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371 Publications


2015 | Conference Paper | IST-REx-ID: 1839 | OA
Brázdil, Tomáš, Krishnendu Chatterjee, Vojtěch Forejt, and Antonín Kučera. “Multigain: A Controller Synthesis Tool for MDPs with Multiple Mean-Payoff Objectives.” Lecture Notes in Computer Science. Springer, 2015. https://doi.org/10.1007/978-3-662-46681-0_12.
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2015 | Journal Article | IST-REx-ID: 1840 | OA
Geiger, Bernhard, Tatjana Petrov, Gernot Kubin, and Heinz Koeppl. “Optimal Kullback-Leibler Aggregation via Information Bottleneck.” IEEE Transactions on Automatic Control 60, no. 4 (2015): 1010–22. https://doi.org/10.1109/TAC.2014.2364971.
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2015 | Journal Article | IST-REx-ID: 1841 | OA
Kolmogorov, Vladimir. “A New Look at Reweighted Message Passing.” IEEE Transactions on Pattern Analysis and Machine Intelligence 37, no. 5 (2015): 919–30. https://doi.org/10.1109/TPAMI.2014.2363465.
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2015 | Journal Article | IST-REx-ID: 1843
Bod’ová, Katarína, David Paydarfar, and Daniel Forger. “Erratum to: Characterizing Spiking in Noisy Type II Neurons [J. Theor. Biol. 365 (2015) 40–54].” Journal of Theoretical Biology 373 (2015). https://doi.org/10.1016/j.jtbi.2015.03.013.
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2015 | Journal Article | IST-REx-ID: 1845 | OA
Vandael, David H, Claudia M Espinoza Martinez, and Peter M Jonas. “Excitement about Inhibitory Presynaptic Terminals.” Neuron 85, no. 6 (2015): 1149–51. https://doi.org/10.1016/j.neuron.2015.03.006.
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2015 | Journal Article | IST-REx-ID: 1846 | OA
Beneš, Nikola, Jan Kretinsky, Kim Larsen, Mikael Möller, Salomon Sickert, and Jiří Srba. “Refinement Checking on Parametric Modal Transition Systems.” Acta Informatica 52, no. 2–3 (2015): 269–97. https://doi.org/10.1007/s00236-015-0215-4.
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2015 | Journal Article | IST-REx-ID: 1847
Grones, Peter, and Jiřĺ Friml. “ABP1: Finally Docking.” Molecular Plant 8, no. 3 (2015): 356–58. https://doi.org/10.1016/j.molp.2014.12.013.
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2015 | Journal Article | IST-REx-ID: 1848 | OA
Schwamb, Bettina, Robert Pick, Sara Fernández, Kirsten Völp, Jan Heering, Volker Dötsch, Susanne Bösser, et al. “FAM96A Is a Novel Pro-Apoptotic Tumor Suppressor in Gastrointestinal Stromal Tumors.” International Journal of Cancer 137, no. 6 (2015): 1318–29. https://doi.org/10.1002/ijc.29498.
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2015 | Journal Article | IST-REx-ID: 1849
Himschoot, Ellie, Tom Beeckman, Jiřĺ Friml, and Steffen Vanneste. “Calcium Is an Organizer of Cell Polarity in Plants.” Biochimica et Biophysica Acta - Molecular Cell Research 1853, no. 9 (2015): 2168–72. https://doi.org/10.1016/j.bbamcr.2015.02.017.
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2015 | Journal Article | IST-REx-ID: 1850 | OA
Novak, Sebastian, and Sylvia Cremer. “Fungal Disease Dynamics in Insect Societies: Optimal Killing Rates and the Ambivalent Effect of High Social Interaction Rates.” Journal of Theoretical Biology 372, no. 5 (2015): 54–64. https://doi.org/10.1016/j.jtbi.2015.02.018.
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2015 | Journal Article | IST-REx-ID: 1851 | OA
Priklopil, Tadeas, Eva Kisdi, and Mats Gyllenberg. “Evolutionarily Stable Mating Decisions for Sequentially Searching Females and the Stability of Reproductive Isolation by Assortative Mating.” Evolution 69, no. 4 (2015): 1015–26. https://doi.org/10.1111/evo.12618.
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2015 | Journal Article | IST-REx-ID: 1855 | OA
Mcmahon, Dino, Matthias Fürst, Jesicca Caspar, Panagiotis Theodorou, Mark Brown, and Robert Paxton. “A Sting in the Spit: Widespread Cross-Infection of Multiple RNA Viruses across Wild and Managed Bees.” Journal of Animal Ecology 84, no. 3 (2015): 615–24. https://doi.org/10.1111/1365-2656.12345.
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2015 | Journal Article | IST-REx-ID: 1856 | OA
Chatterjee, Krishnendu, Thomas A Henzinger, Barbara Jobstmann, and Rohit Singh. “Measuring and Synthesizing Systems in Probabilistic Environments.” Journal of the ACM 62, no. 1 (2015). https://doi.org/10.1145/2699430.
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2015 | Conference Paper | IST-REx-ID: 1857 | OA
Pentina, Anastasia, Viktoriia Sharmanska, and Christoph Lampert. “Curriculum Learning of Multiple Tasks,” 5492–5500. IEEE, 2015. https://doi.org/10.1109/CVPR.2015.7299188.
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2015 | Conference Paper | IST-REx-ID: 1858 | OA
Lampert, Christoph. “Predicting the Future Behavior of a Time-Varying Probability Distribution,” 942–50. IEEE, 2015. https://doi.org/10.1109/CVPR.2015.7298696.
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2015 | Conference Paper | IST-REx-ID: 1859 | OA
Shah, Neel, Vladimir Kolmogorov, and Christoph Lampert. “A Multi-Plane Block-Coordinate Frank-Wolfe Algorithm for Training Structural SVMs with a Costly Max-Oracle,” 2737–45. IEEE, 2015. https://doi.org/10.1109/CVPR.2015.7298890.
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2015 | Conference Paper | IST-REx-ID: 1860 | OA
Royer, Amélie, and Christoph Lampert. “Classifier Adaptation at Prediction Time,” 1401–9. IEEE, 2015. https://doi.org/10.1109/CVPR.2015.7298746.
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2015 | Journal Article | IST-REx-ID: 1861
Ruess, Jakob, and John Lygeros. “Moment-Based Methods for Parameter Inference and Experiment Design for Stochastic Biochemical Reaction Networks.” ACM Transactions on Modeling and Computer Simulation 25, no. 2 (2015). https://doi.org/10.1145/2688906.
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2015 | Journal Article | IST-REx-ID: 1864 | OA
Erdös, László, and Antti Knowles. “The Altshuler–Shklovskii Formulas for Random Band Matrices II: The General Case.” Annales Henri Poincare 16, no. 3 (2015): 709–99. https://doi.org/10.1007/s00023-014-0333-5.
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2015 | Journal Article | IST-REx-ID: 1865
Robert, Hélène, Wim Grunewald, Michael Sauer, Bernard Cannoot, Mercedes Soriano, Ranjan Swarup, Dolf Weijers, Malcolm Bennett, Kim Boutilier, and Jirí Friml. “Plant Embryogenesis Requires AUX/LAX-Mediated Auxin Influx.” Development 142, no. 4 (2015): 702–11. https://doi.org/10.1242/dev.115832.
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2015 | Journal Article | IST-REx-ID: 1866
Henzinger, Thomas A, and Jean Raskin. “The Equivalence Problem for Finite Automata: Technical Perspective.” Communications of the ACM 58, no. 2 (2015): 86–86. https://doi.org/10.1145/2701001.
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2015 | Journal Article | IST-REx-ID: 1867
Hühner, Jens, Álvaro Inglés Prieto, Christian Neusüß, Michael Lämmerhofer, and Harald L Janovjak. “Quantification of Riboflavin, Flavin Mononucleotide, and Flavin Adenine Dinucleotide in Mammalian Model Cells by CE with LED-Induced Fluorescence Detection.” Electrophoresis 36, no. 4 (2015): 518–25. https://doi.org/10.1002/elps.201400451.
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2015 | Journal Article | IST-REx-ID: 1868
Park, Youngyong, Younghae Do, Sebastian Altmeyer, Yingcheng Lai, and Gyuwon Lee. “Early Effect in Time-Dependent, High-Dimensional Nonlinear Dynamical Systems with Multiple Resonances.” Physical Review E 91, no. 2 (2015). https://doi.org/10.1103/PhysRevE.91.022906.
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2015 | Journal Article | IST-REx-ID: 1871 | OA
Grones, Peter, and Jiří Friml. “Auxin Transporters and Binding Proteins at a Glance.” Journal of Cell Science 128, no. 1 (2015): 1–7. https://doi.org/10.1242/jcs.159418.
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2015 | Journal Article | IST-REx-ID: 1873 | OA
Chatterjee, Krishnendu, and Martin Chmelik. “POMDPs under Probabilistic Semantics.” Artificial Intelligence 221 (2015): 46–72. https://doi.org/10.1016/j.artint.2014.12.009.
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2015 | Journal Article | IST-REx-ID: 1874
Boccara, Charlotte, Lisa Kjønigsen, Ingvild Hammer, Jan Bjaalie, Trygve Leergaard, and Menno Witter. “A Three-Plane Architectonic Atlas of the Rat Hippocampal Region.” Hippocampus 25, no. 7 (2015): 838–57. https://doi.org/10.1002/hipo.22407.
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2015 | Journal Article | IST-REx-ID: 1878
Cires Rodriguez, Eduardo, and José Prieto. “Phylogenetic Relationships of Petrocoptis A. Braun Ex Endl. (Caryophyllaceae), a Discussed Genus from the Iberian Peninsula.” Journal of Plant Research 128, no. 2 (2015): 223–38. https://doi.org/10.1007/s10265-014-0691-6.
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2015 | Journal Article | IST-REx-ID: 1879 | OA
Kremer, A, Stefaan Lippens, Sonia Bartunkova, Bob Asselbergh, Cendric Blanpain, Matyas Fendrych, A Goossens, et al. “Developing 3D SEM in a Broad Biological Context.” Journal of Microscopy 259, no. 2 (2015): 80–96. https://doi.org/10.1111/jmi.12211.
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2015 | Journal Article | IST-REx-ID: 1880 | OA
Könenberg, Martin, Thomas Moser, Robert Seiringer, and Jakob Yngvason. “Superfluid Behavior of a Bose-Einstein Condensate in a Random Potential.” New Journal of Physics 17 (2015). https://doi.org/10.1088/1367-2630/17/1/013022.
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2015 | Conference Paper | IST-REx-ID: 1882 | OA
Fahrenberg, Uli, Jan Kretinsky, Axel Legay, and Louis Traonouez. “Compositionality for Quantitative Specifications,” 8997:306–24. Springer, 2015. https://doi.org/10.1007/978-3-319-15317-9_19.
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2015 | Journal Article | IST-REx-ID: 1883 | OA
Keller-Schmidt, Stephanie, Murat Tugrul, Víctor Eguíluz, Emilio Hernandez Garcia, and Konstantin Klemm. “Anomalous Scaling in an Age-Dependent Branching Model.” Physical Review E Statistical Nonlinear and Soft Matter Physics 91, no. 2 (2015): 022803. https://doi.org/10.1103/PhysRevE.91.022803.
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2015 | Journal Article | IST-REx-ID: 1885 | OA
Tkacik, Gasper, Julien Dubuis, Mariela Petkova, and Thomas Gregor. “Positional Information, Positional Error, and Readout Precision in Morphogenesis: A Mathematical Framework.” Genetics 199, no. 1 (2015): 39–59. https://doi.org/10.1534/genetics.114.171850.
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2015 | Journal Article | IST-REx-ID: 1938
Pausinger, Florian, and Stefan Steinerberger. “On the Distribution of Local Extrema in Quantum Chaos.” Physics Letters, Section A 379, no. 6 (2015): 535–41. https://doi.org/10.1016/j.physleta.2014.12.010.
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2015 | Journal Article | IST-REx-ID: 1939
Dereziński, Jan, and Marcin M Napiórkowski. “Erratum to: Excitation Spectrum of Interacting Bosons in the Mean-Field Infinite-Volume Limit.” Annales Henri Poincare 16, no. 7 (2015): 1709–11. https://doi.org/10.1007/s00023-014-0390-9.
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2015 | Journal Article | IST-REx-ID: 1940 | OA
Sokolowski, Thomas R, and Gasper Tkacik. “Optimizing Information Flow in Small Genetic Networks. IV. Spatial Coupling.” Physical Review E Statistical Nonlinear and Soft Matter Physics 91, no. 6 (2015). https://doi.org/10.1103/PhysRevE.91.062710.
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2015 | Journal Article | IST-REx-ID: 1944
Rakusová, Hana, Matyas Fendrych, and Jirí Friml. “Intracellular Trafficking and PIN-Mediated Cell Polarity during Tropic Responses in Plants.” Current Opinion in Plant Biology 23, no. 2 (2015): 116–23. https://doi.org/10.1016/j.pbi.2014.12.002.
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2015 | Journal Article | IST-REx-ID: 802
Engel, Jakob, Philipp S Schmalhorst, Anke Kruger, Christina Muller, Falk Buettner, and Françoise Routier. “Characterization of an N-Acetylglucosaminyltransferase Involved in Aspergillus Fumigatus Zwitterionic Glycoinositolphosphoceramide Biosynthesis.” Glycobiology 25, no. 12 (2015): 1423–30. https://doi.org/10.1093/glycob/cwv059.
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2015 | Journal Article | IST-REx-ID: 814
Schur, Florian, Wim Hagen, Michaela Rumlová, Tomáš Ruml, B Müller, Hans Kraüsslich, and John Briggs. “Structure of the Immature HIV-1 Capsid in Intact Virus Particles at 8.8 Å Resolution.” Nature 517, no. 7535 (2015): 505–8. https://doi.org/10.1038/nature13838.
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2015 | Journal Article | IST-REx-ID: 815
Schur, Florian, Robert Dick, Wim Hagen, Volker Vogt, and John Briggs. “The Structure of Immature Virus like Rous Sarcoma Virus Gag Particles Reveals a Structural Role for the P10 Domain in Assembly.” Journal of Virology 89, no. 20 (2015): 10294–302. https://doi.org/10.1128/JVI.01502-15.
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2015 | Preprint | IST-REx-ID: 8183 | OA
Avvakumov, Sergey, Isaac Mabillard, A. Skopenkov, and Uli Wagner. “Eliminating Higher-Multiplicity Intersections, III. Codimension 2.” arXiv, n.d.
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2015 | Journal Article | IST-REx-ID: 8242
Einhorn, Lukas, Judit Singer, Martina Muhr, Alexandra Schoos, Kumiko Oida, Josef Singer, Lucia Panakova, Krisztina Manzano-Szalai, and Erika Jensen-Jarolim. “Generation of Recombinant FcεRIα of Dog, Cat and Horse for Component-Resolved Allergy Diagnosis in Veterinary Patients.” Journal of Allergy and Clinical Immunology 135, no. 2 (2015). https://doi.org/10.1016/j.jaci.2014.12.1263.
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2015 | Journal Article | IST-REx-ID: 832
Marhavy, Peter, and Eva Benková. “Real Time Analysis of Lateral Root Organogenesis in Arabidopsis.” Bio-Protocol 5, no. 8 (2015). https://doi.org/10.21769/BioProtoc.1446.
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2015 | Journal Article | IST-REx-ID: 848
Usmanova, Dinara, Luca Ferretti, Inna Povolotskaya, Peter Vlasov, and Fyodor Kondrashov. “A Model of Substitution Trajectories in Sequence Space and Long-Term Protein Evolution.” Molecular Biology and Evolution 32, no. 2 (2015): 542–54. https://doi.org/10.1093/molbev/msu318.
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2015 | Journal Article | IST-REx-ID: 866
Kretz, Colin, Manhong Dai, Onuralp Soylemez, Andrew Yee, Karl Desch, David Siemieniak, Kärt Tomberg, Fyodor Kondrashov, Fan Meng, and David Ginsburg. “Massively Parallel Enzyme Kinetics Reveals the Substrate Recognition Landscape of the Metalloprotease ADAMTS13.” PNAS 112, no. 30 (2015): 9328–33. https://doi.org/10.1073/pnas.1511328112.
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2015 | Journal Article | IST-REx-ID: 886
Kondrashov, Dmitry, and Fyodor Kondrashov. “Topological Features of Rugged Fitness Landscapes in Sequence Space.” Trends in Genetics 31, no. 1 (2015): 24–33. https://doi.org/10.1016/j.tig.2014.09.009.
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2015 | Journal Article | IST-REx-ID: 906
Arkhipova, Oksana, Margarita Meer, Galina Mikoulinskaia, Marina Zakharova, Alexander Galushko, Vasilii Akimenko, and Fyodor Kondrashov. “Recent Origin of the Methacrylate Redox System in Geobacter Sulfurreducens AM-1 through Horizontal Gene Transfer.” PLoS One 10, no. 5 (2015). https://doi.org/10.1371/journal.pone.0125888.
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2015 | Journal Article | IST-REx-ID: 928 | OA
Sehring, Ivonne, Pierre Recho, Elsa Denker, Matthew Kourakis, Birthe Mathiesen, Edouard B Hannezo, Bo Dong, and Di Jiang. “Assembly and Positioning of Actomyosin Rings by Contractility and Planar Cell Polarity.” ELife 4 (2015). https://doi.org/10.7554/eLife.09206.
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2015 | Journal Article | IST-REx-ID: 933 | OA
García, Simón, Edouard B Hannezo, Jens Elgeti, Jean Joanny, Pascal Silberzan, and Nir Gov. “Physics of Active Jamming during Collective Cellular Motion in a Monolayer.” PNAS 112, no. 50 (2015): 15314–19. https://doi.org/10.1073/pnas.1510973112.
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2015 | Journal Article | IST-REx-ID: 981 | OA
Zeljkovic, Ilija, Yoshinori Okada, Maksym Serbyn, Raman Sankar, Daniel Walkup, Wenwen Zhou, Junwei Liu, et al. “Dirac Mass Generation from Crystal Symmetry Breaking on the Surfaces of Topological Crystalline Insulators.” Nature Materials 14, no. 3 (2015): 318–24. https://doi.org/10.1038/nmat4215.
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2015 | Journal Article | IST-REx-ID: 982 | OA
Serbyn, Maksym, Zlatko Papić, and Dmitry Abanin. “Criterion for Many-Body Localization-Delocalization Phase Transition.” Physical Review X 5, no. 4 (2015). https://doi.org/10.1103/PhysRevX.5.041047.
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