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197 Publications


2006 | Journal Article | IST-REx-ID: 3014
Brewer, P., Heisler, M., Hejátko, J., Friml, J., & Benková, E. (2006). In situ hybridization for mRNA detection in Arabidopsis tissue sections. Nature Protocols, 1(3), 1462–1467. https://doi.org/10.1038/nprot.2006.226
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2006 | Journal Article | IST-REx-ID: 3015
Sauer, M., Paciorek, T., Benková, E., & Friml, J. (2006). Immunocytochemical techniques for whole mount in situ protein localization in plants. Nature Protocols, 1(1), 98–103. https://doi.org/10.1038/nprot.2006.15
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2006 | Journal Article | IST-REx-ID: 3016
Sauer, M., Balla, J., Luschnig, C., Wiśniewska, J., Reinöhl, V., Friml, J., & Benková, E. (2006). Canalization of auxin flow by Aux/IAA-ARF-dependent feedback regulation of PIN polarity. Genes and Development, 20(20), 2902–2911. https://doi.org/10.1101/gad.390806
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2006 | Journal Article | IST-REx-ID: 3017
Tanaka, H., Dhonukshe, P., Brewer, P., & Friml, J. (2006). Spatiotemporal asymmetric auxin distribution: A means to coordinate plant development. Cellular and Molecular Life Sciences, 63(23), 2738–2754. https://doi.org/10.1007/s00018-006-6116-5
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2006 | Journal Article | IST-REx-ID: 3018
Kleine Vehn, J., Dhonukshe, P., Swarup, R., Bennett, M., & Friml, J. (2006). Subcellular trafficking of the Arabidopsis auxin influx carrier AUX1 uses a novel pathway distinct from PIN1. Plant Cell, 18(11), 3171–3181. https://doi.org/10.1105/tpc.106.042770
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2006 | Journal Article | IST-REx-ID: 3020
Hejátko, J., Blilou, I., Brewer, P., Friml, J., Scheres, B., & Benková, E. (2006). In situ hybridization technique for mRNA detection in whole mount Arabidopsis samples. Nature Protocols, 1(4), 1939–1946. https://doi.org/10.1038/nprot.2006.333
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2006 | Journal Article | IST-REx-ID: 3152
Kunwar, P., Siekhaus, D. E., & Lehmann, R. (2006). In vivo migration A germ cell perspective. Annual Review of Cell and Developmental Biology, 22, 237–265. https://doi.org/10.1146/annurev.cellbio.22.010305.103337
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2006 | Journal Article | IST-REx-ID: 1715
Dudu, V., Bittig, T., Entchev, E., Kicheva, A., Julicher, F., & González Gaitán, M. (2006). Postsynaptic mad signaling at the Drosophila neuromuscular junction. Current Biology, 16(7), 625–635. https://doi.org/10.1016/j.cub.2006.02.061
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2006 | Journal Article | IST-REx-ID: 1716
Dudu, V., Bittig, T., Entchev, E., Kicheva, A., Julicher, F., & González Gaitán, M. (2006). Erratum: Postsynaptic mad signaling at the Drosophila neuromuscular junction. Current Biology, 16(12). https://doi.org/10.1016/j.cub.2006.06.020
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2006 | Journal Article | IST-REx-ID: 1745
Katsaros, G., Rastelli, A., Stoffel, M., Isella, G., Von Känel, H., Bittner, A., … Kern, K. (2006). Investigating the lateral motion of SiGe islands by selective chemical etching. Surface Science, 600(12), 2608–2613. https://doi.org/10.1016/j.susc.2006.04.027
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2006 | Journal Article | IST-REx-ID: 1746
Costantini, G., Rastelli, A., Manzano, C., Acosta Diaz, P., Songmuang, R., Katsaros, G., … Kern, K. (2006). Interplay between thermodynamics and kinetics in the capping of InAs/GaAs (001) quantum dots. Physical Review Letters, 96(22). https://doi.org/10.1103/PhysRevLett.96.226106
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2006 | Journal Article | IST-REx-ID: 1747
Rastelli, A., Stoffel, M., Katsaros, G., Tersoff, J., Denker, U., Merdzhanova, T., … Schmidt, O. (2006). Reading the footprints of strained islands. Microelectronics Journal, 37(12), 1471–1476. https://doi.org/10.1016/j.mejo.2006.05.029
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2006 | Journal Article | IST-REx-ID: 1748
Katsaros, G., Rastelli, A., Stoffel, M., Costantini, G., Schmidt, O., Kern, K., … Von Känel, H. (2006). Evolution of buried semiconductor nanostructures and origin of stepped surface mounds during capping. Applied Physics Letters, 89(25). https://doi.org/10.1063/1.2405876
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2006 | Journal Article | IST-REx-ID: 1796
Siegert, S., Schnierle, P., & Schnierle, B. (2006). Novel anti-viral therapy: Drugs that block HIV entry at different target sites. Mini-Reviews in Medicinal Chemistry, 6(5), 557–562. https://doi.org/10.2174/138955706776876267
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2006 | Journal Article | IST-REx-ID: 1961
Sazanov, L. A., & Hinchliffe, P. (2006). Structure of the hydrophilic domain of respiratory complex I from Thermus thermophilus. Science, 311(5766), 1430–1436. https://doi.org/10.1126/science.1123809
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2006 | Journal Article | IST-REx-ID: 1966
Hinchliffe, P., Carroll, J., & Sazanov, L. A. (2006). Identification of a novel subunit of respiratory complex I from Thermus thermophilus. Biochemistry, 45(14), 4413–4420. https://doi.org/10.1021/bi0600998
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2006 | Journal Article | IST-REx-ID: 854
Rogaev, E., Moliaka, Y., Malyarchuk, B., Kondrashov, F., Derenko, M., Chumakov, I., & Grigorenko, A. (2006). Complete mitochondrial genome and phylogeny of pleistocene mammoth Mammuthus primigenius. PLoS Biology, 4(3), 0403–0410. https://doi.org/10.1371/journal.pbio.0040073
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2006 | Journal Article | IST-REx-ID: 868
Kondrashov, F., Koonin, E., Morgunov, I., Finogenova, T., & Kondrashova, M. (2006). Evolution of glyoxylate cycle enzymes in Metazoa Evidence of multiple horizontal transfer events and pseudogene formation. Biology Direct, 1. https://doi.org/10.1186/1745-6150-1-31
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2006 | Journal Article | IST-REx-ID: 869
Kondrashov, F., Ogurtsov, A., & Kondrashov, A. (2006). Selection in favor of nucleotides G and C diversifies evolution rates and levels of polymorphism at mammalian synonymous sites. Journal of Theoretical Biology, 240(4), 616–626. https://doi.org/10.1016/j.jtbi.2005.10.020
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2006 | Journal Article | IST-REx-ID: 873
Kondrashov, F., & Kondrashov, A. (2006). Role of selection in fixation of gene duplications. Journal of Theoretical Biology, 239(2), 141–151. https://doi.org/10.1016/j.jtbi.2005.08.033
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2006 | Journal Article | IST-REx-ID: 903
Babenko, V., Basu, M., Kondrashov, F., Rogozin, I., & Koonin, E. (2006). Signs of positive selection of somatic mutations in human cancers detected by EST sequence analysis. BMC Cancer, 6. https://doi.org/10.1186/1471-2407-6-36
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2006 | Journal Article | IST-REx-ID: 1461 | OA
Hausel, T., & Swartz, E. (2006). Intersection forms of toric hyperkähler varieties. Proceedings of the American Mathematical Society, 134(8), 2403–2409. https://doi.org/10.1090/S0002-9939-06-08248-7
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2006 | Journal Article | IST-REx-ID: 1462 | OA
Hausel, T. (2006). Betti numbers of holomorphic symplectic quotients via arithmetic Fourier transform. PNAS, 103(16), 6120–6124. https://doi.org/10.1073/pnas.0601337103
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2006 | Conference Paper | IST-REx-ID: 3180
Szeliski, R., Zabih, R., Scharstein, D., Veksler, O., Kolmogorov, V., Agarwala, A., … Rother, C. (2006). A comparative study of energy minimization methods for Markov random fields (Vol. 3952, pp. 16–29). Presented at the ECCV: European Conference on Computer Vision, Springer. https://doi.org/10.1007/11744047_2
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2006 | Conference Paper | IST-REx-ID: 3184
Kolmogorov, V., & Rother, C. (2006). Comparison of energy minimization algorithms for highly connected graphs (Vol. 3952 LNCS, pp. 1–15). Presented at the ECCV: European Conference on Computer Vision, Springer. https://doi.org/10.1007/11744047_1
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2006 | Journal Article | IST-REx-ID: 3185
Kolmogorov, V., Criminisi, A., Blake, A., Cross, G., & Rother, C. (2006). Probabilistic fusion of stereo with color and contrast for bilayer segmentation. IEEE Transactions on Pattern Analysis and Machine Intelligence, 28(9), 1480–1492. https://doi.org/10.1109/TPAMI.2006.193
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2006 | Conference Paper | IST-REx-ID: 3186
Boykov, Y., Kolmogorov, V., Cremers, D., & Delong, A. (2006). An integral solution to surface evolution PDEs via geo cuts (Vol. 3953, pp. 409–422). Presented at the ECCV: European Conference on Computer Vision, Springer. https://doi.org/10.1007/11744078_32
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2006 | Conference Paper | IST-REx-ID: 3188
Rother, C., Kolmogorov, V., Minka, T., & Blake, A. (2006). Cosegmentation of image pairs by histogram matching - Incorporating a global constraint into MRFs (pp. 993–1000). Presented at the CVPR: Computer Vision and Pattern Recognition, IEEE. https://doi.org/10.1109/CVPR.2006.91
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2006 | Conference Paper | IST-REx-ID: 3189
Criminisi, A., Cross, G., Blake, A., & Kolmogorov, V. (2006). Bilayer segmentation of live video (Vol. 1, pp. 53–60). Presented at the CVPR: Computer Vision and Pattern Recognition, IEEE. https://doi.org/10.1109/CVPR.2006.69
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2006 | Journal Article | IST-REx-ID: 3190
Kolmogorov, V. (2006). Convergent tree reweighted message passing for energy minimization. IEEE Transactions on Pattern Analysis and Machine Intelligence, 28(10), 1568–1583. https://doi.org/10.1109/TPAMI.2006.200
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2006 | Conference Paper | IST-REx-ID: 3214
Maurer, U., Oswald, Y., Pietrzak, K. Z., & Sjödin, J. (2006). Luby Rackoff ciphers from weak round functions (Vol. 4004, pp. 391–408). Presented at the EUROCRYPT: Theory and Applications of Cryptographic Techniques, Springer. https://doi.org/10.1007/11761679_24
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2006 | Conference Paper | IST-REx-ID: 3215
Dodis, Y., Pietrzak, K. Z., & Przydatek, B. (2006). Separating sources for encryption and secret sharing (Vol. 3876, pp. 601–616). Presented at the TCC: Theory of Cryptography Conference, Springer. https://doi.org/10.1007/11681878_31
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2006 | Conference Paper | IST-REx-ID: 3216
Pietrzak, K. Z. (2006). A tight bound for EMAC (Vol. 4052, pp. 168–179). Presented at the ICALP: Automata, Languages and Programming, Springer. https://doi.org/10.1007/11787006_15
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2006 | Conference Paper | IST-REx-ID: 3217
Pietrzak, K. Z. (2006). Composition implies adaptive security in minicrypt (Vol. 4004, pp. 328–338). Presented at the EUROCRYPT: Theory and Applications of Cryptographic Techniques, Springer. https://doi.org/10.1007/11761679_20
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2006 | Book Chapter | IST-REx-ID: 3404
Janovjak, H. L., Sawhney, R., Stark, M., & Mueller, D. (2006). Atomic force microscopy. In Techniques in Microscopy for Biomedical Applications (Vol. 2, pp. 213–284). World Scientific Publishing.
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2006 | Journal Article | IST-REx-ID: 3413
Kessler, M., Gottschalk, K., Janovjak, H. L., Mueller, D., & Gaub, H. (2006). Bacteriorhodopsin folds into the membrane against an external force. Journal of Molecular Biology, 357(2), 644–654. https://doi.org/10.1016/j.jmb.2005.12.065
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2006 | Journal Article | IST-REx-ID: 3414
Kedrov, A., Janovjak, H. L., Ziegler, C., Kühlbrandt, W., & Mueller, D. (2006). Observing folding pathways and kinetics of a single sodium-proton antiporter from Escherichia coli. Journal of Molecular Biology, 355(1), 2–8. https://doi.org/10.1016/j.jmb.2005.10.028
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2006 | Book Review | IST-REx-ID: 3415
Janovjak, H. L., Kedrov, A., Cisneros, D., Sapra, T., Struckmeier, J., & Mueller, D. (2006). Imaging and detecting molecular interactions of single membrane proteins. Neurobiology of Aging. Elsevier. https://doi.org/10.1016/j.neurobiolaging.2005.03.031
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2006 | Preprint | IST-REx-ID: 3431 | OA
Tkacik, G., Schneidman, E., Berry, M., & Bialek, W. (2006). Ising models for networks of real neurons. ArXiv. ArXiv.
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2006 | Journal Article | IST-REx-ID: 3437
Betancourt, A., & Bollback, J. P. (2006). Fitness effects of beneficial mutations: the mutational landscape model in experimental evolution. Current Opinion in Genetics & Development, 16(6), 618–623. https://doi.org/10.1016/j.gde.2006.10.006
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2006 | Conference Paper | IST-REx-ID: 3449
Chatterjee, K., Jagadeesan, R., & Pitcher, C. (2006). Games for controls (pp. 70–82). Presented at the CSF: Computer Security Foundations, IEEE. https://doi.org/10.1109/CSFW.2006.14
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2006 | Book Review | IST-REx-ID: 3463
Bischofberger, J., Engel, D., Frotscher, M., & Jonas, P. M. (2006). Timing and efficacy of transmitter release at mossy fiber synapses in the hippocampal network. (Review). Pflugers Archiv : European Journal of Physiology. Springer. https://doi.org/10.1007/s00424-006-0093-2
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2006 | Conference Paper | IST-REx-ID: 3499
Chatterjee, K. (2006). Nash equilibrium for upward-closed objectives (Vol. 4207, pp. 271–286). Presented at the CSL: Computer Science Logic, Springer. https://doi.org/10.1007/11874683_18
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2006 | Conference Paper | IST-REx-ID: 3500
Chatterjee, K., Henzinger, T. A., & Piterman, N. (2006). Algorithms for Büchi Games. Presented at the GDV: Games in Design and Verification, ACM.
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2006 | Patent | IST-REx-ID: 3510
Edelsbrunner, H., Fu, P., Nekhayev, D., Facello, M., & Williams, S. (2006). Method, apparatus and computer program products for automatically generating NURBS models of triangulated surfaces using homeomorphism. Elsevier. https://doi.org/US 6,996,505 B1
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2006 | Patent | IST-REx-ID: 3511
Fu, P., Nekhayev, D., & Edelsbrunner, H. (2006). Manufacturing methods and systems for rapid production of hearing-aid shells. Elsevier. https://doi.org/US 7,050,876 B1
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2006 | Patent | IST-REx-ID: 3512
Fletcher, Y., Gloth, T., Edelsbrunner, H., & Fu, P. (2006). Method, apparatus and computer products that reconstruct surfaces from data points. Elsevier. https://doi.org/US 7,023,432 B2
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2006 | Journal Article | IST-REx-ID: 3522
O’Neill, J., Senior, T., & Csicsvari, J. L. (2006). Place-selective firing of CA1 pyramidal cells during sharp wave/ripple network patterns in exploratory behavior. Neuron, 49(1), 143–155. https://doi.org/10.1016/j.neuron.2005.10.037
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2006 | Journal Article | IST-REx-ID: 3545
Magill, P., Pogosyan, A., Sharott, A., Csicsvari, J. L., Bolam, J., & Brown, P. (2006). Changes in functional connectivity within the rat striatopallidal axis during global brain activation in vivo. Journal of Neuroscience, 26(23), 6318–6329. https://doi.org/10.1523/​JNEUROSCI.0620-06.2006
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2006 | Conference Paper | IST-REx-ID: 3559
Cohen Steiner, D., Edelsbrunner, H., & Morozov, D. (2006). Vines and vineyards by updating persistence in linear time (pp. 119–126). Presented at the SCG: Symposium on Computational Geometry, ACM. https://doi.org/10.1145/1137856.1137877
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