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357 Publications


2015 | Journal Article | IST-REx-ID: 1676
Editorial overview: Cell adhesion and migration
M.K. Sixt, E. Raz, Current Opinion in Cell Biology 36 (2015) 4–6.
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2015 | Journal Article | IST-REx-ID: 1683
Gaining mass: The structure of respiratory complex I-from bacterial towards mitochondrial versions
J.A. Letts, L.A. Sazanov, Current Opinion in Structural Biology 33 (2015) 135–145.
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2015 | Journal Article | IST-REx-ID: 1688   OA
Bounds for Pach's selection theorem and for the minimum solid angle in a simplex
R. Karasev, J. Kynčl, P. Paták, Z. Patakova, M. Tancer, Discrete & Computational Geometry 54 (2015) 610–636.
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2015 | Journal Article | IST-REx-ID: 1710   OA
Minimal resistance of curves under the single impact assumption
A. Akopyan, A. Plakhov, Society for Industrial and Applied Mathematics 47 (2015) 2754–2769.
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2015 | Conference Paper | IST-REx-ID: 1859   OA
A multi-plane block-coordinate Frank-Wolfe algorithm for training structural SVMs with a costly max-oracle
N. Shah, V. Kolmogorov, C. Lampert, in:, IEEE, 2015, pp. 2737–2745.
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2015 | Journal Article | IST-REx-ID: 1861
Moment-based methods for parameter inference and experiment design for stochastic biochemical reaction networks
J. Ruess, J. Lygeros, ACM Transactions on Modeling and Computer Simulation 25 (2015).
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2015 | Journal Article | IST-REx-ID: 1866
The equivalence problem for finite automata: Technical perspective
T.A. Henzinger, J. Raskin, Communications of the ACM 58 (2015) 86–86.
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2015 | Journal Article | IST-REx-ID: 1873   OA
POMDPs under probabilistic semantics
K. Chatterjee, M. Chmelik, Artificial Intelligence 221 (2015) 46–72.
View | DOI | Download (ext.) | arXiv
 

2015 | Journal Article | IST-REx-ID: 1878 View | DOI
 

2015 | Journal Article | IST-REx-ID: 1880   OA
Superfluid behavior of a Bose-Einstein condensate in a random potential
M. Könenberg, T. Moser, R. Seiringer, J. Yngvason, New Journal of Physics 17 (2015).
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2015 | Journal Article | IST-REx-ID: 1885   OA
Positional information, positional error, and readout precision in morphogenesis: A mathematical framework
G. Tkacik, J. Dubuis, M. Petkova, T. Gregor, Genetics 199 (2015) 39–59.
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2015 | Journal Article | IST-REx-ID: 1823   OA
Systematic discovery of drug interaction mechanisms
G. Chevereau, M.T. Bollenbach, Molecular Systems Biology 11 (2015).
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2015 | Journal Article | IST-REx-ID: 1828   OA
Invariant measures of genetic recombination process
A. Akopyan, S. Pirogov, A. Rybko, Journal of Statistical Physics 160 (2015) 163–167.
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2015 | Journal Article | IST-REx-ID: 1830   OA
Opposing effects of allogrooming on disease transmission in ant societies
F. Theis, L.V. Ugelvig, C. Marr, S. Cremer, Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences 370 (2015).
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2015 | Journal Article | IST-REx-ID: 1809   OA
Indirect genetic effects and the dynamics of social interactions
B. Trubenova, S. Novak, R. Hager, PLoS One 10 (2015).
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2015 | Journal Article | IST-REx-ID: 1811   OA
Analytical evaluation of atomic form factors: Application to Rayleigh scattering
L. Safari, J. Santos, P. Amaro, K. Jänkälä, F. Fratini, Journal of Mathematical Physics 56 (2015).
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2015 | Journal Article | IST-REx-ID: 1804   OA
Transition to turbulence in Taylor-Couette ferrofluidic flow
S. Altmeyer, Y. Do, Y. Lai, Scientific Reports 5 (2015).
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2015 | Journal Article | IST-REx-ID: 1847
ABP1: Finally docking
P. Grones, J. Friml, Molecular Plant 8 (2015) 356–358.
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2015 | Journal Article | IST-REx-ID: 1993   OA
Anti-pathogen protection versus survival costs mediated by an ectosymbiont in an ant host
M. Konrad, A.V. Grasse, S. Tragust, S. Cremer, Proceedings of the Royal Society of London Series B Biological Sciences 282 (2015).
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2015 | Journal Article | IST-REx-ID: 2030   OA
A hybrid MPI-OpenMP parallel implementation for pseudospectral simulations with application to Taylor-Couette flow
L. Shi, M. Rampp, B. Hof, M. Avila, Computers and Fluids 106 (2015) 1–11.
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2015 | Journal Article | IST-REx-ID: 2035   OA
The persistent homology of a self-map
H. Edelsbrunner, G. Jablonski, M. Mrozek, Foundations of Computational Mathematics 15 (2015) 1213–1244.
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2015 | Journal Article | IST-REx-ID: 2085   OA
Collective excitations of Bose gases in the mean-field regime
P. Nam, R. Seiringer, Archive for Rational Mechanics and Analysis 215 (2015) 381–417.
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2015 | Journal Article | IST-REx-ID: 259
Rational points on cubic hypersurfaces over F_q(t)
T.D. Browning, P. Vishe, Geometric and Functional Analysis 25 (2015) 671–732.
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2015 | Journal Article | IST-REx-ID: 362
Size and aspect ratio control of Pd inf 2 inf Sn nanorods and their water denitration properties
Z. Lu, M. Ibanez, A. Antolín, A. Genç, A. Shavel, S. Contreras, F. Medina, J. Arbiol, A. Cabot, Langmuir 31 (2015) 3952–3957.
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2015 | Conference Paper | IST-REx-ID: 1481
Automatic generation of alternative starting positions for simple traditional board games
U. Ahmed, K. Chatterjee, S. Gulwani, in:, AAAI Press, 2015, pp. 745–752.
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2015 | Conference Paper | IST-REx-ID: 778   OA
Inherent limitations of hybrid transactional memory
D. Alistarh, J. Kopinsky, P. Kuznetsov, S. Ravi, N. Shavit, in:, Springer, 2015, pp. 185–199.
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2015 | Conference Paper | IST-REx-ID: 780   OA
Polylogarithmic-time leader election in population protocols
D.-A. Alistarh, R. Gelashvili, in:, Springer, 2015, pp. 479–491.
View | DOI | Download (ext.) | arXiv
 

2015 | Journal Article | IST-REx-ID: 886
Topological features of rugged fitness landscapes in sequence space
D. Kondrashov, F. Kondrashov, Trends in Genetics 31 (2015) 24–33.
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2015 | Journal Article | IST-REx-ID: 906
Recent origin of the methacrylate redox system in Geobacter sulfurreducens AM-1 through horizontal gene transfer
O. Arkhipova, M. Meer, G. Mikoulinskaia, M. Zakharova, A. Galushko, V. Akimenko, F. Kondrashov, PLoS One 10 (2015).
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2015 | Journal Article | IST-REx-ID: 848
A model of substitution trajectories in sequence space and long-term protein evolution
D. Usmanova, L. Ferretti, I. Povolotskaya, P. Vlasov, F. Kondrashov, Molecular Biology and Evolution 32 (2015) 542–554.
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2015 | Journal Article | IST-REx-ID: 982   OA
Criterion for many-body localization-delocalization phase transition
M. Serbyn, Z. Papić, D. Abanin, Physical Review X 5 (2015).
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2015 | Journal Article | IST-REx-ID: 1501
CEGAR for compositional analysis of qualitative properties in Markov decision processes
K. Chatterjee, M. Chmelik, P. Daca, Formal Methods in System Design 47 (2015) 230–264.
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2015 | Journal Article | IST-REx-ID: 1602
Faster algorithms for algebraic path properties in recursive state machines with constant treewidth
K. Chatterjee, R. Ibsen-Jensen, A. Pavlogiannis, P. Goyal, ACM SIGPLAN Notices 50 (2015) 97–109.
View | Files available | DOI | Download (ext.) | arXiv
 

2015 | Conference Paper | IST-REx-ID: 1607
Faster algorithms for quantitative verification in constant treewidth graphs
K. Chatterjee, R. Ibsen-Jensen, A. Pavlogiannis, in:, Springer, 2015, pp. 140–157.
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2015 | Journal Article | IST-REx-ID: 1537
Cortical contractility triggers a stochastic switch to fast amoeboid cell motility
V. Ruprecht, S. Wieser, A. Callan Jones, M. Smutny, H. Morita, K. Sako, V. Barone, M. Ritsch Marte, M.K. Sixt, R. Voituriez, C.-P.J. Heisenberg, Cell 160 (2015) 673–685.
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2015 | Conference Paper | IST-REx-ID: 1633 View | Files available | DOI
 

2015 | Journal Article | IST-REx-ID: 1619
Quantifying the determinants of evolutionary dynamics leading to drug resistance
G. Chevereau, M. Dravecka, T. Batur, A. Guvenek, D. Ayhan, E. Toprak, M.T. Bollenbach, PLoS Biology 13 (2015) e1002299.
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2015 | Technical Report | IST-REx-ID: 5440
The complexity of evolutionary games on graphs
K. Chatterjee, R. Ibsen-Jensen, M. Nowak, The Complexity of Evolutionary Games on Graphs, IST Austria, 2015.
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2015 | Technical Report | IST-REx-ID: 5438
Edit distance for pushdown automata
K. Chatterjee, T.A. Henzinger, R. Ibsen-Jensen, J. Otop, Edit Distance for Pushdown Automata, IST Austria, 2015.
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2015 | Conference Paper | IST-REx-ID: 1835
Model checking gene regulatory networks
M. Giacobbe, C.C. Guet, A. Gupta, T.A. Henzinger, T. Paixao, T. Petrov, 9035 (2015) 469–483.
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2015 | Conference Paper | IST-REx-ID: 1657
Unifying two views on multiple mean-payoff objectives in Markov decision processes
K. Chatterjee, Z. Komárková, J. Kretinsky, (2015) 244–256.
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2015 | Thesis | IST-REx-ID: 1400
The subclonal evolution of cancer
J. Reiter, The Subclonal Evolution of Cancer, IST Austria, 2015.
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2015 | Conference Paper | IST-REx-ID: 1425   OA
Lifelong learning with non-i.i.d. tasks
A. Pentina, C. Lampert, in:, Neural Information Processing Systems, 2015, pp. 1540–1548.
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2015 | Thesis | IST-REx-ID: 1401
Learning with attributes for object recognition: Parametric and non-parametrics views
V. Sharmanska, Learning with Attributes for Object Recognition: Parametric and Non-Parametrics Views, IST Austria, 2015.
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2015 | Journal Article | IST-REx-ID: 1540
The importance of localized auxin production for morphogenesis of reproductive organs and embryos in Arabidopsis
H. Robert, L. Crhák Khaitová, S. Mroue, E. Benková, Journal of Experimental Botany 66 (2015) 5029–5042.
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2015 | Journal Article | IST-REx-ID: 1557
Differential expression patterns of K+Cl- cotransporter 2 in neurons within the superficial spinal dorsal horn of rats
F. Javdani, K. Holló, K. Hegedűs, G. Kis, Z. Hegyi, K. Dócs, Y. Kasugai, Y. Fukazawa, R. Shigemoto, M. Antal, Journal of Comparative Neurology 523 (2015) 1967–1983.
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2015 | Journal Article | IST-REx-ID: 1564   OA
Editorial: Emergent neural computation from the interaction of different forms of plasticity
M. Gilson, C. Savin, F. Zenke, Frontiers in Computational Neuroscience 9 (2015).
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2015 | Journal Article | IST-REx-ID: 1514
Endocannabinoids induce lateral long term potentiation of transmitter release by stimulation of gliotransmission
M. Gómez Gonzalo, M. Navarrete, G. Perea, A. Covelo, M. Martín Fernández, R. Shigemoto, R. Luján, A. Araque, Cerebral Cortex 25 (2015) 3699–3712.
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2015 | Journal Article | IST-REx-ID: 1519   OA
The interpretation of selection coefficients
N.H. Barton, M. Servedio, Evolution 69 (2015) 1101–1112.
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2015 | Conference Paper | IST-REx-ID: 1499   OA
Polynomial time decidability of weighted synchronization under partial observability
J. Kretinsky, K. Larsen, S. Laursen, J. Srba, in:, Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2015, pp. 142–154.
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