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300 Publications
2011 | Book Chapter | IST-REx-ID: 2922
S. Vicente, V. Kolmogorov, and C. Rother, “Graph-cut Based Image Segmentation with Connectivity Priors,” in Markov Random Fields for Vision and Image Processing, A. Blake, P. Kohli, and C. Rother, Eds. Massachusetts Institute of Technology Press, 2011.
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2011 | Book Chapter | IST-REx-ID: 2923
M. P. Kumar, V. Kolmogorov, and P. Torr, “Analyzing Convex Relaxations for MAP Estimation,” in Markov Random Fields for Vision and Image Processing, A. Blake, P. Kohli, and C. Rother, Eds. Massachusetts Institute of Technology Press, 2011.
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2011 | Book Chapter | IST-REx-ID: 2924
A. Criminisi, G. Cross, A. Blake, and V. Kolmogorov, “Bilayer Segmentation of Video,” in Markov Random Fields for Vision and Image Processing, A. Blake, P. Kohli, and C. Rother, Eds. Massachusetts Institute of Technology Press, 2011.
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2011 | Book Chapter | IST-REx-ID: 2925
C. Rother, V. Kolmogorov, Y. Boykov, and A. Blake, “Interactive Foreground Extraction using graph cut,” in Markov Random Fields for Vision and Image Processing, A. Blake, P. Kohli, and C. Rother, Eds. Massachusetts Institute of Technology Press, 2011.
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2011 | Book Chapter | IST-REx-ID: 2935
Y. Boykov and V. Kolmogorov, “Basic graph cut algorithms,” in Markov Random Fields for Vision and Image Processing, A. Blake, P. Kohli, and C. Rother, Eds. Massachusetts Institute of Technology Press, 2011, pp. 31–50.
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2011 | Journal Article | IST-REx-ID: 2961 |

A. Malaspinas and C. Uhler, “Detecting epistasis via Markov bases,” Journal of Algebraic Statistics, vol. 2, no. 1. Public Knowledge Project, pp. 36–53, 2011.
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2011 | Conference Paper | IST-REx-ID: 2975
J. Camenisch, S. Krenn, and V. Shoup, “A Framework for Practical Universally Composable Zero-Knowledge Protocols,” presented at the ASIACRYPT: Theory and Application of Cryptology and Information Security, 2011, vol. 7073, pp. 449–467.
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2011 | Conference Paper | IST-REx-ID: 2976
D. Gullasch, E. Bangerter, and S. Krenn, “Cache Games - Bringing Access-Based Cache Attacks on AES to Practice,” presented at the S&P: IEEE Symposium on Security and Privacy, 2011, pp. 490–505.
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2011 | Journal Article | IST-REx-ID: 3091 |

M. Sauer and J. Friml, “Fleeting hormone cues get stabilized for plant organogenesis,” Molecular Systems Biology, vol. 7. Nature Publishing Group, 2011.
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| PubMed | Europe PMC
2011 | Journal Article | IST-REx-ID: 3092 |

K. T. Wabnik, W. Govaerts, J. Friml, and J. Kleine Vehn, “Feedback models for polarized auxin transport: An emerging trend,” Molecular BioSystems, vol. 7, no. 8. Royal Society of Chemistry, pp. 2352–2359, 2011.
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| PubMed | Europe PMC
2011 | Journal Article | IST-REx-ID: 3100 |

S. Vanneste et al., “Developmental regulation of CYCA2s contributes to tissue-specific proliferation in Arabidopsis ,” EMBO Journal, vol. 30, no. 16. Wiley-Blackwell, pp. 3430–3441, 2011.
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2011 | Journal Article | IST-REx-ID: 3101 |

M. Zwiewka et al., “The AP 3 adaptor complex is required for vacuolar function in Arabidopsis,” Cell Research, vol. 21, no. 12. Nature Publishing Group, pp. 1711–1722, 2011.
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2011 | Journal Article | IST-REx-ID: 3138
D. Sullivan, J. L. Csicsvari, K. Mizuseki, S. Montgomery, K. Diba, and G. Buzsáki, “Relationships between hippocampal sharp waves ripples and fast gamma oscillation Influence of dentate and entorhinal cortical activity,” Journal of Neuroscience, vol. 31, no. 23. Society for Neuroscience, pp. 8605–8616, 2011.
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| DOI
2011 | Conference Paper | IST-REx-ID: 3163
C. Lampert, “Maximum margin multi-label structured prediction,” presented at the NIPS: Neural Information Processing Systems, Granada, Spain, 2011.
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2011 | Conference Paper | IST-REx-ID: 3204
V. Kolmogorov, “Submodularity on a tree: Unifying Submodularity on a tree: Unifying L-convex and bisubmodular functions convex and bisubmodular functions,” presented at the MFCS: Mathematical Foundations of Computer Science, 2011, vol. 6907, pp. 400–411.
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2011 | Conference Paper | IST-REx-ID: 3205
D. Tarlow, D. Batra, P. Kohli, and V. Kolmogorov, “Dynamic tree block coordinate ascent,” presented at the ICML: International Conference on Machine Learning, 2011, pp. 113–120.
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2011 | Conference Paper | IST-REx-ID: 3206
A. Osokin, D. Vetrov, and V. Kolmogorov, “Submodular decomposition framework for inference in associative Markov networks with global constraints,” presented at the CVPR: Computer Vision and Pattern Recognition, 2011, pp. 1889–1896.
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2011 | Conference Paper | IST-REx-ID: 3238
E. Kiltz, K. Z. Pietrzak, D. Cash, A. Jain, and D. Venturi, “Efficient authentication from hard learning problems,” presented at the EUROCRYPT: Theory and Applications of Cryptographic Techniques, Tallinn, Estonia, 2011, vol. 6632, pp. 7–26.
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2011 | Conference Paper | IST-REx-ID: 3266
A. Ion, J. Carreira, and C. Sminchisescu, “Probabilistic joint image segmentation and labeling,” in NIPS Proceedings, Granada, Spain, 2011, vol. 24, pp. 1827–1835.
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2011 | Book Chapter | IST-REx-ID: 3268
D. Freedman and C. Chen, “Algebraic topology for computer vision,” in Computer Vision, Nova Science Publishers, 2011, pp. 239–268.
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2011 | Journal Article | IST-REx-ID: 3269 |

Y. Sheng, B. Cutler, C. Chen, and J. Nasman, “Perceptual global illumination cancellation in complex projection environments,” Computer Graphics Forum, vol. 30, no. 4. Wiley-Blackwell, pp. 1261–1268, 2011.
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2011 | Conference Paper | IST-REx-ID: 3270
C. Chen and M. Kerber, “Persistent homology computation with a twist,” presented at the EuroCG: European Workshop on Computational Geometry, Morschach, Switzerland, 2011, pp. 197–200.
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2011 | Thesis | IST-REx-ID: 3273
J.-L. Maître, “Mechanics of adhesion and de‐adhesion in zebrafish germ layer progenitors,” IST Austria, 2011.
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2011 | Thesis | IST-REx-ID: 3275 |

K. Schumann, “The role of chemotactic gradients in dendritic cell migration,” IST Austria, 2011.
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2011 | Journal Article | IST-REx-ID: 3276 |

J. Prentice, J. Homann, K. Simmons, G. Tkačik, V. Balasubramanian, and P. Nelson, “Fast, scalable, Bayesian spike identification for multi-electrode arrays,” PLoS One, vol. 6, no. 7. Public Library of Science, 2011.
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| DOI
2011 | Journal Article | IST-REx-ID: 3278
R. Vila, N. Pierce, D. Nash, and L. V. Ugelvig, “A phylogenetic revision of the Glaucopsyche section (Lepidoptera: Lycaenidae), with special focus on the Phengaris-Maculinea clade,” Molecular Phylogenetics and Evolution, vol. 61, no. 1. Elsevier, pp. 237–243, 2011.
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2011 | Journal Article | IST-REx-ID: 3285
V. Ruprecht, S. Wieser, D. Marguet, and G. Schuetz, “Spot variation fluorescence correlation spectroscopy allows for superresolution chronoscopy of confinement times in membranes,” Biophysical Journal, vol. 100, no. 11. Biophysical Society, pp. 2839–2845, 2011.
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| DOI
2011 | Journal Article | IST-REx-ID: 3288 |

M. Smutny, S. Wu, G. Gomez, S. Mangold, A. Yap, and N. Hamilton, “Multicomponent analysis of junctional movements regulated by Myosin II isoforms at the epithelial zonula adherens,” PLoS One, vol. 6, no. 7. Public Library of Science, 2011.
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| DOI
2011 | Journal Article | IST-REx-ID: 3290 |

K. Lohse, R. Harrison, and N. H. Barton, “A general method for calculating likelihoods under the coalescent process,” Genetics, vol. 189, no. 3. Genetics Society of America, pp. 977–987, 2011.
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2011 | Conference Paper | IST-REx-ID: 3297 |

C. J. Wojtan, M. Müller Fischer, and T. Brochu, “Liquid simulation with mesh-based surface tracking,” presented at the SIGGRAPH: Special Interest Group on Computer Graphics and Interactive Techniques, Vancouver, BC, Canada, 2011.
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2011 | Conference Paper | IST-REx-ID: 3298 |

K. Raveendran, C. J. Wojtan, and G. Turk, “Hybrid smoothed particle hydrodynamics,” presented at the SCA: ACM SIGGRAPH/Eurographics Symposium on Computer animation, Vancouver, Canada, 2011, pp. 33–42.
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| DOI
2011 | Conference Paper | IST-REx-ID: 3299 |

T. A. Henzinger and M. Mateescu, “Propagation models for computing biochemical reaction networks,” presented at the CMSB: Computational Methods in Systems Biology, Paris, France, 2011, pp. 1–3.
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| DOI
2011 | Conference Paper | IST-REx-ID: 3301 |

T. A. Henzinger and M. Mateescu, “Tail approximation for the chemical master equation,” presented at the WCSB: Workshop on Computational Systems Biology (TICSP), 2011.
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2011 | Conference Paper | IST-REx-ID: 3302 |

T. A. Henzinger, A. Singh, V. Singh, T. Wies, and D. Zufferey, “Static scheduling in clouds,” presented at the HotCloud: Workshop on Hot Topics in Cloud Computing, 2011, pp. 1–6.
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2011 | Conference Poster | IST-REx-ID: 3312 |

Y. Zheng, S. Gu, H. Edelsbrunner, C. Tomasi, and P. Benfey, Detailed reconstruction of 3D plant root shape. IEEE, 2011.
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2011 | Conference Paper | IST-REx-ID: 3313 |

C. Chen and H. Edelsbrunner, “Diffusion runs low on persistence fast,” in Proceedings of the IEEE International Conference on Computer Vision, Barcelona, Spain, 2011.
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2011 | Journal Article | IST-REx-ID: 3315 |

K. Chatterjee, T. A. Henzinger, and V. Prabhu, “Timed parity games: Complexity and robustness,” Logical Methods in Computer Science, vol. 7, no. 4. International Federation of Computational Logic, 2011.
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| DOI
2011 | Conference Paper | IST-REx-ID: 3316 |

R. Bloem, K. Chatterjee, K. Greimel, T. A. Henzinger, and B. Jobstmann, “Specification-centered robustness,” in 6th IEEE International Symposium on Industrial and Embedded Systems, Vasteras, Sweden, 2011, pp. 176–185.
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2011 | Journal Article | IST-REx-ID: 3318 |

E. Eggermann and P. M. Jonas, “How the ‘slow’ Ca(2+) buffer parvalbumin affects transmitter release in nanodomain coupling regimes at GABAergic synapses,” Nature Neuroscience, vol. 15. Nature Publishing Group, pp. 20–22, 2011.
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2011 | Conference Paper | IST-REx-ID: 3319
N. Quadrianto and C. Lampert, “Learning multi-view neighborhood preserving projections,” presented at the ICML: International Conference on Machine Learning, Bellevue, USA, 2011, pp. 425–432.
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2011 | Journal Article | IST-REx-ID: 3320 |

S. Nowozin and C. Lampert, “Structured learning and prediction in computer vision,” Foundations and Trends in Computer Graphics and Vision, vol. 6, no. 3–4. now, pp. 185–365, 2011.
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2011 | Conference Poster | IST-REx-ID: 3322
C. Lampert, Maximum margin multi label structured prediction. Neural Information Processing Systems, 2011.
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2011 | Conference Paper | IST-REx-ID: 3323
T. Wies, M. Muñiz, and V. Kuncak, “An efficient decision procedure for imperative tree data structures,” presented at the CADE 23: Automated Deduction , Wrocław, Poland, 2011, vol. 6803, pp. 476–491.
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2011 | Conference Paper | IST-REx-ID: 3324 |

R. Piskac and T. Wies, “Decision procedures for automating termination proofs,” presented at the VMCAI: Verification Model Checking and Abstract Interpretation, Texas, USA, 2011, vol. 6538, pp. 371–386.
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2011 | Conference Paper | IST-REx-ID: 3326 |

S. Almagor, U. Boker, and O. Kupferman, “What’s decidable about weighted automata ,” presented at the ATVA: Automated Technology for Verification and Analysis, Taipei, Taiwan, 2011, vol. 6996, pp. 482–491.
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2011 | Conference Paper | IST-REx-ID: 3328 |

E. Berberich, M. Hemmer, and M. Kerber, “A generic algebraic kernel for non linear geometric applications,” presented at the SCG: Symposium on Computational Geometry, Paris, France, 2011, pp. 179–186.
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2011 | Conference Paper | IST-REx-ID: 3329 |

E. Berberich, D. Halperin, M. Kerber, and R. Pogalnikova, “Deconstructing approximate offsets,” in Proceedings of the twenty-seventh annual symposium on Computational geometry, Paris, France, 2011, pp. 187–196.
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2011 | Conference Paper | IST-REx-ID: 3330 |

M. Kerber and M. Sagraloff, “Root refinement for real polynomials,” presented at the ISSAC: International Symposium on Symbolic and Algebraic Computation, California, USA, 2011, pp. 209–216.
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| arXiv
2011 | Journal Article | IST-REx-ID: 3332 |

M. Kerber and M. Sagraloff, “A note on the complexity of real algebraic hypersurfaces,” Graphs and Combinatorics, vol. 27, no. 3. Springer, pp. 419–430, 2011.
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2011 | Book Chapter | IST-REx-ID: 3335 |

R. Van De Weygaert et al., “Alpha, Betti and the Megaparsec Universe: On the topology of the Cosmic Web,” in Transactions on Computational Science XIV, vol. 6970, M. Gavrilova, K. Tan, and M. Mostafavi, Eds. Springer, 2011, pp. 60–101.
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| arXiv
2011 | Preprint | IST-REx-ID: 3338 |

K. Chatterjee, “Bounded rationality in concurrent parity games,” arXiv. ArXiv, pp. 1–51, 2011.
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| arXiv
2011 | Preprint | IST-REx-ID: 3339 |

K. Chatterjee, L. De Alfaro, and R. Pritam, “Magnifying lens abstraction for stochastic games with discounted and long-run average objectives,” arXiv. ArXiv, 2011.
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| arXiv
2011 | Conference Paper | IST-REx-ID: 3345 |

K. Chatterjee and L. Doyen, “Energy and mean-payoff parity Markov Decision Processes,” presented at the MFCS: Mathematical Foundations of Computer Science, Warsaw, Poland, 2011, vol. 6907, pp. 206–218.
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| arXiv
2011 | Conference Paper | IST-REx-ID: 3346 |

T. Brázdil, V. Brožek, K. Chatterjee, V. Forejt, and A. Kučera, “Two views on multiple mean payoff objectives in Markov Decision Processes,” presented at the LICS: Logic in Computer Science, Toronto, Canada, 2011.
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2011 | Conference Paper | IST-REx-ID: 3347 |

K. Chatterjee and N. Fijalkow, “Finitary languages,” presented at the LATA: Language and Automata Theory and Applications, Tarragona, Spain, 2011, vol. 6638, pp. 216–226.
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| arXiv
2011 | Conference Paper | IST-REx-ID: 3348 |

K. Chatterjee and V. Prabhu, “Synthesis of memory efficient real time controllers for safety objectives,” presented at the HSCC: Hybrid Systems - Computation and Control, Chicago, USA, 2011, pp. 221–230.
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2011 | Conference Paper | IST-REx-ID: 3349 |

K. Chatterjee and N. Fijalkow, “A reduction from parity games to simple stochastic games,” presented at the GandALF: Games, Automata, Logic, and Formal Verification, Minori, Italy, 2011, vol. 54, pp. 74–86.
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