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309 Publications


2011 | Book Chapter | IST-REx-ID: 2922
Graph-cut Based Image Segmentation with Connectivity Priors
S. Vicente, V. Kolmogorov, C. Rother, in:, A. Blake, P. Kohli, C. Rother (Eds.), Markov Random Fields for Vision and Image Processing, Massachusetts Institute of Technology Press, 2011.
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2011 | Book Chapter | IST-REx-ID: 2923
Analyzing Convex Relaxations for MAP Estimation
M.P. Kumar, V. Kolmogorov, P. Torr, in:, A. Blake, P. Kohli, C. Rother (Eds.), Markov Random Fields for Vision and Image Processing, Massachusetts Institute of Technology Press, 2011.
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2011 | Book Chapter | IST-REx-ID: 2924
Bilayer Segmentation of Video
A. Criminisi, G. Cross, A. Blake, V. Kolmogorov, in:, A. Blake, P. Kohli, C. Rother (Eds.), Markov Random Fields for Vision and Image Processing, Massachusetts Institute of Technology Press, 2011.
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2011 | Book Chapter | IST-REx-ID: 2925
Interactive Foreground Extraction using graph cut
C. Rother, V. Kolmogorov, Y. Boykov, A. Blake, in:, A. Blake, P. Kohli, C. Rother (Eds.), Markov Random Fields for Vision and Image Processing, Massachusetts Institute of Technology Press, 2011.
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2011 | Book Chapter | IST-REx-ID: 2935
Basic graph cut algorithms
Y. Boykov, V. Kolmogorov, in:, A. Blake, P. Kohli, C. Rother (Eds.), Markov Random Fields for Vision and Image Processing, Massachusetts Institute of Technology Press, 2011, pp. 31–50.
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2011 | Journal Article | IST-REx-ID: 2961 | OA
Detecting epistasis via Markov bases
A. Malaspinas, C. Uhler, Journal of Algebraic Statistics 2 (2011) 36–53.
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2011 | Conference Paper | IST-REx-ID: 2960
Privacy Preserving GWAS Data Sharing
S. Fienberg, A. Slavkovic, C. Uhler, in:, IEEE, 2011.
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2011 | Conference Paper | IST-REx-ID: 2975
A Framework for Practical Universally Composable Zero-Knowledge Protocols
J. Camenisch, S. Krenn, V. Shoup, in:, D. Lee, X. Wang (Eds.), Springer, 2011, pp. 449–467.
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2011 | Conference Paper | IST-REx-ID: 2977
cPLC - A Cryptographic Programming Language and Compiler
E. Bangerter, S. Krenn, M. Seifriz, U. Ultes Nitsche, in:, H. Venter, M. Coetzee, M. Loock (Eds.), IEEE, 2011.
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2011 | Conference Paper | IST-REx-ID: 2976
Cache Games - Bringing Access-Based Cache Attacks on AES to Practice
D. Gullasch, E. Bangerter, S. Krenn, in:, IEEE, 2011, pp. 490–505.
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2011 | Journal Article | IST-REx-ID: 3092 | OA
Feedback models for polarized auxin transport: An emerging trend
K.T. Wabnik, W. Govaerts, J. Friml, J. Kleine Vehn, Molecular BioSystems 7 (2011) 2352–2359.
[Published Version] View | DOI | Download Published Version (ext.) | PubMed | Europe PMC
 

2011 | Journal Article | IST-REx-ID: 3089
Inositol trisphosphate-induced ca^2+ signaling modulates auxin transport and pin polarity
J. Zhang, S. Vanneste, P. Brewer, M. Michniewicz, P. Grones, J. Kleine Vehn, C. Löfke, T. Teichmann, A. Bielach, B. Cannoot, K. Hoyerová, X. Chen, H. Xue, E. Benková, E. Zažímalová, J. Friml, Developmental Cell 20 (2011) 855–866.
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2011 | Journal Article | IST-REx-ID: 3090
Cell plate restricted association of DRP1A and PIN proteins is required for cell polarity establishment in arabidopsis
J. Mravec, J. Petrášek, N. Li, S. Boeren, R. Karlova, S. Kitakura, M. Pařezová, S. Naramoto, T. Nodzyński, P. Dhonukshe, S. Bednarek, E. Zažímalová, S. De Vries, J. Friml, Current Biology 21 (2011) 1055–1060.
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2011 | Journal Article | IST-REx-ID: 3088
A mutually inhibitory interaction between auxin and cytokinin specifies vascular pattern in roots
A. Bishopp, H. Help, S. El Showk, D. Weijers, B. Scheres, J. Friml, E. Benková, A. Mähönen, Y. Helariutta, Current Biology 21 (2011) 917–926.
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2011 | Journal Article | IST-REx-ID: 3093
Monoubiquitin dependent endocytosis of the Iron Regulated Transporter 1 IRT1 transporter controls iron uptake in plants
M. Barberon, E. Zelazny, S. Robert, G. Conéjéro, C. Curie, J. Friml, G. Vert, PNAS 108 (2011) E450–E458.
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2011 | Journal Article | IST-REx-ID: 3094
Polarization of PIN3 dependent auxin transport for hypocotyl gravitropic response in Arabidopsis thaliana
H. Rakusová, J. Gallego Bartolomé, M. Vanstraelen, H. Robert, D. Alabadí, M. Blázquez, E. Benková, J. Friml, Plant Journal 67 (2011) 817–826.
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2011 | Journal Article | IST-REx-ID: 3091 | OA
Fleeting hormone cues get stabilized for plant organogenesis
M. Sauer, J. Friml, Molecular Systems Biology 7 (2011).
[Published Version] View | DOI | Download Published Version (ext.) | PubMed | Europe PMC
 

2011 | Journal Article | IST-REx-ID: 3102
Auxin Dependent cell cycle reactivation through transcriptional regulation of arabidopsis E2Fa by lateral organ boundary proteins
B. Berckmans, V. Vassileva, S. Schmid, S. Maes, B. Parizot, S. Naramoto, Z. Magyar, C. Lessa Alvim Kamei, C. Koncz, L. Bögre, G. Persiau, G. De Jaeger, J. Friml, R. Simon, T. Beeckman, L. De Veyldera, Plant Cell 23 (2011) 3671–3683.
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2011 | Journal Article | IST-REx-ID: 3103
Clathrin-mediated endocytosis: The gateway into plant cells
X. Chen, N. Irani, J. Friml, Current Opinion in Plant Biology 14 (2011) 674–682.
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2011 | Journal Article | IST-REx-ID: 3147
Mosaic analysis with double markers reveals tumor cell of origin in glioma
C. Liu, J. Sage, M. Miller, R. Verhaak, S. Hippenmeyer, H. Vogel, O. Foreman, R. Bronson, A. Nishiyama, L. Luo, H. Zong, Cell 146 (2011) 209–221.
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2011 | Conference Paper | IST-REx-ID: 3206
Submodular decomposition framework for inference in associative Markov networks with global constraints
A. Osokin, D. Vetrov, V. Kolmogorov, in:, IEEE, 2011, pp. 1889–1896.
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2011 | Conference Paper | IST-REx-ID: 3205
Dynamic tree block coordinate ascent
D. Tarlow, D. Batra, P. Kohli, V. Kolmogorov, in:, Omnipress, 2011, pp. 113–120.
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2011 | Conference Paper | IST-REx-ID: 3207
Object cosegmentation
S. Vicente, C. Rother, V. Kolmogorov, in:, IEEE, 2011, pp. 2217–2224.
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2011 | Conference Paper | IST-REx-ID: 3240
Leftover hash lemma revisited
B. Barak, Y. Dodis, H. Krawczyk, O. Pereira, K.Z. Pietrzak, F. Standaert, Y. Yu, in:, Springer, 2011, pp. 1–20.
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2011 | Conference Paper | IST-REx-ID: 3264
Solving recursion-free Horn clauses over LI+UIF
A. Gupta, C. Popeea, A. Rybalchenko, in:, H. Yang (Ed.), Springer, 2011, pp. 188–203.
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2011 | Conference Paper | IST-REx-ID: 3266
Probabilistic joint image segmentation and labeling
A. Ion, J. Carreira, C. Sminchisescu, in:, NIPS Proceedings, Neural Information Processing Systems Foundation, 2011, pp. 1827–1835.
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2011 | Journal Article | IST-REx-ID: 3269 | OA
Perceptual global illumination cancellation in complex projection environments
Y. Sheng, B. Cutler, C. Chen, J. Nasman, Computer Graphics Forum 30 (2011) 1261–1268.
[Published Version] View | DOI | Download Published Version (ext.)
 

2011 | Journal Article | IST-REx-ID: 3267
Hardness results for homology localization
C. Chen, D. Freedman, Discrete & Computational Geometry 45 (2011) 425–448.
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2011 | Book Chapter | IST-REx-ID: 3268
Algebraic topology for computer vision
D. Freedman, C. Chen, in:, Computer Vision, Nova Science Publishers, 2011, pp. 239–268.
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2011 | Journal Article | IST-REx-ID: 3288 | OA
Multicomponent analysis of junctional movements regulated by Myosin II isoforms at the epithelial zonula adherens
M. Smutny, S. Wu, G. Gomez, S. Mangold, A. Yap, N. Hamilton, PLoS One 6 (2011).
[Published Version] View | Files available | DOI
 

2011 | Journal Article | IST-REx-ID: 3286
Cationic amphipathic peptides accumulate sialylated proteins and lipids in the plasma membrane of eukaryotic host cells
J. Weghuber, M. Aichinger, M. Brameshuber, S. Wieser, V. Ruprecht, B. Plochberger, J. Madl, A. Horner, S. Reipert, K. Lohner, T. Henics, G. Schuetz, Biochimica et Biophysica Acta (BBA) - Biomembranes 1808 (2011) 2581–2590.
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2011 | Journal Article | IST-REx-ID: 3287
What can we learn from single molecule trajectories?
V. Ruprecht, M. Axmann, S. Wieser, G. Schuetz, Current Protein & Peptide Science 12 (2011) 714–724.
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2011 | Journal Article | IST-REx-ID: 3285
Spot variation fluorescence correlation spectroscopy allows for superresolution chronoscopy of confinement times in membranes
V. Ruprecht, S. Wieser, D. Marguet, G. Schuetz, Biophysical Journal 100 (2011) 2839–2845.
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2011 | Conference Paper | IST-REx-ID: 3302 | OA
Static scheduling in clouds
T.A. Henzinger, A. Singh, V. Singh, T. Wies, D. Zufferey, in:, USENIX, 2011, pp. 1–6.
[Submitted Version] View | Files available
 

2011 | Conference Paper | IST-REx-ID: 3301 | OA
Tail approximation for the chemical master equation
T.A. Henzinger, M. Mateescu, in:, Tampere International Center for Signal Processing, 2011.
[Submitted Version] View | Files available
 

2011 | Conference Paper | IST-REx-ID: 3299 | OA
Propagation models for computing biochemical reaction networks
T.A. Henzinger, M. Mateescu, in:, Springer, 2011, pp. 1–3.
[Submitted Version] View | Files available | DOI
 

2011 | Conference Paper | IST-REx-ID: 3316 | OA
Specification-centered robustness
R. Bloem, K. Chatterjee, K. Greimel, T.A. Henzinger, B. Jobstmann, in:, 6th IEEE International Symposium on Industrial and Embedded Systems, IEEE, 2011, pp. 176–185.
[Published Version] View | DOI | Download Published Version (ext.)
 

2011 | Journal Article | IST-REx-ID: 3318 | OA [Submitted Version] View | DOI | Download Submitted Version (ext.)
 

2011 | Book Chapter | IST-REx-ID: 3335 | OA
Alpha, Betti and the Megaparsec Universe: On the topology of the Cosmic Web
R. Van De Weygaert, G. Vegter, H. Edelsbrunner, B. Jones, P. Pranav, C. Park, W. Hellwing, B. Eldering, N. Kruithof, P. Bos, J. Hidding, J. Feldbrugge, E. Ten Have, M. Van Engelen, M. Caroli, M. Teillaud, in:, M. Gavrilova, K. Tan, M. Mostafavi (Eds.), Transactions on Computational Science XIV, Springer, 2011, pp. 60–101.
[Preprint] View | DOI | Download Preprint (ext.) | arXiv
 

2011 | Conference Paper | IST-REx-ID: 3329 | OA
Deconstructing approximate offsets
E. Berberich, D. Halperin, M. Kerber, R. Pogalnikova, in:, Proceedings of the Twenty-Seventh Annual Symposium on Computational Geometry, ACM, 2011, pp. 187–196.
[Preprint] View | Files available | DOI | Download Preprint (ext.)
 

2011 | Journal Article | IST-REx-ID: 3332 | OA
A note on the complexity of real algebraic hypersurfaces
M. Kerber, M. Sagraloff, Graphs and Combinatorics 27 (2011) 419–430.
[Submitted Version] View | Files available | DOI
 

2011 | Conference Paper | IST-REx-ID: 3330 | OA
Root refinement for real polynomials
M. Kerber, M. Sagraloff, in:, Springer, 2011, pp. 209–216.
[Preprint] View | DOI | Download Preprint (ext.) | arXiv
 

2011 | Conference Paper | IST-REx-ID: 3328 | OA
A generic algebraic kernel for non linear geometric applications
E. Berberich, M. Hemmer, M. Kerber, in:, ACM, 2011, pp. 179–186.
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2011 | Journal Article | IST-REx-ID: 3334
Letter from the new editors-in-chief
H. Edelsbrunner, J. Pach, G. Ziegler, Discrete & Computational Geometry 45 (2011) 1–2.
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2011 | Journal Article | IST-REx-ID: 3353 | OA
A theory of synchronous relational interfaces
S. Tripakis, B. Lickly, T.A. Henzinger, E. Lee, ACM Transactions on Programming Languages and Systems (TOPLAS) 33 (2011).
[Submitted Version] View | Files available | DOI
 

2011 | Conference Paper | IST-REx-ID: 3355 | OA
Quantitative evaluation of BFT protocols
R. Halalai, T.A. Henzinger, V. Singh, in:, IEEE, 2011, pp. 255–264.
[Submitted Version] View | Files available | DOI
 

2011 | Conference Paper | IST-REx-ID: 3350
Minimum attention controller synthesis for omega regular objectives
K. Chatterjee, R. Majumdar, in:, U. Fahrenberg, S. Tripakis (Eds.), Springer, 2011, pp. 145–159.
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2011 | Conference Paper | IST-REx-ID: 3351 | OA
On memoryless quantitative objectives
K. Chatterjee, L. Doyen, R. Singh, in:, O. Owe, M. Steffen, J.A. Telle (Eds.), Springer, 2011, pp. 148–159.
[Submitted Version] View | DOI | Download Submitted Version (ext.)
 

2011 | Journal Article | IST-REx-ID: 3354
Qualitative concurrent parity games
K. Chatterjee, L. De Alfaro, T.A. Henzinger, ACM Transactions on Computational Logic (TOCL) 12 (2011).
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