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365 Publications


2015 | Journal Article | IST-REx-ID: 1556 | OA
Jia, Yuebin, Huiyu Tian, Hongjiang Li, Qianqian Yu, Lei Wang, Jiří Friml, and Zhaojun Ding. “The Arabidopsis Thaliana Elongator Complex Subunit 2 Epigenetically Affects Root Development.” Journal of Experimental Botany 66, no. 15 (2015): 4631–42. https://doi.org/10.1093/jxb/erv230.
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2015 | Journal Article | IST-REx-ID: 1557
Javdani, Fariba, Krisztina Holló, Krisztina Hegedűs, Gréta Kis, Zoltán Hegyi, Klaudia Dócs, Yu Kasugai, Yugo Fukazawa, Ryuichi Shigemoto, and Miklós Antal. “Differential Expression Patterns of K+Cl- Cotransporter 2 in Neurons within the Superficial Spinal Dorsal Horn of Rats.” Journal of Comparative Neurology 523, no. 13 (2015): 1967–83. https://doi.org/10.1002/cne.23774.
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2015 | Journal Article | IST-REx-ID: 1558
Ivanchenko, Maria, Jinsheng Zhu, Bangjun Wang, Eva Medvecka, Yunlong Du, Elisa Azzarello, Stefano Mancuso, et al. “The Cyclophilin a DIAGEOTROPICA Gene Affects Auxin Transport in Both Root and Shoot to Control Lateral Root Formation.” Development 142, no. 4 (2015): 712–21. https://doi.org/10.1242/dev.113225.
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2015 | Journal Article | IST-REx-ID: 1559 | OA
Ibsen-Jensen, Rasmus, Krishnendu Chatterjee, and Martin Nowak. “Computational Complexity of Ecological and Evolutionary Spatial Dynamics.” PNAS 112, no. 51 (2015): 15636–41. https://doi.org/10.1073/pnas.1511366112.
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2015 | Journal Article | IST-REx-ID: 1560
Hons, Miroslav, and Michael K Sixt. “The Lymph Node Filter Revealed.” Nature Immunology 16, no. 4 (2015): 338–40. https://doi.org/10.1038/ni.3126.
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2015 | Journal Article | IST-REx-ID: 1561
Heger, Klaus, Maike Kober, David Rieß, Christoph Drees, Ingrid De Vries, Arianna Bertossi, Axel Roers, Michael K Sixt, and Marc Schmidt Supprian. “A Novel Cre Recombinase Reporter Mouse Strain Facilitates Selective and Efficient Infection of Primary Immune Cells with Adenoviral Vectors.” European Journal of Immunology 45, no. 6 (2015): 1614–20. https://doi.org/10.1002/eji.201545457.
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2015 | Journal Article | IST-REx-ID: 1562
Grones, Peter, Xu Chen, Sibu Simon, Walter Kaufmann, Riet De Rycke, Tomasz Nodzyński, Eva Zažímalová, and Jirí Friml. “Auxin-Binding Pocket of ABP1 Is Crucial for Its Gain-of-Function Cellular and Developmental Roles.” Journal of Experimental Botany 66, no. 16 (2015): 5055–65. https://doi.org/10.1093/jxb/erv177.
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2015 | Journal Article | IST-REx-ID: 1563
Graff, Grzegorz, and Pawel Pilarczyk. “An Algorithmic Approach to Estimating the Minimal Number of Periodic Points for Smooth Self-Maps of Simply-Connected Manifolds.” Topological Methods in Nonlinear Analysis 45, no. 1 (2015): 273–86. https://doi.org/10.12775/TMNA.2015.014.
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2015 | Journal Article | IST-REx-ID: 1564 | OA
Gilson, Matthieu, Cristina Savin, and Friedemann Zenke. “Editorial: Emergent Neural Computation from the Interaction of Different Forms of Plasticity.” Frontiers in Computational Neuroscience 9, no. 11 (2015). https://doi.org/10.3389/fncom.2015.00145.
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2015 | Journal Article | IST-REx-ID: 1565 | OA
Gavello, Daniela, David H Vandael, Sara Gosso, Emilio Carbone, and Valentina Carabelli. “Dual Action of Leptin on Rest-Firing and Stimulated Catecholamine Release via Phosphoinositide 3-Kinase-Riven BK Channel up-Regulation in Mouse Chromaffin Cells.” Journal of Physiology 593, no. 22 (2015): 4835–53. https://doi.org/10.1113/JP271078.
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2015 | Journal Article | IST-REx-ID: 1566 | OA
Gómez Sicilia, Àngel, Mateusz K Sikora, Marek Cieplak, and Mariano Carrión Vázquez. “An Exploration of the Universe of Polyglutamine Structures.” PLoS Computational Biology 11, no. 10 (2015). https://doi.org/10.1371/journal.pcbi.1004541.
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2015 | Conference Paper | IST-REx-ID: 1567
Edelsbrunner, Herbert. “Shape, Homology, Persistence, and Stability.” Lecture Notes in Computer Science. Springer, 2015.
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2015 | Conference Paper | IST-REx-ID: 1568
Dunaeva, Olga, Herbert Edelsbrunner, Anton Lukyanov, Michael Machin, and Daria Malkova. “The Classification of Endoscopy Images with Persistent Homology.” In Proceedings - 16th International Symposium on Symbolic and Numeric Algorithms for Scientific Computing, 7034731. IEEE, 2015. https://doi.org/10.1109/SYNASC.2014.81.
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2015 | Journal Article | IST-REx-ID: 1569 | OA
Doyle, Siamsa, Ash Haegera, Thomas Vain, Adeline Rigala, Corrado Viotti, Małgorzata Łangowskaa, Qian Maa, et al. “An Early Secretory Pathway Mediated by Gnom-like 1 and Gnom Is Essential for Basal Polarity Establishment in Arabidopsis Thaliana.” PNAS 112, no. 7 (2015): E806–15. https://doi.org/10.1073/pnas.1424856112.
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2015 | Journal Article | IST-REx-ID: 1570 | OA
Der, Ralf, and Georg S Martius. “Novel Plasticity Rule Can Explain the Development of Sensorimotor Intelligence.” PNAS 112, no. 45 (2015): E6224–32. https://doi.org/10.1073/pnas.1508400112.
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2015 | Journal Article | IST-REx-ID: 1571
De Vos, Marjon, Alexandre Dawid, Vanda Šunderlíková, and Sander Tans. “Breaking Evolutionary Constraint with a Tradeoff Ratchet.” PNAS 112, no. 48 (2015): 14906–11. https://doi.org/10.1073/pnas.1510282112.
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2015 | Journal Article | IST-REx-ID: 1572 | OA
Correggi, Michele, Alessandro Giuliani, and Robert Seiringer. “Validity of the Spin-Wave Approximation for the Free Energy of the Heisenberg Ferromagnet.” Communications in Mathematical Physics 339, no. 1 (2015): 279–307. https://doi.org/10.1007/s00220-015-2402-0.
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2015 | Journal Article | IST-REx-ID: 1573 | OA
Chen, Thomas, Christian Hainzl, Nataša Pavlović, and Robert Seiringer. “Unconditional Uniqueness for the Cubic Gross Pitaevskii Hierarchy via Quantum de Finetti.” Communications on Pure and Applied Mathematics 68, no. 10 (2015): 1845–84. https://doi.org/10.1002/cpa.21552.
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2015 | Journal Article | IST-REx-ID: 1574 | OA
Chen, Qian, Yang Liu, Steven Maere, Eunkyoung Lee, Gert Van Isterdael, Zidian Xie, Wei Xuan, et al. “A Coherent Transcriptional Feed-Forward Motif Model for Mediating Auxin-Sensitive PIN3 Expression during Lateral Root Development.” Nature Communications 6 (2015). https://doi.org/10.1038/ncomms9821.
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2015 | Journal Article | IST-REx-ID: 1575 | OA
Chabaud, Mélanie, Mélina Heuzé, Marine Bretou, Pablo Vargas, Paolo Maiuri, Paola Solanes, Mathieu Maurin, et al. “Cell Migration and Antigen Capture Are Antagonistic Processes Coupled by Myosin II in Dendritic Cells.” Nature Communications 6 (2015). https://doi.org/10.1038/ncomms8526.
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2015 | Journal Article | IST-REx-ID: 1576 | OA
Cepeda Humerez, Sarah A, Georg Rieckh, and Gasper Tkacik. “Stochastic Proofreading Mechanism Alleviates Crosstalk in Transcriptional Regulation.” Physical Review Letters 115, no. 24 (2015). https://doi.org/10.1103/PhysRevLett.115.248101.
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2015 | Journal Article | IST-REx-ID: 1577 | OA
Carvalho, Antonio, Beatriz Vicoso, Claudia Russo, Bonnielin Swenor, and Andrew Clark. “Birth of a New Gene on the Y Chromosome of Drosophila Melanogaster.” PNAS 112, no. 40 (2015): 12450–55. https://doi.org/10.1073/pnas.1516543112.
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2015 | Journal Article | IST-REx-ID: 1578
Cao, Thanhtung, Herbert Edelsbrunner, and Tiowseng Tan. “Triangulations from Topologically Correct Digital Voronoi Diagrams.” Computational Geometry 48, no. 7 (2015): 507–19. https://doi.org/10.1016/j.comgeo.2015.04.001.
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2015 | Journal Article | IST-REx-ID: 1580 | OA
Brenes, Oscar, David H Vandael, Emilio Carbone, Pier Montarolo, and Mirella Ghirardi. “Knock-down of Synapsin Alters Cell Excitability and Action Potential Waveform by Potentiating BK and Voltage Gated Ca2 Currents in Helix Serotonergic Neurons.” Neuroscience 311 (2015): 430–43. https://doi.org/10.1016/j.neuroscience.2015.10.046.
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2015 | Journal Article | IST-REx-ID: 1581
Bollenbach, Mark Tobias, and Carl-Philipp J Heisenberg. “Gradients Are Shaping Up.” Cell 161, no. 3 (2015): 431–32. https://doi.org/10.1016/j.cell.2015.04.009.
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2015 | Journal Article | IST-REx-ID: 1582 | OA
Biedl, Therese, Martin Held, Stefan Huber, Dominik Kaaser, and Peter Palfrader. “Weighted Straight Skeletons in the Plane.” Computational Geometry: Theory and Applications 48, no. 2 (2015): 120–33. https://doi.org/10.1016/j.comgeo.2014.08.006.
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2015 | Journal Article | IST-REx-ID: 1583 | OA
Biedl, Therese, Martin Held, Stefan Huber, Dominik Kaaser, and Peter Palfrader. “A Simple Algorithm for Computing Positively Weighted Straight Skeletons of Monotone Polygons.” Information Processing Letters 115, no. 2 (2015): 243–47. https://doi.org/10.1016/j.ipl.2014.09.021.
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2015 | Journal Article | IST-REx-ID: 1584 | OA
Biedl, Therese, Martin Held, Stefan Huber, Dominik Kaaser, and Peter Palfrader. “Reprint of: Weighted Straight Skeletons in the Plane.” Computational Geometry: Theory and Applications 48, no. 5 (2015): 429–42. https://doi.org/10.1016/j.comgeo.2015.01.004.
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2015 | Journal Article | IST-REx-ID: 1585
Bao, Zhigang, Guangming Pan, and Wang Zhou. “Asymptotic Mutual Information Statistics of MIMO Channels and CLT of Sample Covariance Matrices.” IEEE Transactions on Information Theory 61, no. 6 (2015): 3413–26. https://doi.org/10.1109/TIT.2015.2421894.
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2015 | Journal Article | IST-REx-ID: 1586
Angermayr, Andreas, Aleix Gorchs, and Klaas Hellingwerf. “Metabolic Engineering of Cyanobacteria for the Synthesis of Commodity Products.” Trends in Biotechnology 33, no. 6 (2015): 352–61. https://doi.org/10.1016/j.tibtech.2015.03.009.
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2015 | Journal Article | IST-REx-ID: 1587 | OA
Amaro, Pedro, Filippo Fratini, Laleh Safari, Aldo Antognini, Paul Indelicato, Randolf Pohl, and José Santos. “Quantum Interference Shifts in Laser Spectroscopy with Elliptical Polarization.” Physical Review A - Atomic, Molecular, and Optical Physics 92, no. 6 (2015): 062506. https://doi.org/10.1103/PhysRevA.92.062506.
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2015 | Journal Article | IST-REx-ID: 1588
Altmeyer, Sebastian, Younghae Do, and Ying Lai. “Ring-Bursting Behavior En Route to Turbulence in Narrow-Gap Taylor-Couette Flows.” Physical Review E 92, no. 5 (2015). https://doi.org/10.1103/PhysRevE.92.053018.
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2015 | Journal Article | IST-REx-ID: 1589 | OA
Altmeyer, Sebastian, Younghae Do, and Ying Lai. “Magnetic Field Induced Flow Pattern Reversal in a Ferrofluidic Taylor-Couette System.” Scientific Reports 5 (2015). https://doi.org/10.1038/srep18589.
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2015 | Book Chapter | IST-REx-ID: 1590 | OA
Aichholzer, Oswin, Therese Biedl, Thomas Hackl, Martin Held, Stefan Huber, Peter Palfrader, and Birgit Vogtenhuber. “Representing Directed Trees as Straight Skeletons.” In Graph Drawing and Network Visualization, 9411:335–47. Lecture Notes in Computer Science. Springer, 2015. https://doi.org/10.1007/978-3-319-27261-0_28.
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2015 | Journal Article | IST-REx-ID: 1591 | OA
Adamowski, Maciek, and Jirí Friml. “PIN-Dependent Auxin Transport: Action, Regulation, and Evolution.” Plant Cell 27, no. 1 (2015): 20–32. https://doi.org/10.1105/tpc.114.134874.
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2015 | Journal Article | IST-REx-ID: 1593 | OA
Žádníková, Petra, Dajo Smet, Qiang Zhu, Dominique Van Der Straeten, and Eva Benková. “Strategies of Seedlings to Overcome Their Sessile Nature: Auxin in Mobility Control.” Frontiers in Plant Science 6, no. 4 (2015). https://doi.org/10.3389/fpls.2015.00218.
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2015 | Conference Paper | IST-REx-ID: 1594
Forejt, Vojtěch, Jan Krčál, and Jan Kretinsky. “Controller Synthesis for MDPs and Frequency LTL\GU,” 9450:162–77. Springer, 2015. https://doi.org/10.1007/978-3-662-48899-7_12.
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2015 | Conference Paper | IST-REx-ID: 1595 | OA
Fulek, Radoslav, Michael Pelsmajer, and Marcus Schaefer. “Hanani-Tutte for Radial Planarity,” 9411:99–110. Springer, 2015. https://doi.org/10.1007/978-3-319-27261-0_9.
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2015 | Conference Paper | IST-REx-ID: 1596 | OA
Fulek, Radoslav, and Radoš Radoičić. “Vertical Visibility among Parallel Polygons in Three Dimensions.” Lecture Notes in Computer Science. Springer, 2015. https://doi.org/10.1007/978-3-319-27261-0_31.
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2015 | Journal Article | IST-REx-ID: 1598 | OA
Chatterjee, Krishnendu, Manas Joglekar, and Nisarg Shah. “Average Case Analysis of the Classical Algorithm for Markov Decision Processes with Büchi Objectives.” Theoretical Computer Science 573, no. 3 (2015): 71–89. https://doi.org/10.1016/j.tcs.2015.01.050.
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2015 | Conference Paper | IST-REx-ID: 1601 | OA
Babiak, Tomáš, František Blahoudek, Alexandre Duret Lutz, Joachim Klein, Jan Kretinsky, Daniel Mueller, David Parker, and Jan Strejček. “The Hanoi Omega-Automata Format,” 9206:479–86. Springer, 2015. https://doi.org/10.1007/978-3-319-21690-4_31.
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2015 | Journal Article | IST-REx-ID: 1602 | OA
Chatterjee, Krishnendu, Rasmus Ibsen-Jensen, Andreas Pavlogiannis, and Prateesh Goyal. “Faster Algorithms for Algebraic Path Properties in Recursive State Machines with Constant Treewidth.” ACM SIGPLAN Notices 50, no. 1 (2015): 97–109. https://doi.org/10.1145/2676726.2676979.
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2015 | Conference Paper | IST-REx-ID: 1603 | OA
Brázdil, Tomáš, Krishnendu Chatterjee, Martin Chmelik, Andreas Fellner, and Jan Kretinsky. “Counterexample Explanation by Learning Small Strategies in Markov Decision Processes,” 9206:158–77. Springer, 2015. https://doi.org/10.1007/978-3-319-21690-4_10.
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2015 | Journal Article | IST-REx-ID: 1604
Chatterjee, Krishnendu, Andreas Pavlogiannis, and Yaron Velner. “Quantitative Interprocedural Analysis.” Proceedings of the 42nd Annual ACM SIGPLAN-SIGACT 50, no. 1 (2015): 539–51. https://doi.org/10.1145/2676726.2676968.
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2015 | Conference Paper | IST-REx-ID: 1605 | OA
Bogomolov, Sergiy, Christian Schilling, Ezio Bartocci, Grégory Batt, Hui Kong, and Radu Grosu. “Abstraction-Based Parameter Synthesis for Multiaffine Systems,” 9434:19–35. Springer, 2015. https://doi.org/10.1007/978-3-319-26287-1_2.
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2015 | Conference Paper | IST-REx-ID: 1606
Nguyen, Luan, Christian Schilling, Sergiy Bogomolov, and Taylor Johnson. “Runtime Verification for Hybrid Analysis Tools.” Lecture Notes in Computer Science. Springer, 2015. https://doi.org/10.1007/978-3-319-23820-3_19.
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2015 | Conference Paper | IST-REx-ID: 1607 | OA
Chatterjee, Krishnendu, Rasmus Ibsen-Jensen, and Andreas Pavlogiannis. “Faster Algorithms for Quantitative Verification in Constant Treewidth Graphs,” 9206:140–57. Springer, 2015. https://doi.org/10.1007/978-3-319-21690-4_9.
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2015 | Conference Paper | IST-REx-ID: 1609 | OA
Chatterjee, Krishnendu, Laurent Doyen, and Moshe Vardi. “The Complexity of Synthesis from Probabilistic Components.” Lecture Notes in Computer Science. Springer, 2015. https://doi.org/10.1007/978-3-662-47666-6_9.
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2015 | Conference Paper | IST-REx-ID: 1610
Chatterjee, Krishnendu, Thomas A Henzinger, Rasmus Ibsen-Jensen, and Jan Otop. “Edit Distance for Pushdown Automata.” Lecture Notes in Computer Science. Springer, 2015. https://doi.org/10.1007/978-3-662-47666-6_10.
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2015 | Journal Article | IST-REx-ID: 1611 | OA
Whitfield, Jason, William Zhang, Michel Herde, Ben Clifton, Johanna Radziejewski, Harald L Janovjak, Christian Henneberger, and Colin Jackson. “Construction of a Robust and Sensitive Arginine Biosensor through Ancestral Protein Reconstruction.” Protein Science 24, no. 9 (2015): 1412–22. https://doi.org/10.1002/pro.2721.
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2015 | Journal Article | IST-REx-ID: 1614 | OA
Strüber, Michael, Peter M Jonas, and Marlene Bartos. “Strength and Duration of Perisomatic GABAergic Inhibition Depend on Distance between Synaptically Connected Cells.” PNAS 112, no. 4 (2015): 1220–25. https://doi.org/10.1073/pnas.1412996112.
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2015 | Journal Article | IST-REx-ID: 1615 | OA
Hammer, Matthieu, Dilja Krueger Burg, Liam Tuffy, Benjamin Cooper, Holger Taschenberger, Sarit Goswami, Hannelore Ehrenreich, et al. “Perturbed Hippocampal Synaptic Inhibition and γ-Oscillations in a Neuroligin-4 Knockout Mouse Model of Autism.” Cell Reports 13, no. 3 (2015): 516–23. https://doi.org/10.1016/j.celrep.2015.09.011.
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2015 | Journal Article | IST-REx-ID: 1618 | OA
Veldkamp, Christopher, Eva Kiermaier, Skylar Gabel Eissens, Miranda Gillitzer, David Lippner, Frank Disilvio, Casey Mueller, et al. “Solution Structure of CCL19 and Identification of Overlapping CCR7 and PSGL-1 Binding Sites.” Biochemistry 54, no. 27 (2015): 4163–66. https://doi.org/10.1021/acs.biochem.5b00560.
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2015 | Journal Article | IST-REx-ID: 1619 | OA
Chevereau, Guillaume, Marta Lukacisinova, Tugce Batur, Aysegul Guvenek, Dilay Ayhan, Erdal Toprak, and Mark Tobias Bollenbach. “Quantifying the Determinants of Evolutionary Dynamics Leading to Drug Resistance.” PLoS Biology 13, no. 11 (2015). https://doi.org/10.1371/journal.pbio.1002299.
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2015 | Journal Article | IST-REx-ID: 1623 | OA
Hammar, Petter, Andreas Angermayr, Staffan Sjostrom, Josefin Van Der Meer, Klaas Hellingwerf, Elton Hudson, and Hakaan Joensson. “Single-Cell Screening of Photosynthetic Growth and Lactate Production by Cyanobacteria.” Biotechnology for Biofuels 8, no. 1 (2015). https://doi.org/10.1186/s13068-015-0380-2.
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2015 | Journal Article | IST-REx-ID: 1624 | OA
Pavlogiannis, Andreas, Krishnendu Chatterjee, Ben Adlam, and Martin Nowak. “Cellular Cooperation with Shift Updating and Repulsion.” Scientific Reports 5 (2015). https://doi.org/10.1038/srep17147.
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2015 | Conference Paper | IST-REx-ID: 1625
Bermano, Amit, Thabo Beeler, Yeara Kozlov, Derek Bradley, Bernd Bickel, and Markus Gross. “Detailed Spatio-Temporal Reconstruction of Eyelids,” Vol. 34. ACM, 2015. https://doi.org/10.1145/2766924.
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2015 | Conference Paper | IST-REx-ID: 1626
Martin, Tobias, Nobuyuki Umetani, and Bernd Bickel. “OmniAD: Data-Driven Omni-Directional Aerodynamics,” Vol. 34. ACM, 2015. https://doi.org/10.1145/2766919.
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2015 | Conference Paper | IST-REx-ID: 1627
Pérez, Jesús, Bernhard Thomaszewski, Stelian Coros, Bernd Bickel, José Canabal, Robert Sumner, and Miguel Otaduy. “Design and Fabrication of Flexible Rod Meshes,” Vol. 34. ACM, 2015. https://doi.org/10.1145/2766998.
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2015 | Conference Paper | IST-REx-ID: 1628 | OA
Schumacher, Christian, Bernd Bickel, Jan Rys, Steve Marschner, Chiara Daraio, and Markus Gross. “Microstructures to Control Elasticity in 3D Printing,” 34:136. ACM, 2015. https://doi.org/10.1145/2766926.
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2015 | Journal Article | IST-REx-ID: 594
Sainsbury, Sarah, Carrie Bernecky, and Patrick Cramer. “Structural Basis of Transcription Initiation by RNA Polymerase II.” Nature Reviews Molecular Cell Biology 16, no. 3 (2015): 129–43. https://doi.org/10.1038/nrm3952.
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2015 | Preprint | IST-REx-ID: 8183 | OA
Avvakumov, Sergey, Isaac Mabillard, A. Skopenkov, and Uli Wagner. “Eliminating Higher-Multiplicity Intersections, III. Codimension 2.” arXiv, n.d.
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2015 | Journal Article | IST-REx-ID: 1513 | OA
Pal, Arka, and Beatriz Vicoso. “The X Chromosome of Hemipteran Insects: Conservation, Dosage Compensation and Sex-Biased Expression.” Genome Biology and Evolution 7, no. 12 (2015): 3259–68. https://doi.org/10.1093/gbe/evv215.
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2015 | Journal Article | IST-REx-ID: 1827 | OA
Friedlander, Tamar, Avraham Mayo, Tsvi Tlusty, and Uri Alon. “Evolution of Bow-Tie Architectures in Biology.” PLoS Computational Biology 11, no. 3 (2015). https://doi.org/10.1371/journal.pcbi.1004055.
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2015 | Journal Article | IST-REx-ID: 1579 | OA
Brooks, Christopher, Abraham Martin del Campo Sanchez, and Frank Sottile. “Galois Groups of Schubert Problems of Lines Are at Least Alternating.” Transactions of the American Mathematical Society 367, no. 6 (2015): 4183–4206. https://doi.org/10.1090/S0002-9947-2014-06192-8.
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