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358 Publications


2015 | Journal Article | IST-REx-ID: 1555
Rich bifurcation structure in a two patch vaccination model
D. Knipl, P. Pilarczyk, G. Röst, SIAM Journal on Applied Dynamical Systems 14 (2015) 980–1017.
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2015 | Journal Article | IST-REx-ID: 1562
Auxin-binding pocket of ABP1 is crucial for its gain-of-function cellular and developmental roles
P. Grones, X. Chen, S. Simon, W. Kaufmann, R. De Rycke, T. Nodzyński, E. Zažímalová, J. Friml, Journal of Experimental Botany 66 (2015) 5055–5065.
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2015 | Conference Paper | IST-REx-ID: 1567
Shape, homology, persistence, and stability
H. Edelsbrunner, 9411 (2015).
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2015 | Journal Article | IST-REx-ID: 1517   OA
From large deviations to Wasserstein gradient flows in multiple dimensions
M. Erbar, J. Maas, M. Renger, Electronic Communications in Probability 20 (2015) 89.
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2015 | Journal Article | IST-REx-ID: 1531
Visualizing symmetric indefinite 2D tensor fields using The Heat Kernel Signature
V. Zobel, J. Reininghaus, I. Hotz, Mathematics and Visualization 40 (2015) 257–267.
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2015 | Journal Article | IST-REx-ID: 1536
Asymmetric localizations of the ABC transporter PaPDR1 trace paths of directional strigolactone transport
J. Sasse, S. Simon, C. Gübeli, G. Liu, X. Cheng, J. Friml, H. Bouwmeester, E. Martinoia, L. Borghi, Current Biology 25 (2015) 647–655.
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2015 | Journal Article | IST-REx-ID: 1574   OA
A coherent transcriptional feed-forward motif model for mediating auxin-sensitive PIN3 expression during lateral root development
Q. Chen, Y. Liu, S. Maere, E. Lee, G. Van Isterdael, Z. Xie, W. Xuan, J. Lucas, V. Vassileva, S. Kitakura, P. Marhavy, K.T. Wabnik, N. Geldner, E. Benková, J. Le, H. Fukaki, E. Grotewold, C. Li, J. Friml, F. Sack, T. Beeckman, S. Vanneste, Nature Communications 6 (2015).
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2015 | Journal Article | IST-REx-ID: 1593   OA
Strategies of seedlings to overcome their sessile nature: Auxin in mobility control
P. Žádníková, D. Smet, Q. Zhu, D. Van Der Straeten, E. Benková, Frontiers in Plant Science 6 (2015).
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2015 | Journal Article | IST-REx-ID: 1579   OA
Galois groups of Schubert problems of lines are at least alternating
C. Brooks, A. Martin Del Campo Sanchez, F. Sottile, Transactions of the American Mathematical Society 367 (2015) 4183–4206.
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2015 | Journal Article | IST-REx-ID: 1581
Gradients are shaping up
M.T. Bollenbach, C.-P.J. Heisenberg, Cell 161 (2015) 431–432.
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2015 | Journal Article | IST-REx-ID: 1586
Metabolic engineering of cyanobacteria for the synthesis of commodity products
A. Angermayr, A. Gorchs, K. Hellingwerf, Trends in Biotechnology 33 (2015) 352–361.
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2015 | Conference Paper | IST-REx-ID: 1649   OA
Efficient zero-knowledge proofs for commitments from learning with errors over rings
F. Benhamouda, S. Krenn, V. Lyubashevsky, K.Z. Pietrzak, 9326 (2015) 305–325.
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2015 | Conference Paper | IST-REx-ID: 1651
Anonymous transferable e-cash
F. Baldimtsi, M. Chase, G. Fuchsbauer, M. Kohlweiss, in:, Springer, 2015, pp. 101–124.
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2015 | Conference Paper | IST-REx-ID: 1644   OA
Query-complexity amplification for random oracles
G. Demay, P. Gazi, U. Maurer, B. Tackmann, in:, Springer, 2015, pp. 159–180.
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2015 | Journal Article | IST-REx-ID: 1618   OA
Solution structure of CCL19 and identification of overlapping CCR7 and PSGL-1 binding sites
C. Veldkamp, E. Kiermaier, S. Gabel Eissens, M. Gillitzer, D. Lippner, F. Disilvio, C. Mueller, P. Wantuch, G. Chaffee, M. Famiglietti, D. Zgoba, A. Bailey, Y. Bah, S. Engebretson, D. Graupner, E. Lackner, V. Larosa, T. Medeiros, M. Olson, A. Phillips, H. Pyles, A. Richard, S. Schoeller, B. Touzeau, L. Williams, M.K. Sixt, F. Peterson, Biochemistry 54 (2015) 4163–4166.
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2015 | Conference Paper | IST-REx-ID: 1601
The Hanoi omega-automata format
T. Babiak, F. Blahoudek, A. Duret Lutz, J. Klein, J. Kretinsky, D. Mueller, D. Parker, J. Strejček, in:, Springer, 2015, pp. 479–486.
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2015 | Conference Paper | IST-REx-ID: 1625
Detailed spatio-temporal reconstruction of eyelids
A. Bermano, T. Beeler, Y. Kozlov, D. Bradley, B. Bickel, M. Gross, in:, ACM, 2015.
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2015 | Conference Paper | IST-REx-ID: 1632   OA
A stream function solver for liquid simulations
R. Ando, N. Thuerey, C.J. Wojtan, in:, ACM, 2015.
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2015 | Conference Paper | IST-REx-ID: 1606
Runtime verification for hybrid analysis tools
L. Nguyen, C. Schilling, S. Bogomolov, T. Johnson, 9333 (2015) 281–286.
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2015 | Journal Article | IST-REx-ID: 1788
Strong opto-electro-mechanical coupling in a silicon photonic crystal cavity
A. Pitanti, J.M. Fink, A. Safavi Naeini, J. Hill, C. Lei, A. Tredicucci, O. Painter, Optics Express 23 (2015) 3196–3208.
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2015 | Journal Article | IST-REx-ID: 1694
Quantitative temporal simulation and refinement distances for timed systems
K. Chatterjee, V. Prabhu, IEEE Transactions on Automatic Control 60 (2015) 2291–2306.
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2015 | Journal Article | IST-REx-ID: 1699   OA
Adaptive gene introgression after secondary contact
H. Uecker, D. Setter, J. Hermisson, Journal of Mathematical Biology 70 (2015) 1523–1580.
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2015 | Conference Paper | IST-REx-ID: 1668   OA
Relaxing full-codebook security: A refined analysis of key-length extension schemes
P. Gazi, J. Lee, Y. Seurin, J. Steinberger, S. Tessaro, 9054 (2015) 319–341.
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2015 | Conference Paper | IST-REx-ID: 1670
PDDL+ planning with hybrid automata: Foundations of translating must behavior
S. Bogomolov, D. Magazzeni, S. Minopoli, M. Wehrle, in:, AAAI Press, 2015, pp. 42–46.
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2015 | Conference Paper | IST-REx-ID: 1675
Proofs of space
S. Dziembowski, S. Faust, V. Kolmogorov, K.Z. Pietrzak, 9216 (2015) 585–605.
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2015 | Journal Article | IST-REx-ID: 1682   OA
Robust satisfiability of systems of equations
P. Franek, M. Krcál, Journal of the ACM 62 (2015).
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2015 | Journal Article | IST-REx-ID: 1687   OA
Navigating in tissue mazes: Chemoattractant interpretation in complex environments
M. Sarris, M.K. Sixt, Current Opinion in Cell Biology 36 (2015) 93–102.
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2015 | Journal Article | IST-REx-ID: 1663
Complex regulation of CREB-binding protein by homeodomain-interacting protein kinase 2
K. Kovács, M. Steinmann, O. Halfon, P. Magistretti, J. Cardinaux, Cellular Signalling 27 (2015) 2252–2260.
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2015 | Conference Paper | IST-REx-ID: 1858   OA View | DOI | Download (ext.) | arXiv
 

2015 | Conference Paper | IST-REx-ID: 1860   OA
Classifier adaptation at prediction time
A. Royer, C. Lampert, in:, IEEE, 2015, pp. 1401–1409.
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2015 | Journal Article | IST-REx-ID: 1865
Plant embryogenesis requires AUX/LAX-mediated auxin influx
H. Robert, W. Grunewald, M. Sauer, B. Cannoot, M. Soriano, R. Swarup, D. Weijers, M. Bennett, K. Boutilier, J. Friml, Development 142 (2015) 702–711.
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2015 | Journal Article | IST-REx-ID: 1827   OA
Evolution of bow-tie architectures in biology
T. Friedlander, A. Mayo, T. Tlusty, U. Alon, PLoS Computational Biology 11 (2015).
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2015 | Journal Article | IST-REx-ID: 1834   OA View | Files available | DOI
 

2015 | Journal Article | IST-REx-ID: 1803
Basolateral amygdala bidirectionally modulates stress induced hippocampal learning and memory deficits through a p25/Cdk5-dependent pathway
D. Rei, X. Mason, J. Seo, J. Gräff, A. Rudenko, J. Wang, R. Rueda, S. Siegert, S. Cho, R. Canter, A. Mungenast, K. Deisseroth, L. Tsai, PNAS 112 (2015) 7291–7296.
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2015 | Journal Article | IST-REx-ID: 1808
Guest editors' introduction to special issue on computational methods in systems biology
A. Gupta, T.A. Henzinger, ACM Transactions on Modeling and Computer Simulation 25 (2015).
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2015 | Journal Article | IST-REx-ID: 1810   OA
Antimicrobial interactions: Mechanisms and implications for drug discovery and resistance evolution
M.T. Bollenbach, Current Opinion in Microbiology 27 (2015) 1–9.
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2015 | Journal Article | IST-REx-ID: 1846
Refinement checking on parametric modal transition systems
N. Beneš, J. Kretinsky, K. Larsen, M. Möller, S. Sickert, J. Srba, Acta Informatica 52 (2015) 269–297.
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2015 | Conference Paper | IST-REx-ID: 1839   OA
Multigain: A controller synthesis tool for MDPs with multiple mean-payoff objectives
T. Brázdil, K. Chatterjee, V. Forejt, A. Kučera, 9035 (2015) 181–187.
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2015 | Journal Article | IST-REx-ID: 1841   OA
A new look at reweighted message passing
V. Kolmogorov, IEEE Transactions on Pattern Analysis and Machine Intelligence 37 (2015) 919–930.
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2015 | Conference Paper | IST-REx-ID: 1992   OA
Succinct representation of concurrent trace sets
A. Gupta, T.A. Henzinger, A. Radhakrishna, R. Samanta, T. Tarrach, in:, ACM, 2015, pp. 433–444.
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2015 | Journal Article | IST-REx-ID: 1997   OA
The three-state toric homogeneous Markov chain model has Markov degree two
P. Noren, Journal of Symbolic Computation 68/Part 2 (2015) 285–296.
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2015 | Journal Article | IST-REx-ID: 2008   OA
Iterative scaling in curved exponential families
A. Klimova, T. Rudas, Scandinavian Journal of Statistics 42 (2015) 832–847.
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2015 | Journal Article | IST-REx-ID: 2034   OA
Probabilistic opacity for Markov decision processes
B. Bérard, K. Chatterjee, N. Sznajder, Information Processing Letters 115 (2015) 52–59.
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2015 | Journal Article | IST-REx-ID: 2166   OA
The Altshuler-Shklovskii formulas for random band matrices I: the unimodular case
L. Erdös, A. Knowles, Communications in Mathematical Physics 333 (2015) 1365–1416.
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2015 | Journal Article | IST-REx-ID: 260
Erratum Rational points on intersections of cubic and quadric hypersurfaces
T.D. Browning, R. Dietmann, R. Heath Brown, Journal of the Institute of Mathematics of Jussieu 14 (2015).
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2015 | Book Chapter | IST-REx-ID: 258
A survey of applications of the circle method to rational points
T.D. Browning, in:, Arithmetic and Geometry, Cambridge University Press, 2015, pp. 89–113.
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2015 | Journal Article | IST-REx-ID: 1598
Average case analysis of the classical algorithm for Markov decision processes with Büchi objectives
K. Chatterjee, M. Joglekar, N. Shah, Theoretical Computer Science 573 (2015) 71–89.
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2015 | Journal Article | IST-REx-ID: 354
Electron doping in bottom up engineered thermoelectric nanomaterials through HCl mediated ligand displacement
M. Ibanez, R. Korkosz, Z. Luo, P. Riba, D. Cadavid, S. Ortega, A. Cabot, M. Kanatzidis, Journal of the American Chemical Society 137 (2015) 4046–4049.
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2015 | Journal Article | IST-REx-ID: 361
Cu2ZnSnS4–PtM (M = Co, Ni) nanoheterostructures for photocatalytic hydrogen evolution
X. Yu, X. An, A. Genç, M. Ibanez, J. Arbiol, Y. Zhang, A. Cabot, Journal of Physical Chemistry C 119 (2015) 21882–21888.
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2015 | Conference Paper | IST-REx-ID: 1512
Bounding Helly numbers via Betti numbers
X. Goaoc, P. Paták, Z. Patakova, M. Tancer, U. Wagner, in:, ACM, 2015, pp. 507–521.
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