2014.08.006
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2015 | Journal Article | IST-REx-ID: 1583 | OA
Biedl, T., Held, M., Huber, S., Kaaser, D., & Palfrader, P. (2015). A simple algorithm for computing positively weighted straight skeletons of monotone polygons. Information Processing Letters, 115(2), 243–247. https://doi.org/10.1016/j.ipl.2014.09.021
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2015 | Journal Article | IST-REx-ID: 1584 | OA
Biedl, T., Held, M., Huber, S., Kaaser, D., & Palfrader, P. (2015). Reprint of: Weighted straight skeletons in the plane. Computational Geometry: Theory and Applications, 48(5), 429–442. https://doi.org/10.1016/j.comgeo.2015.01.004
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2015 | Journal Article | IST-REx-ID: 1585
Bao, Z., Pan, G., & Zhou, W. (2015). Asymptotic mutual information statistics of MIMO channels and CLT of sample covariance matrices. IEEE Transactions on Information Theory, 61(6), 3413–3426. https://doi.org/10.1109/TIT.2015.2421894
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2015 | Journal Article | IST-REx-ID: 1586
Angermayr, A., Gorchs, A., & Hellingwerf, K. (2015). Metabolic engineering of cyanobacteria for the synthesis of commodity products. Trends in Biotechnology, 33(6), 352–361. https://doi.org/10.1016/j.tibtech.2015.03.009
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2015 | Journal Article | IST-REx-ID: 1587 | OA
Amaro, P., Fratini, F., Safari, L., Antognini, A., Indelicato, P., Pohl, R., & Santos, J. (2015). Quantum interference shifts in laser spectroscopy with elliptical polarization. Physical Review A - Atomic, Molecular, and Optical Physics, 92(6), 062506. https://doi.org/10.1103/PhysRevA.92.062506
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2015 | Journal Article | IST-REx-ID: 1588
Altmeyer, S., Do, Y., & Lai, Y. (2015). Ring-bursting behavior en route to turbulence in narrow-gap Taylor-Couette flows. Physical Review E, 92(5). https://doi.org/10.1103/PhysRevE.92.053018
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2015 | Journal Article | IST-REx-ID: 1589 | OA
Altmeyer, S., Do, Y., & Lai, Y. (2015). Magnetic field induced flow pattern reversal in a ferrofluidic Taylor-Couette system. Scientific Reports, 5. https://doi.org/10.1038/srep18589
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2015 | Book Chapter | IST-REx-ID: 1590 | OA
Aichholzer, O., Biedl, T., Hackl, T., Held, M., Huber, S., Palfrader, P., & Vogtenhuber, B. (2015). Representing directed trees as straight skeletons. In Graph Drawing and Network Visualization (Vol. 9411, pp. 335–347). Los Angeles, CA, United States: Springer. https://doi.org/10.1007/978-3-319-27261-0_28
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2015 | Journal Article | IST-REx-ID: 1591 | OA
Adamowski, M., & Friml, J. (2015). PIN-dependent auxin transport: Action, regulation, and evolution. Plant Cell, 27(1), 20–32. https://doi.org/10.1105/tpc.114.134874
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2015 | Journal Article | IST-REx-ID: 1593 | OA
Žádníková, P., Smet, D., Zhu, Q., Van Der Straeten, D., & Benková, E. (2015). Strategies of seedlings to overcome their sessile nature: Auxin in mobility control. Frontiers in Plant Science, 6(4). https://doi.org/10.3389/fpls.2015.00218
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2015 | Conference Paper | IST-REx-ID: 1594
Forejt, V., Krčál, J., & Kretinsky, J. (2015). Controller synthesis for MDPs and frequency LTL\GU (Vol. 9450, pp. 162–177). Presented at the LPAR: Logic for Programming, Artificial Intelligence, and Reasoning, Suva, Fiji: Springer. https://doi.org/10.1007/978-3-662-48899-7_12
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2015 | Conference Paper | IST-REx-ID: 1595 | OA
Fulek, R., Pelsmajer, M., & Schaefer, M. (2015). Hanani-Tutte for radial planarity (Vol. 9411, pp. 99–110). Presented at the GD: Graph Drawing and Network Visualization, Los Angeles, CA, USA: Springer. https://doi.org/10.1007/978-3-319-27261-0_9
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2015 | Conference Paper | IST-REx-ID: 1596 | OA
Fulek, R., & Radoičić, R. (2015). Vertical visibility among parallel polygons in three dimensions. Presented at the GD: Graph Drawing and Network Visualization, Los Angeles, CA, United States: Springer. https://doi.org/10.1007/978-3-319-27261-0_31
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2015 | Journal Article | IST-REx-ID: 1598 | OA
Chatterjee, K., Joglekar, M., & Shah, N. (2015). Average case analysis of the classical algorithm for Markov decision processes with Büchi objectives. Theoretical Computer Science, 573(3), 71–89. https://doi.org/10.1016/j.tcs.2015.01.050
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2015 | Conference Paper | IST-REx-ID: 1601 | OA
Babiak, T., Blahoudek, F., Duret Lutz, A., Klein, J., Kretinsky, J., Mueller, D., … Strejček, J. (2015). The Hanoi omega-automata format (Vol. 9206, pp. 479–486). Presented at the CAV: Computer Aided Verification, San Francisco, CA, United States: Springer. https://doi.org/10.1007/978-3-319-21690-4_31
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2015 | Journal Article | IST-REx-ID: 1602 | OA
Chatterjee, K., Ibsen-Jensen, R., Pavlogiannis, A., & Goyal, P. (2015). Faster algorithms for algebraic path properties in recursive state machines with constant treewidth. ACM SIGPLAN Notices, 50(1), 97–109. https://doi.org/10.1145/2676726.2676979
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2015 | Conference Paper | IST-REx-ID: 1603 | OA
Brázdil, T., Chatterjee, K., Chmelik, M., Fellner, A., & Kretinsky, J. (2015). Counterexample explanation by learning small strategies in Markov decision processes (Vol. 9206, pp. 158–177). Presented at the CAV: Computer Aided Verification, San Francisco, CA, United States: Springer. https://doi.org/10.1007/978-3-319-21690-4_10
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2015 | Journal Article | IST-REx-ID: 1604
Chatterjee, K., Pavlogiannis, A., & Velner, Y. (2015). Quantitative interprocedural analysis. Proceedings of the 42nd Annual ACM SIGPLAN-SIGACT , 50(1), 539–551. https://doi.org/10.1145/2676726.2676968
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2015 | Conference Paper | IST-REx-ID: 1605 | OA
Bogomolov, S., Schilling, C., Bartocci, E., Batt, G., Kong, H., & Grosu, R. (2015). Abstraction-based parameter synthesis for multiaffine systems (Vol. 9434, pp. 19–35). Presented at the HVC: Haifa Verification Conference, Haifa, Israel: Springer. https://doi.org/10.1007/978-3-319-26287-1_2
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2015 | Conference Paper | IST-REx-ID: 1606
Nguyen, L., Schilling, C., Bogomolov, S., & Johnson, T. (2015). Runtime verification for hybrid analysis tools. Presented at the RV: Runtime Verification, Vienna, Austria: Springer. https://doi.org/10.1007/978-3-319-23820-3_19
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2015 | Conference Paper | IST-REx-ID: 1607 | OA
Chatterjee, K., Ibsen-Jensen, R., & Pavlogiannis, A. (2015). Faster algorithms for quantitative verification in constant treewidth graphs (Vol. 9206, pp. 140–157). Presented at the CAV: Computer Aided Verification, San Francisco, CA, USA: Springer. https://doi.org/10.1007/978-3-319-21690-4_9
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2015 | Conference Paper | IST-REx-ID: 1609 | OA
Chatterjee, K., Doyen, L., & Vardi, M. (2015). The complexity of synthesis from probabilistic components. Presented at the ICALP: Automata, Languages and Programming, Kyoto, Japan: Springer. https://doi.org/10.1007/978-3-662-47666-6_9
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2015 | Conference Paper | IST-REx-ID: 1610
Chatterjee, K., Henzinger, T. A., Ibsen-Jensen, R., & Otop, J. (2015). Edit distance for pushdown automata. Presented at the ICALP: Automata, Languages and Programming, Kyoto, Japan: Springer. https://doi.org/10.1007/978-3-662-47666-6_10
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2015 | Journal Article | IST-REx-ID: 1611 | OA
Whitfield, J., Zhang, W., Herde, M., Clifton, B., Radziejewski, J., Janovjak, H. L., … Jackson, C. (2015). Construction of a robust and sensitive arginine biosensor through ancestral protein reconstruction. Protein Science, 24(9), 1412–1422. https://doi.org/10.1002/pro.2721
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