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371 Publications


2015 | Conference Paper | IST-REx-ID: 1839 | OA
Multigain: A controller synthesis tool for MDPs with multiple mean-payoff objectives
T. Brázdil, K. Chatterjee, V. Forejt, A. Kučera, 9035 (2015) 181–187.
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2015 | Journal Article | IST-REx-ID: 1840 | OA
Optimal Kullback-Leibler aggregation via information bottleneck
B. Geiger, T. Petrov, G. Kubin, H. Koeppl, IEEE Transactions on Automatic Control 60 (2015) 1010–1022.
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2015 | Journal Article | IST-REx-ID: 1841 | OA
A new look at reweighted message passing
V. Kolmogorov, IEEE Transactions on Pattern Analysis and Machine Intelligence 37 (2015) 919–930.
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2015 | Journal Article | IST-REx-ID: 1843
Erratum to: Characterizing spiking in noisy type II neurons [J. Theor. Biol. 365 (2015) 40–54]
K. Bod’ová, D. Paydarfar, D. Forger, Journal of Theoretical Biology 373 (2015).
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2015 | Journal Article | IST-REx-ID: 1845 | OA
Excitement about inhibitory presynaptic terminals
D.H. Vandael, C.M. Espinoza Martinez, P.M. Jonas, Neuron 85 (2015) 1149–1151.
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2015 | Journal Article | IST-REx-ID: 1846 | OA
Refinement checking on parametric modal transition systems
N. Beneš, J. Kretinsky, K. Larsen, M. Möller, S. Sickert, J. Srba, Acta Informatica 52 (2015) 269–297.
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2015 | Journal Article | IST-REx-ID: 1847
ABP1: Finally docking
P. Grones, J. Friml, Molecular Plant 8 (2015) 356–358.
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2015 | Journal Article | IST-REx-ID: 1848 | OA
FAM96A is a novel pro-apoptotic tumor suppressor in gastrointestinal stromal tumors
B. Schwamb, R. Pick, S. Fernández, K. Völp, J. Heering, V. Dötsch, S. Bösser, J. Jung, R. Beinoravičiute Kellner, J. Wesely, I. Zörnig, M. Hammerschmidt, M. Nowak, R. Penzel, K. Zatloukal, S. Joos, R. Rieker, A. Agaimy, S. Söder, K. Reid Lombardo, M. Kendrick, M. Bardsley, Y. Hayashi, D. Asuzu, S. Syed, T. Ördög, M. Zörnig, International Journal of Cancer 137 (2015) 1318–1329.
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2015 | Journal Article | IST-REx-ID: 1849
Calcium is an organizer of cell polarity in plants
E. Himschoot, T. Beeckman, J. Friml, S. Vanneste, Biochimica et Biophysica Acta - Molecular Cell Research 1853 (2015) 2168–2172.
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2015 | Journal Article | IST-REx-ID: 1850 | OA
Fungal disease dynamics in insect societies: Optimal killing rates and the ambivalent effect of high social interaction rates
S. Novak, S. Cremer, Journal of Theoretical Biology 372 (2015) 54–64.
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2015 | Journal Article | IST-REx-ID: 1851 | OA
Evolutionarily stable mating decisions for sequentially searching females and the stability of reproductive isolation by assortative mating
T. Priklopil, E. Kisdi, M. Gyllenberg, Evolution 69 (2015) 1015–1026.
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2015 | Journal Article | IST-REx-ID: 1855 | OA
A sting in the spit: Widespread cross-infection of multiple RNA viruses across wild and managed bees
D. Mcmahon, M. Fürst, J. Caspar, P. Theodorou, M. Brown, R. Paxton, Journal of Animal Ecology 84 (2015) 615–624.
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2015 | Journal Article | IST-REx-ID: 1856 | OA
Measuring and synthesizing systems in probabilistic environments
K. Chatterjee, T.A. Henzinger, B. Jobstmann, R. Singh, Journal of the ACM 62 (2015).
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2015 | Conference Paper | IST-REx-ID: 1857 | OA
Curriculum learning of multiple tasks
A. Pentina, V. Sharmanska, C. Lampert, in:, IEEE, 2015, pp. 5492–5500.
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2015 | Conference Paper | IST-REx-ID: 1858 | OA
Predicting the future behavior of a time-varying probability distribution
C. Lampert, in:, IEEE, 2015, pp. 942–950.
View | DOI | Download Preprint (ext.) | arXiv
 

2015 | Conference Paper | IST-REx-ID: 1859 | OA
A multi-plane block-coordinate Frank-Wolfe algorithm for training structural SVMs with a costly max-oracle
N. Shah, V. Kolmogorov, C. Lampert, in:, IEEE, 2015, pp. 2737–2745.
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2015 | Conference Paper | IST-REx-ID: 1860 | OA
Classifier adaptation at prediction time
A. Royer, C. Lampert, in:, IEEE, 2015, pp. 1401–1409.
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2015 | Journal Article | IST-REx-ID: 1861
Moment-based methods for parameter inference and experiment design for stochastic biochemical reaction networks
J. Ruess, J. Lygeros, ACM Transactions on Modeling and Computer Simulation 25 (2015).
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2015 | Journal Article | IST-REx-ID: 1864 | OA
The Altshuler–Shklovskii formulas for random band matrices II: The general case
L. Erdös, A. Knowles, Annales Henri Poincare 16 (2015) 709–799.
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2015 | Journal Article | IST-REx-ID: 1865
Plant embryogenesis requires AUX/LAX-mediated auxin influx
H. Robert, W. Grunewald, M. Sauer, B. Cannoot, M. Soriano, R. Swarup, D. Weijers, M. Bennett, K. Boutilier, J. Friml, Development 142 (2015) 702–711.
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2015 | Journal Article | IST-REx-ID: 1866
The equivalence problem for finite automata: Technical perspective
T.A. Henzinger, J. Raskin, Communications of the ACM 58 (2015) 86–86.
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2015 | Journal Article | IST-REx-ID: 1867
Quantification of riboflavin, flavin mononucleotide, and flavin adenine dinucleotide in mammalian model cells by CE with LED-induced fluorescence detection
J. Hühner, Á. Inglés Prieto, C. Neusüß, M. Lämmerhofer, H.L. Janovjak, Electrophoresis 36 (2015) 518–525.
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2015 | Journal Article | IST-REx-ID: 1868
Early effect in time-dependent, high-dimensional nonlinear dynamical systems with multiple resonances
Y. Park, Y. Do, S. Altmeyer, Y. Lai, G. Lee, Physical Review E 91 (2015).
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2015 | Journal Article | IST-REx-ID: 1871 | OA
Auxin transporters and binding proteins at a glance
P. Grones, J. Friml, Journal of Cell Science 128 (2015) 1–7.
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2015 | Journal Article | IST-REx-ID: 1873 | OA
POMDPs under probabilistic semantics
K. Chatterjee, M. Chmelik, Artificial Intelligence 221 (2015) 46–72.
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2015 | Journal Article | IST-REx-ID: 1874
A three-plane architectonic atlas of the rat hippocampal region
C. Boccara, L. Kjønigsen, I. Hammer, J. Bjaalie, T. Leergaard, M. Witter, Hippocampus 25 (2015) 838–857.
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2015 | Journal Article | IST-REx-ID: 1878
Phylogenetic relationships of Petrocoptis A. Braun ex Endl. (Caryophyllaceae), a discussed genus from the Iberian Peninsula
E. Cires Rodriguez, J. Prieto, Journal of Plant Research 128 (2015) 223–238.
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2015 | Journal Article | IST-REx-ID: 1879 | OA
Developing 3D SEM in a broad biological context
A. Kremer, S. Lippens, S. Bartunkova, B. Asselbergh, C. Blanpain, M. Fendrych, A. Goossens, M. Holt, S. Janssens, M. Krols, J. Larsimont, C. Mc Guire, M. Nowack, X. Saelens, A. Schertel, B. Schepens, M. Slezak, V. Timmerman, C. Theunis, R. Van Brempt, Y. Visser, C. Guérin, Journal of Microscopy 259 (2015) 80–96.
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2015 | Journal Article | IST-REx-ID: 1880 | OA
Superfluid behavior of a Bose-Einstein condensate in a random potential
M. Könenberg, T. Moser, R. Seiringer, J. Yngvason, New Journal of Physics 17 (2015).
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2015 | Conference Paper | IST-REx-ID: 1882 | OA
Compositionality for quantitative specifications
U. Fahrenberg, J. Kretinsky, A. Legay, L. Traonouez, in:, Springer, 2015, pp. 306–324.
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2015 | Journal Article | IST-REx-ID: 1883 | OA
Anomalous scaling in an age-dependent branching model
S. Keller-Schmidt, M. Tugrul, V. Eguíluz, E. Hernandez Garcia, K. Klemm, Physical Review E Statistical Nonlinear and Soft Matter Physics 91 (2015) 022803.
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2015 | Journal Article | IST-REx-ID: 1885 | OA
Positional information, positional error, and readout precision in morphogenesis: A mathematical framework
G. Tkacik, J. Dubuis, M. Petkova, T. Gregor, Genetics 199 (2015) 39–59.
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2015 | Journal Article | IST-REx-ID: 1938
On the distribution of local extrema in quantum chaos
F. Pausinger, S. Steinerberger, Physics Letters, Section A 379 (2015) 535–541.
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2015 | Journal Article | IST-REx-ID: 1939
Erratum to: Excitation spectrum of interacting bosons in the Mean-Field Infinite-Volume limit
J. Dereziński, M.M. Napiórkowski, Annales Henri Poincare 16 (2015) 1709–1711.
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2015 | Journal Article | IST-REx-ID: 1940 | OA
Optimizing information flow in small genetic networks. IV. Spatial coupling
T.R. Sokolowski, G. Tkacik, Physical Review E Statistical Nonlinear and Soft Matter Physics 91 (2015).
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2015 | Journal Article | IST-REx-ID: 1944
Intracellular trafficking and PIN-mediated cell polarity during tropic responses in plants
H. Rakusová, M. Fendrych, J. Friml, Current Opinion in Plant Biology 23 (2015) 116–123.
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2015 | Journal Article | IST-REx-ID: 802
Characterization of an N-acetylglucosaminyltransferase involved in Aspergillus fumigatus zwitterionic glycoinositolphosphoceramide biosynthesis
J. Engel, P.S. Schmalhorst, A. Kruger, C. Muller, F. Buettner, F. Routier, Glycobiology 25 (2015) 1423–1430.
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2015 | Journal Article | IST-REx-ID: 814
Structure of the immature HIV-1 capsid in intact virus particles at 8.8 Å resolution
F. Schur, W. Hagen, M. Rumlová, T. Ruml, B. Müller, H. Kraüsslich, J. Briggs, Nature 517 (2015) 505–508.
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2015 | Journal Article | IST-REx-ID: 815
The structure of immature virus like Rous sarcoma virus gag particles reveals a structural role for the p10 domain in assembly
F. Schur, R. Dick, W. Hagen, V. Vogt, J. Briggs, Journal of Virology 89 (2015) 10294–10302.
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2015 | Preprint | IST-REx-ID: 8183 | OA
Eliminating higher-multiplicity intersections, III. Codimension 2
S. Avvakumov, I. Mabillard, A. Skopenkov, U. Wagner, (n.d.).
View | Files available | Download Preprint (ext.) | arXiv
 

2015 | Journal Article | IST-REx-ID: 8242
Generation of recombinant FcεRIα of dog, cat and horse for component-resolved allergy diagnosis in veterinary patients
L. Einhorn, J. Singer, M. Muhr, A. Schoos, K. Oida, J. Singer, L. Panakova, K. Manzano-Szalai, E. Jensen-Jarolim, Journal of Allergy and Clinical Immunology 135 (2015).
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2015 | Journal Article | IST-REx-ID: 832
Real time analysis of lateral root organogenesis in arabidopsis
P. Marhavy, E. Benková, Bio-Protocol 5 (2015).
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2015 | Journal Article | IST-REx-ID: 848
A model of substitution trajectories in sequence space and long-term protein evolution
D. Usmanova, L. Ferretti, I. Povolotskaya, P. Vlasov, F. Kondrashov, Molecular Biology and Evolution 32 (2015) 542–554.
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2015 | Journal Article | IST-REx-ID: 866
Massively parallel enzyme kinetics reveals the substrate recognition landscape of the metalloprotease ADAMTS13
C. Kretz, M. Dai, O. Soylemez, A. Yee, K. Desch, D. Siemieniak, K. Tomberg, F. Kondrashov, F. Meng, D. Ginsburg, PNAS 112 (2015) 9328–9333.
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2015 | Journal Article | IST-REx-ID: 886
Topological features of rugged fitness landscapes in sequence space
D. Kondrashov, F. Kondrashov, Trends in Genetics 31 (2015) 24–33.
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2015 | Journal Article | IST-REx-ID: 906
Recent origin of the methacrylate redox system in Geobacter sulfurreducens AM-1 through horizontal gene transfer
O. Arkhipova, M. Meer, G. Mikoulinskaia, M. Zakharova, A. Galushko, V. Akimenko, F. Kondrashov, PLoS One 10 (2015).
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2015 | Journal Article | IST-REx-ID: 928 | OA
Assembly and positioning of actomyosin rings by contractility and planar cell polarity
I. Sehring, P. Recho, E. Denker, M. Kourakis, B. Mathiesen, E.B. Hannezo, B. Dong, D. Jiang, ELife 4 (2015).
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2015 | Journal Article | IST-REx-ID: 933 | OA
Physics of active jamming during collective cellular motion in a monolayer
S. García, E.B. Hannezo, J. Elgeti, J. Joanny, P. Silberzan, N. Gov, PNAS 112 (2015) 15314–15319.
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2015 | Journal Article | IST-REx-ID: 981 | OA
Dirac mass generation from crystal symmetry breaking on the surfaces of topological crystalline insulators
I. Zeljkovic, Y. Okada, M. Serbyn, R. Sankar, D. Walkup, W. Zhou, J. Liu, G. Chang, Y. Wang, M. Hasan, F. Chou, H. Lin, A. Bansil, L. Fu, V. Madhavan, Nature Materials 14 (2015) 318–324.
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2015 | Journal Article | IST-REx-ID: 982 | OA
Criterion for many-body localization-delocalization phase transition
M. Serbyn, Z. Papić, D. Abanin, Physical Review X 5 (2015).
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