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197 Publications


2006 | Journal Article | IST-REx-ID: 3009 | OA
T. Paciorek and J. Friml, “Auxin signaling,” Journal of Cell Science, vol. 119, no. 7, pp. 1199–1202, 2006.
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2006 | Journal Article | IST-REx-ID: 3010
E. Scarpella, D. Marcos, J. Friml, and T. Berleth, “Control of leaf vascular patterning by polar auxin transport,” Genes and Development, vol. 20, no. 8, pp. 1015–1027, 2006.
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2006 | Journal Article | IST-REx-ID: 3011
J. Wiśniewska et al., “Polar PIN localization directs auxin flow in plants,” Science, vol. 312, no. 5775, 2006.
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2006 | Journal Article | IST-REx-ID: 3012
J. Petrášek et al., “PIN proteins perform a rate-limiting function in cellular auxin efflux,” Science, vol. 312, no. 5775, pp. 914–918, 2006.
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2006 | Journal Article | IST-REx-ID: 3013
T. Paciorek, M. Sauer, J. Balla, J. Wiśniewska, and J. Friml, “Immunocytochemical technique for protein localization in sections of plant tissues,” Nature Protocols, vol. 1, no. 1, pp. 104–107, 2006.
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2006 | Journal Article | IST-REx-ID: 3014
P. Brewer, M. Heisler, J. Hejátko, J. Friml, and E. Benková, “In situ hybridization for mRNA detection in Arabidopsis tissue sections,” Nature Protocols, vol. 1, no. 3, pp. 1462–1467, 2006.
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2006 | Journal Article | IST-REx-ID: 3015
M. Sauer, T. Paciorek, E. Benková, and J. Friml, “Immunocytochemical techniques for whole mount in situ protein localization in plants,” Nature Protocols, vol. 1, no. 1, pp. 98–103, 2006.
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2006 | Journal Article | IST-REx-ID: 3016
M. Sauer et al., “Canalization of auxin flow by Aux/IAA-ARF-dependent feedback regulation of PIN polarity,” Genes and Development, vol. 20, no. 20, pp. 2902–2911, 2006.
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2006 | Journal Article | IST-REx-ID: 3017
H. Tanaka, P. Dhonukshe, P. Brewer, and J. Friml, “Spatiotemporal asymmetric auxin distribution: A means to coordinate plant development,” Cellular and Molecular Life Sciences, vol. 63, no. 23, pp. 2738–2754, 2006.
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2006 | Journal Article | IST-REx-ID: 3018
J. Kleine Vehn, P. Dhonukshe, R. Swarup, M. Bennett, and J. Friml, “Subcellular trafficking of the Arabidopsis auxin influx carrier AUX1 uses a novel pathway distinct from PIN1,” Plant Cell, vol. 18, no. 11, pp. 3171–3181, 2006.
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2006 | Journal Article | IST-REx-ID: 3020
J. Hejátko, I. Blilou, P. Brewer, J. Friml, B. Scheres, and E. Benková, “In situ hybridization technique for mRNA detection in whole mount Arabidopsis samples,” Nature Protocols, vol. 1, no. 4, pp. 1939–1946, 2006.
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2006 | Journal Article | IST-REx-ID: 3152
P. Kunwar, D. E. Siekhaus, and R. Lehmann, “In vivo migration A germ cell perspective,” Annual Review of Cell and Developmental Biology, vol. 22, pp. 237–265, 2006.
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2006 | Journal Article | IST-REx-ID: 1715
V. Dudu, T. Bittig, E. Entchev, A. Kicheva, F. Julicher, and M. González Gaitán, “Postsynaptic mad signaling at the Drosophila neuromuscular junction,” Current Biology, vol. 16, no. 7, pp. 625–635, 2006.
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2006 | Journal Article | IST-REx-ID: 1716
V. Dudu, T. Bittig, E. Entchev, A. Kicheva, F. Julicher, and M. González Gaitán, “Erratum: Postsynaptic mad signaling at the Drosophila neuromuscular junction,” Current Biology, vol. 16, no. 12, 2006.
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2006 | Journal Article | IST-REx-ID: 1745
G. Katsaros et al., “Investigating the lateral motion of SiGe islands by selective chemical etching,” Surface Science, vol. 600, no. 12, pp. 2608–2613, 2006.
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2006 | Journal Article | IST-REx-ID: 1746
G. Costantini et al., “Interplay between thermodynamics and kinetics in the capping of InAs/GaAs (001) quantum dots,” Physical Review Letters, vol. 96, no. 22, 2006.
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2006 | Journal Article | IST-REx-ID: 1747
A. Rastelli et al., “Reading the footprints of strained islands,” Microelectronics Journal, vol. 37, no. 12, pp. 1471–1476, 2006.
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2006 | Journal Article | IST-REx-ID: 1748
G. Katsaros et al., “Evolution of buried semiconductor nanostructures and origin of stepped surface mounds during capping,” Applied Physics Letters, vol. 89, no. 25, 2006.
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2006 | Journal Article | IST-REx-ID: 1796
S. Siegert, P. Schnierle, and B. Schnierle, “Novel anti-viral therapy: Drugs that block HIV entry at different target sites,” Mini-Reviews in Medicinal Chemistry, vol. 6, no. 5, pp. 557–562, 2006.
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2006 | Journal Article | IST-REx-ID: 1961
L. A. Sazanov and P. Hinchliffe, “Structure of the hydrophilic domain of respiratory complex I from Thermus thermophilus,” Science, vol. 311, no. 5766, pp. 1430–1436, 2006.
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2006 | Journal Article | IST-REx-ID: 1966
P. Hinchliffe, J. Carroll, and L. A. Sazanov, “Identification of a novel subunit of respiratory complex I from Thermus thermophilus,” Biochemistry, vol. 45, no. 14, pp. 4413–4420, 2006.
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2006 | Journal Article | IST-REx-ID: 854
E. Rogaev et al., “Complete mitochondrial genome and phylogeny of pleistocene mammoth Mammuthus primigenius,” PLoS Biology, vol. 4, no. 3, pp. 0403–0410, 2006.
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2006 | Journal Article | IST-REx-ID: 868
F. Kondrashov, E. Koonin, I. Morgunov, T. Finogenova, and M. Kondrashova, “Evolution of glyoxylate cycle enzymes in Metazoa Evidence of multiple horizontal transfer events and pseudogene formation,” Biology Direct, vol. 1, 2006.
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2006 | Journal Article | IST-REx-ID: 869
F. Kondrashov, A. Ogurtsov, and A. Kondrashov, “Selection in favor of nucleotides G and C diversifies evolution rates and levels of polymorphism at mammalian synonymous sites,” Journal of Theoretical Biology, vol. 240, no. 4, pp. 616–626, 2006.
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2006 | Journal Article | IST-REx-ID: 873
F. Kondrashov and A. Kondrashov, “Role of selection in fixation of gene duplications,” Journal of Theoretical Biology, vol. 239, no. 2, pp. 141–151, 2006.
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2006 | Journal Article | IST-REx-ID: 903
V. Babenko, M. Basu, F. Kondrashov, I. Rogozin, and E. Koonin, “Signs of positive selection of somatic mutations in human cancers detected by EST sequence analysis,” BMC Cancer, vol. 6, 2006.
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2006 | Journal Article | IST-REx-ID: 1461 | OA
T. Hausel and E. Swartz, “Intersection forms of toric hyperkähler varieties,” Proceedings of the American Mathematical Society, vol. 134, no. 8, pp. 2403–2409, 2006.
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2006 | Journal Article | IST-REx-ID: 1462 | OA
T. Hausel, “Betti numbers of holomorphic symplectic quotients via arithmetic Fourier transform,” PNAS, vol. 103, no. 16, pp. 6120–6124, 2006.
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2006 | Conference Paper | IST-REx-ID: 3180
R. Szeliski et al., “A comparative study of energy minimization methods for Markov random fields,” presented at the ECCV: European Conference on Computer Vision, 2006, vol. 3952, pp. 16–29.
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2006 | Conference Paper | IST-REx-ID: 3184
V. Kolmogorov and C. Rother, “Comparison of energy minimization algorithms for highly connected graphs,” presented at the ECCV: European Conference on Computer Vision, 2006, vol. 3952 LNCS, pp. 1–15.
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2006 | Journal Article | IST-REx-ID: 3185
V. Kolmogorov, A. Criminisi, A. Blake, G. Cross, and C. Rother, “Probabilistic fusion of stereo with color and contrast for bilayer segmentation,” IEEE Transactions on Pattern Analysis and Machine Intelligence, vol. 28, no. 9, pp. 1480–1492, 2006.
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2006 | Conference Paper | IST-REx-ID: 3186
Y. Boykov, V. Kolmogorov, D. Cremers, and A. Delong, “An integral solution to surface evolution PDEs via geo cuts,” presented at the ECCV: European Conference on Computer Vision, 2006, vol. 3953, pp. 409–422.
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2006 | Conference Paper | IST-REx-ID: 3188
C. Rother, V. Kolmogorov, T. Minka, and A. Blake, “Cosegmentation of image pairs by histogram matching - Incorporating a global constraint into MRFs,” presented at the CVPR: Computer Vision and Pattern Recognition, 2006, pp. 993–1000.
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2006 | Conference Paper | IST-REx-ID: 3189
A. Criminisi, G. Cross, A. Blake, and V. Kolmogorov, “Bilayer segmentation of live video,” presented at the CVPR: Computer Vision and Pattern Recognition, 2006, vol. 1, pp. 53–60.
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2006 | Journal Article | IST-REx-ID: 3190
V. Kolmogorov, “Convergent tree reweighted message passing for energy minimization,” IEEE Transactions on Pattern Analysis and Machine Intelligence, vol. 28, no. 10, pp. 1568–1583, 2006.
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2006 | Conference Paper | IST-REx-ID: 3214
U. Maurer, Y. Oswald, K. Z. Pietrzak, and J. Sjödin, “Luby Rackoff ciphers from weak round functions ,” presented at the EUROCRYPT: Theory and Applications of Cryptographic Techniques, 2006, vol. 4004, pp. 391–408.
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2006 | Conference Paper | IST-REx-ID: 3215
Y. Dodis, K. Z. Pietrzak, and B. Przydatek, “Separating sources for encryption and secret sharing,” presented at the TCC: Theory of Cryptography Conference, 2006, vol. 3876, pp. 601–616.
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2006 | Conference Paper | IST-REx-ID: 3216
K. Z. Pietrzak, “A tight bound for EMAC,” presented at the ICALP: Automata, Languages and Programming, 2006, vol. 4052, pp. 168–179.
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2006 | Conference Paper | IST-REx-ID: 3217
K. Z. Pietrzak, “Composition implies adaptive security in minicrypt,” presented at the EUROCRYPT: Theory and Applications of Cryptographic Techniques, 2006, vol. 4004, pp. 328–338.
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2006 | Book Chapter | IST-REx-ID: 3404
H. L. Janovjak, R. Sawhney, M. Stark, and D. Mueller, “Atomic force microscopy,” in Techniques in Microscopy for Biomedical Applications, vol. 2, World Scientific Publishing, 2006, pp. 213–284.
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2006 | Journal Article | IST-REx-ID: 3413
M. Kessler, K. Gottschalk, H. L. Janovjak, D. Mueller, and H. Gaub, “Bacteriorhodopsin folds into the membrane against an external force,” Journal of Molecular Biology, vol. 357, no. 2, pp. 644–654, 2006.
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2006 | Journal Article | IST-REx-ID: 3414
A. Kedrov, H. L. Janovjak, C. Ziegler, W. Kühlbrandt, and D. Mueller, “Observing folding pathways and kinetics of a single sodium-proton antiporter from Escherichia coli,” Journal of Molecular Biology, vol. 355, no. 1, pp. 2–8, 2006.
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2006 | Book Review | IST-REx-ID: 3415
H. L. Janovjak, A. Kedrov, D. Cisneros, T. Sapra, J. Struckmeier, and D. Mueller, “Imaging and detecting molecular interactions of single membrane proteins,” Neurobiology of Aging, vol. 27. Elsevier, pp. 546–561, 2006.
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2006 | Preprint | IST-REx-ID: 3431 | OA
G. Tkacik, E. Schneidman, M. Berry, and W. Bialek, “Ising models for networks of real neurons,” ArXiv. ArXiv, pp. 1–4, 2006.
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2006 | Journal Article | IST-REx-ID: 3437
A. Betancourt and J. P. Bollback, “Fitness effects of beneficial mutations: the mutational landscape model in experimental evolution,” Current Opinion in Genetics & Development, vol. 16, no. 6, pp. 618–623, 2006.
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2006 | Conference Paper | IST-REx-ID: 3449
K. Chatterjee, R. Jagadeesan, and C. Pitcher, “Games for controls,” presented at the CSF: Computer Security Foundations, 2006, pp. 70–82.
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2006 | Book Review | IST-REx-ID: 3463
J. Bischofberger, D. Engel, M. Frotscher, and P. M. Jonas, “Timing and efficacy of transmitter release at mossy fiber synapses in the hippocampal network. (Review),” Pflugers Archiv : European Journal of Physiology, vol. 453, no. 3. Springer, pp. 361–372, 2006.
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2006 | Conference Paper | IST-REx-ID: 3499
K. Chatterjee, “Nash equilibrium for upward-closed objectives,” presented at the CSL: Computer Science Logic, 2006, vol. 4207, pp. 271–286.
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2006 | Conference Paper | IST-REx-ID: 3500
K. Chatterjee, T. A. Henzinger, and N. Piterman, “Algorithms for Büchi Games,” presented at the GDV: Games in Design and Verification, 2006.
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2006 | Patent | IST-REx-ID: 3510
H. Edelsbrunner, P. Fu, D. Nekhayev, M. Facello, and S. Williams, “Method, apparatus and computer program products for automatically generating NURBS models of triangulated surfaces using homeomorphism.” Elsevier, 2006.
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