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381 Publications


2015 | Journal Article | IST-REx-ID: 832
Real time analysis of lateral root organogenesis in arabidopsis
P. Marhavý, E. Benková, Bio-Protocol 5 (2015).
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2015 | Journal Article | IST-REx-ID: 8456
Observing the overall rocking motion of a protein in a crystal
P. Ma, Y. Xue, N. Coquelle, J.D. Haller, T. Yuwen, I. Ayala, O. Mikhailovskii, D. Willbold, J.-P. Colletier, N.R. Skrynnikov, P. Schanda, Nature Communications 6 (2015).
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2015 | Journal Article | IST-REx-ID: 8457 View | DOI
 

2015 | Journal Article | IST-REx-ID: 848
A model of substitution trajectories in sequence space and long-term protein evolution
D. Usmanova, L. Ferretti, I. Povolotskaya, P. Vlasov, F. Kondrashov, Molecular Biology and Evolution 32 (2015) 542–554.
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2015 | Journal Article | IST-REx-ID: 8495
A note on micro-instability for Hamiltonian systems close to integrable
A. Bounemoura, V. Kaloshin, Proceedings of the American Mathematical Society 144 (2015) 1553–1560.
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2015 | Journal Article | IST-REx-ID: 8498
Arnold diffusion for smooth convex systems of two and a half degrees of freedom
V. Kaloshin, K. Zhang, Nonlinearity 28 (2015) 2699–2720.
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2015 | Journal Article | IST-REx-ID: 8499
Growth of Sobolev norms in the cubic defocusing nonlinear Schrödinger equation
M. Guardia, V. Kaloshin, Journal of the European Mathematical Society 17 (2015) 71–149.
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2015 | Journal Article | IST-REx-ID: 866
Massively parallel enzyme kinetics reveals the substrate recognition landscape of the metalloprotease ADAMTS13
C. Kretz, M. Dai, O. Soylemez, A. Yee, K. Desch, D. Siemieniak, K. Tomberg, F. Kondrashov, F. Meng, D. Ginsburg, PNAS 112 (2015) 9328–9333.
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2015 | Journal Article | IST-REx-ID: 1686 View | DOI
 

2015 | Journal Article | IST-REx-ID: 1687 | OA
Navigating in tissue mazes: Chemoattractant interpretation in complex environments
M. Sarris, M.K. Sixt, Current Opinion in Cell Biology 36 (2015) 93–102.
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2015 | Journal Article | IST-REx-ID: 1688 | OA
Bounds for Pach's selection theorem and for the minimum solid angle in a simplex
R. Karasev, J. Kynčl, P. Paták, Z. Patakova, M. Tancer, Discrete & Computational Geometry 54 (2015) 610–636.
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2015 | Conference Paper | IST-REx-ID: 1689 | OA
Temporal logic control for stochastic linear systems using abstraction refinement of probabilistic games
M. Svoreňová, J. Kretinsky, M. Chmelik, K. Chatterjee, I. Cěrná, C. Belta, in:, Proceedings of the 18th International Conference on Hybrid Systems: Computation and Control, ACM, 2015, pp. 259–268.
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2015 | Conference Paper | IST-REx-ID: 1690
HYST: A source transformation and translation tool for hybrid automaton models
S. Bak, S. Bogomolov, T. Johnson, in:, Springer, 2015, pp. 128–133.
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2015 | Conference Paper | IST-REx-ID: 1691
Temporal logic motion planning using POMDPs with parity objectives: Case study paper
M. Svoreňová, M. Chmelik, K. Leahy, H. Eniser, K. Chatterjee, I. Cěrná, C. Belta, in:, Proceedings of the 18th International Conference on Hybrid Systems: Computation and Control, ACM, 2015, pp. 233–238.
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2015 | Conference Paper | IST-REx-ID: 1692
Eliminating spurious transitions in reachability with support functions
G. Frehse, S. Bogomolov, M. Greitschus, T. Strump, A. Podelski, in:, Proceedings of the 18th International Conference on Hybrid Systems: Computation and Control, ACM, 2015, pp. 149–158.
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2015 | Journal Article | IST-REx-ID: 1693 | OA
Quantum interference effects in laser spectroscopy of muonic hydrogen, deuterium, and helium-3
P. Amaro, B. Franke, J. Krauth, M. Diepold, F. Fratini, L. Safari, J. Machado, A. Antognini, F. Kottmann, P. Indelicato, R. Pohl, J. Santos, Physical Review A 92 (2015).
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2015 | Journal Article | IST-REx-ID: 1694
Quantitative temporal simulation and refinement distances for timed systems
K. Chatterjee, V. Prabhu, IEEE Transactions on Automatic Control 60 (2015) 2291–2306.
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2015 | Journal Article | IST-REx-ID: 1695 | OA
Evaluation techniques for Gutzwiller wave functions in finite dimensions
J. Kaczmarczyk, T. Schickling, J. Bünemann, Physica Status Solidi (B): Basic Solid State Physics 252 (2015) 2059–2071.
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2015 | Journal Article | IST-REx-ID: 1696 | OA View | DOI | Download Preprint (ext.)
 

2015 | Journal Article | IST-REx-ID: 1697 | OA
High accuracy decoding of dynamical motion from a large retinal population
O. Marre, V. Botella Soler, K. Simmons, T. Mora, G. Tkačik, M. Berry, PLoS Computational Biology 11 (2015).
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2015 | Journal Article | IST-REx-ID: 1698 | OA
The complexity of multi-mean-payoff and multi-energy games
Y. Velner, K. Chatterjee, L. Doyen, T.A. Henzinger, A. Rabinovich, J. Raskin, Information and Computation 241 (2015) 177–196.
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2015 | Journal Article | IST-REx-ID: 1699 | OA
Adaptive gene introgression after secondary contact
H. Uecker, D. Setter, J. Hermisson, Journal of Mathematical Biology 70 (2015) 1523–1580.
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2015 | Journal Article | IST-REx-ID: 1700 | OA
Ultralong-range order in the Fermi-Hubbard model with long-range interactions
E. Van Loon, M. Katsnelson, M. Lemeshko, Physical Review B 92 (2015).
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2015 | Journal Article | IST-REx-ID: 1701 | OA
Thermodynamics and signatures of criticality in a network of neurons
G. Tkačik, T. Mora, O. Marre, D. Amodei, S. Palmer, M. Berry Ii, W. Bialek, PNAS 112 (2015) 11508–11513.
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2015 | Journal Article | IST-REx-ID: 1703 View | DOI
 

2015 | Journal Article | IST-REx-ID: 1704 | OA
Note on a family of monotone quantum relative entropies
A. Deuchert, C. Hainzl, R. Seiringer, Letters in Mathematical Physics 105 (2015) 1449–1466.
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2015 | Conference Paper | IST-REx-ID: 1706 | OA
Multi-task and lifelong learning of kernels
A. Pentina, S. Ben David, in:, Springer, 2015, pp. 194–208.
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2015 | Journal Article | IST-REx-ID: 1709 | OA
Biological auctions with multiple rewards
J. Reiter, A. Kanodia, R. Gupta, M. Nowak, K. Chatterjee, Proceedings of the Royal Society of London Series B Biological Sciences 282 (2015).
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2015 | Journal Article | IST-REx-ID: 1710 | OA
Minimal resistance of curves under the single impact assumption
A. Akopyan, A. Plakhov, Society for Industrial and Applied Mathematics 47 (2015) 2754–2769.
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2015 | Journal Article | IST-REx-ID: 1712 | OA
Drosophila immune cell migration and adhesion during embryonic development and larval immune responses
A. Ratheesh, V. Belyaeva, D.E. Siekhaus, Current Opinion in Cell Biology 36 (2015) 71–79.
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2015 | Conference Paper | IST-REx-ID: 1714
A framework for automated competitive analysis of on-line scheduling of firm-deadline tasks
K. Chatterjee, A. Pavlogiannis, A. Kößler, U. Schmid, in:, Real-Time Systems Symposium, IEEE, 2015, pp. 118–127.
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2015 | Journal Article | IST-REx-ID: 1728
Ptch1 and Gli regulate Shh signalling dynamics via multiple mechanisms
M. Cohen, A. Kicheva, A. Ribeiro, R. Blassberg, K. Page, C. Barnes, J. Briscoe, Nature Communications 6 (2015).
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2015 | Journal Article | IST-REx-ID: 1730 | OA
Discrete systolic inequalities and decompositions of triangulated surfaces
É. Colin De Verdière, A. Hubard, A.N. de Mesmay, Discrete & Computational Geometry 53 (2015) 587–620.
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2015 | Journal Article | IST-REx-ID: 1731 | OA
Randomness for free
K. Chatterjee, L. Doyen, H. Gimbert, T.A. Henzinger, Information and Computation 245 (2015) 3–16.
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2015 | Conference Paper | IST-REx-ID: 1732 | OA
Qualitative analysis of POMDPs with temporal logic specifications for robotics applications
K. Chatterjee, M. Chmelik, R. Gupta, A. Kanodia, in:, IEEE, 2015, pp. 325–330.
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2015 | Journal Article | IST-REx-ID: 1734
Recent advances in facial appearance capture
O. Klehm, F. Rousselle, M. Papas, D. Bradley, C. Hery, B. Bickel, W. Jarosz, T. Beeler, Computer Graphics Forum 34 (2015) 709–733.
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2015 | Journal Article | IST-REx-ID: 1735 | OA
A dimension-reduced pressure solver for liquid simulations
R. Ando, N. Thürey, C.J. Wojtan, Computer Graphics Forum 34 (2015) 473–480.
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2015 | Journal Article | IST-REx-ID: 1788
Strong opto-electro-mechanical coupling in a silicon photonic crystal cavity
A. Pitanti, J.M. Fink, A. Safavi Naeini, J. Hill, C. Lei, A. Tredicucci, O. Painter, Optics Express 23 (2015) 3196–3208.
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2015 | Journal Article | IST-REx-ID: 1789 | OA
Loss-of-function variants of SETD5 cause intellectual disability and the core phenotype of microdeletion 3p25.3 syndrome
Kuechler A, Zink A, Wieland T, Lüdecke H, Cremer K, Salviati L, Magini P, Najafi K, Zweier C, Czeschik J, Aretz S, Endele S, Tamburrino F, Pinato C, Clementi M, Gundlach J, Maylahn C, Mazzanti L, Wohlleber E, Schwarzmayr T, Kariminejad R, Schlessinger A, Wieczorek D, Strom T, Novarino G, Engels H. 2015. Loss-of-function variants of SETD5 cause intellectual disability and the core phenotype of microdeletion 3p25.3 syndrome. European Journal of Human Genetics. 23(6), 753–760.
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2015 | Journal Article | IST-REx-ID: 1792
A Koksma-Hlawka inequality for general discrepancy systems
F. Pausinger, A. Svane, Journal of Complexity 31 (2015) 773–797.
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2015 | Journal Article | IST-REx-ID: 1793 | OA View | Files available | DOI
 

2015 | Journal Article | IST-REx-ID: 1802
The schizophrenia risk gene product miR-137 alters presynaptic plasticity
S. Siegert, J. Seo, E. Kwon, A. Rudenko, S. Cho, W. Wang, Z. Flood, A. Martorell, M. Ericsson, A. Mungenast, L. Tsai, Nature Neuroscience 18 (2015) 1008–1016.
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2015 | Journal Article | IST-REx-ID: 1803
Basolateral amygdala bidirectionally modulates stress induced hippocampal learning and memory deficits through a p25/Cdk5-dependent pathway
D. Rei, X. Mason, J. Seo, J. Gräff, A. Rudenko, J. Wang, R. Rueda, S. Siegert, S. Cho, R. Canter, A. Mungenast, K. Deisseroth, L. Tsai, PNAS 112 (2015) 7291–7296.
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2015 | Journal Article | IST-REx-ID: 1804 | OA
Transition to turbulence in Taylor-Couette ferrofluidic flow
S. Altmeyer, Y. Do, Y. Lai, Scientific Reports 5 (2015).
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2015 | Journal Article | IST-REx-ID: 1805
Homological reconstruction and simplification in R3
D. Attali, U. Bauer, O. Devillers, M. Glisse, A. Lieutier, Computational Geometry: Theory and Applications 48 (2015) 606–621.
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2015 | Journal Article | IST-REx-ID: 1807 | OA
Sharp interface limit for two components Bose-Einstein condensates
M. Goldman, J. Royo-Letelier, ESAIM - Control, Optimisation and Calculus of Variations 21 (2015) 603–624.
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2015 | Journal Article | IST-REx-ID: 1808
Guest editors' introduction to special issue on computational methods in systems biology
A. Gupta, T.A. Henzinger, ACM Transactions on Modeling and Computer Simulation 25 (2015).
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2015 | Journal Article | IST-REx-ID: 1810 | OA
Antimicrobial interactions: Mechanisms and implications for drug discovery and resistance evolution
M.T. Bollenbach, Current Opinion in Microbiology 27 (2015) 1–9.
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2015 | Journal Article | IST-REx-ID: 1811 | OA
Analytical evaluation of atomic form factors: Application to Rayleigh scattering
L. Safari, J. Santos, P. Amaro, K. Jänkälä, F. Fratini, Journal of Mathematical Physics 56 (2015).
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2015 | Journal Article | IST-REx-ID: 1812 | OA
Exotic roton excitations in quadrupolar Bose–Einstein condensates
M. Lahrz, M. Lemeshko, L. Mathey, New Journal of Physics 17 (2015).
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