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191 Publications


2006 | Journal Article | IST-REx-ID: 3017
Spatiotemporal asymmetric auxin distribution: A means to coordinate plant development
H. Tanaka, P. Dhonukshe, P. Brewer, J. Friml, Cellular and Molecular Life Sciences 63 (2006) 2738–2754.
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2006 | Journal Article | IST-REx-ID: 3018
Subcellular trafficking of the Arabidopsis auxin influx carrier AUX1 uses a novel pathway distinct from PIN1
J. Kleine Vehn, P. Dhonukshe, R. Swarup, M. Bennett, J. Friml, Plant Cell 18 (2006) 3171–3181.
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2006 | Journal Article | IST-REx-ID: 3020
In situ hybridization technique for mRNA detection in whole mount Arabidopsis samples
J. Hejátko, I. Blilou, P. Brewer, J. Friml, B. Scheres, E. Benková, Nature Protocols 1 (2006) 1939–1946.
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2006 | Journal Article | IST-REx-ID: 3152
In vivo migration A germ cell perspective
P. Kunwar, D.E. Siekhaus, R. Lehmann, Annual Review of Cell and Developmental Biology 22 (2006) 237–265.
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2006 | Conference Paper | IST-REx-ID: 3180
A comparative study of energy minimization methods for Markov random fields
R. Szeliski, R. Zabih, D. Scharstein, O. Veksler, V. Kolmogorov, A. Agarwala, M. Tappen, C. Rother, in:, Springer, 2006, pp. 16–29.
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2006 | Conference Paper | IST-REx-ID: 3184
Comparison of energy minimization algorithms for highly connected graphs
V. Kolmogorov, C. Rother, in:, Springer, 2006, pp. 1–15.
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2006 | Journal Article | IST-REx-ID: 3185
Probabilistic fusion of stereo with color and contrast for bilayer segmentation
V. Kolmogorov, A. Criminisi, A. Blake, G. Cross, C. Rother, IEEE Transactions on Pattern Analysis and Machine Intelligence 28 (2006) 1480–1492.
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2006 | Conference Paper | IST-REx-ID: 3186
An integral solution to surface evolution PDEs via geo cuts
Y. Boykov, V. Kolmogorov, D. Cremers, A. Delong, in:, Springer, 2006, pp. 409–422.
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2006 | Conference Paper | IST-REx-ID: 3188
Cosegmentation of image pairs by histogram matching - Incorporating a global constraint into MRFs
C. Rother, V. Kolmogorov, T. Minka, A. Blake, in:, IEEE, 2006, pp. 993–1000.
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2006 | Conference Paper | IST-REx-ID: 3189
Bilayer segmentation of live video
A. Criminisi, G. Cross, A. Blake, V. Kolmogorov, in:, IEEE, 2006, pp. 53–60.
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2006 | Journal Article | IST-REx-ID: 3190
Convergent tree reweighted message passing for energy minimization
V. Kolmogorov, IEEE Transactions on Pattern Analysis and Machine Intelligence 28 (2006) 1568–1583.
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2006 | Conference Paper | IST-REx-ID: 3214
Luby Rackoff ciphers from weak round functions
U. Maurer, Y. Oswald, K.Z. Pietrzak, J. Sjödin, in:, Springer, 2006, pp. 391–408.
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2006 | Conference Paper | IST-REx-ID: 3215
Separating sources for encryption and secret sharing
Y. Dodis, K.Z. Pietrzak, B. Przydatek, in:, Springer, 2006, pp. 601–616.
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2006 | Conference Paper | IST-REx-ID: 3216
A tight bound for EMAC
K.Z. Pietrzak, in:, Springer, 2006, pp. 168–179.
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2006 | Conference Paper | IST-REx-ID: 3217
Composition implies adaptive security in minicrypt
K.Z. Pietrzak, in:, Springer, 2006, pp. 328–338.
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2006 | Book Chapter | IST-REx-ID: 3404
Atomic force microscopy
H.L. Janovjak, R. Sawhney, M. Stark, D. Mueller, in:, Techniques in Microscopy for Biomedical Applications, World Scientific Publishing, 2006, pp. 213–284.
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2006 | Journal Article | IST-REx-ID: 3413
Bacteriorhodopsin folds into the membrane against an external force
M. Kessler, K. Gottschalk, H.L. Janovjak, D. Mueller, H. Gaub, Journal of Molecular Biology 357 (2006) 644–654.
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2006 | Journal Article | IST-REx-ID: 3414
Observing folding pathways and kinetics of a single sodium-proton antiporter from Escherichia coli
A. Kedrov, H.L. Janovjak, C. Ziegler, W. Kühlbrandt, D. Mueller, Journal of Molecular Biology 355 (2006) 2–8.
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2006 | Book Review | IST-REx-ID: 3415
Imaging and detecting molecular interactions of single membrane proteins
H.L. Janovjak, A. Kedrov, D. Cisneros, T. Sapra, J. Struckmeier, D. Mueller, Neurobiology of Aging 27 (2006) 546–561.
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2006 | Preprint | IST-REx-ID: 3431 | OA
Ising models for networks of real neurons
G. Tkacik, E. Schneidman, M. Berry, W. Bialek, ArXiv (2006) 1–4.
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2006 | Journal Article | IST-REx-ID: 3437
Fitness effects of beneficial mutations: the mutational landscape model in experimental evolution
A. Betancourt, J.P. Bollback, Current Opinion in Genetics & Development 16 (2006) 618–623.
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2006 | Conference Paper | IST-REx-ID: 3449
Games for controls
K. Chatterjee, R. Jagadeesan, C. Pitcher, in:, IEEE, 2006, pp. 70–82.
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2006 | Book Review | IST-REx-ID: 3463
Timing and efficacy of transmitter release at mossy fiber synapses in the hippocampal network. (Review)
J. Bischofberger, D. Engel, M. Frotscher, P.M. Jonas, Pflugers Archiv : European Journal of Physiology 453 (2006) 361–372.
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2006 | Conference Paper | IST-REx-ID: 3499
Nash equilibrium for upward-closed objectives
K. Chatterjee, in:, Springer, 2006, pp. 271–286.
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2006 | Conference Paper | IST-REx-ID: 3500
Algorithms for Büchi Games
K. Chatterjee, T.A. Henzinger, N. Piterman, in:, ACM, 2006.
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2006 | Patent | IST-REx-ID: 3510 View | DOI | Download (ext.)
 

2006 | Patent | IST-REx-ID: 3511 View | DOI | Download (ext.)
 

2006 | Patent | IST-REx-ID: 3512
Method, apparatus and computer products that reconstruct surfaces from data points
Y. Fletcher, T. Gloth, H. Edelsbrunner, P. Fu, (2006).
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2006 | Journal Article | IST-REx-ID: 3522 View | DOI
 

2006 | Journal Article | IST-REx-ID: 3545
Changes in functional connectivity within the rat striatopallidal axis during global brain activation in vivo
P. Magill, A. Pogosyan, A. Sharott, J.L. Csicsvari, J. Bolam, P. Brown, Journal of Neuroscience 26 (2006) 6318–6329.
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2006 | Conference Paper | IST-REx-ID: 3559
Vines and vineyards by updating persistence in linear time
D. Cohen Steiner, H. Edelsbrunner, D. Morozov, in:, ACM, 2006, pp. 119–126.
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2006 | Conference Paper | IST-REx-ID: 3560
Persistence-sensitive simplification of functions on 2-manifolds
H. Edelsbrunner, D. Morozov, V. Pascucci, in:, ACM, 2006, pp. 127–134.
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2006 | Book Review | IST-REx-ID: 3594
Hybridisation between red and sika deer in Scotland
J. Pemberton, G. Swanson, N.H. Barton, S. Livingstone, H. Senn, Deer 13 (2006) 22–26.
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2006 | Journal Article | IST-REx-ID: 3607
Will population bottlenecks and multilocus epistasis increase additive genetic variance?
M. Turelli, N.H. Barton, Evolution; International Journal of Organic Evolution 60 (2006) 1763–1776.
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2006 | Journal Article | IST-REx-ID: 3608
Chromosome inversions, local adaptation, and speciation
M. Kirkpatrick, N.H. Barton, Genetics 173 (2006) 419–434.
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2006 | Journal Article | IST-REx-ID: 3609
Hybridization of Bombina bombina and B. variegata (Anura, Discoglossidae) at a sharp ecotone in western Ukraine: comparisons across transects and over time
A. Yanchukov, S. Hofman, J. Szymura, S. Mezhzherin, S. Morozov Leonov, N.H. Barton, B. Nürnberger, Evolution; International Journal of Organic Evolution 60 (2006) 583–600.
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2006 | Journal Article | IST-REx-ID: 3610
Prediction of effects of genetic drift on variance components under a general model of epistasis
W. Hill, N.H. Barton, M. Turelli, Theoretical Population Biology 70 (2006) 56–62.
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2006 | Conference Paper | IST-REx-ID: 3677
Spatiogram-based shot distances for video retrieval
A. Ulges, C. Lampert, D. Keysers, in:, NIST (National Institute of Standards and Technology, US Department of Commerce), 2006, pp. 1–10.
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2006 | Conference Paper | IST-REx-ID: 3679
Satellite tracks removal in astronomical images
H. Ali, C. Lampert, T. Breuel, in:, Springer, 2006, pp. 892–901.
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2006 | Conference Paper | IST-REx-ID: 3680
Printing technique classification for document counterfeit detection
C. Lampert, L. Mei, T. Breuel, in:, IEEE, 2006, pp. 639–634.
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2006 | Conference Paper | IST-REx-ID: 3683 View | Download (ext.)
 

2006 | Conference Paper | IST-REx-ID: 3685
Machine learning for video compression: Macroblock mode decision
C. Lampert, in:, IEEE, 2006, pp. 936–940.
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2006 | Conference Paper | IST-REx-ID: 3692
Color image dequantization by constrained diffusion
D. Keysers, C. Lampert, T. Breuel, in:, SPIE, 2006.
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2006 | Conference Paper | IST-REx-ID: 3693
Anisotropic Gaussian filtering using fixed point arithmetic
C. Lampert, O. Wirjadi, in:, IEEE, 2006, pp. 1565–1568.
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2006 | Journal Article | IST-REx-ID: 3695 | OA
An optimal non-orthogonal separation of the anisotropic Gaussian convolution filter
C. Lampert, O. Wirjadi, IEEE Transactions on Image Processing (TIP) 15 (2006) 3501–3513.
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2006 | Book Chapter | IST-REx-ID: 3722
Rastersondenmikroskopie
H.L. Janovjak, D. Mueller, in:, Bioanalytik, Spektrum Akademischer Verlag, 2006.
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2006 | Journal Article | IST-REx-ID: 3728
Pulling single bacteriorhodopsin out of a membrane: Comparison of simulation and experiment
M. Cieplak, S. Filipek, H.L. Janovjak, K. Krzysko, Biochimica et Biophysica Acta (BBA) - Biomembranes 1758 (2006) 537–544.
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2006 | Journal Article | IST-REx-ID: 3729
Direct measurement of single-molecule visco-elasticity in atomic force microscope force-extension experiments
C. Bippes, A. Humphris, M. Stark, D. Mueller, H.L. Janovjak, European Biophysics Journal 35 (2006) 287–292.
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2006 | Journal Article | IST-REx-ID: 3750
Protein expression enhancement in efflux-deleted mutant bacteria
T. Le, C.C. Guet, P. Cluzel, Protein Expression and Purification 48 (2006) 28–31.
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2006 | Journal Article | IST-REx-ID: 3755 | OA
Dynamical determinants of drug-inducible gene expression in a single bacterium
T. Le, T. Emonet, S. Harlepp, C.C. Guet, P. Cluzel, Biophysical Journal 90 (2006) 3315–3321.
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2006 | Conference Paper | IST-REx-ID: 3758
Keyframe control of complex particle systems using the adjoint method
C. Wojtan, P. Mucha, G. Turk, in:, ACM, 2006, pp. 15–23.
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2006 | Journal Article | IST-REx-ID: 3767
Determinants of simulated RNA evolution.
A. Kupczok, P. Dittrich, Journal of Theoretical Biology 238 (2006) 726–35.
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2006 | Journal Article | IST-REx-ID: 3811 View | DOI
 

2006 | Journal Article | IST-REx-ID: 3813 | OA
Hyperpolarization-activated cation channels in fast-spiking interneurons of rat hippocampus
Y. Aponte, C. Lien, E. Reisinger, P.M. Jonas, Journal of Physiology 574 (2006) 229–43.
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2006 | Book Review | IST-REx-ID: 3814
Synapses formed by normal and abnormal hippocampal mossy fibers (Review)
M. Frotscher, P.M. Jonas, R. Sloviter, Cell and Tissue Research 326 (2006) 361–7.
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2006 | Journal Article | IST-REx-ID: 3815
Timing and efficacy of transmitter release at mossy fiber synapses in the hippocampal network
J. Bischofberger, D. Engel, M. Frotscher, P.M. Jonas, Pflugers Archiv : European Journal of Physiology 453 (2006) 361–72.
View | DOI
 

2006 | Journal Article | IST-REx-ID: 3817
The most important recent advances in synapse research from my point of view--and what remains to be done
M. Frotscher, E. Gundelfinger, P.M. Jonas, E. Neher, P. Seeburg, Cell and Tissue Research 326 (2006) 203–4.
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2006 | Journal Article | IST-REx-ID: 3818
Patch-clamp recording from mossy fiber terminals in hippocampal slices
J. Bischofberger, D. Engel, L. Li, J. Geiger, P.M. Jonas, Nature Protocols 1 (2006) 2075–81.
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2006 | Conference Paper | IST-REx-ID: 3888
Strategy improvement for stochastic Rabin and Streett games
K. Chatterjee, T.A. Henzinger, in:, Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2006, pp. 375–389.
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2006 | Conference Paper | IST-REx-ID: 3889
Algorithms for omega-regular games with imperfect information
K. Chatterjee, L. Doyen, T.A. Henzinger, J. Raskin, in:, Springer, 2006, pp. 287–302.
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2006 | Conference Paper | IST-REx-ID: 3890
The complexity of quantitative concurrent parity games
K. Chatterjee, L. De Alfaro, T.A. Henzinger, in:, SIAM, 2006, pp. 678–687.
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2006 | Conference Paper | IST-REx-ID: 3891
Concurrent games with tail objectives
K. Chatterjee, in:, Springer, 2006, pp. 256–270.
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2006 | Journal Article | IST-REx-ID: 3908
Long repeats in a huge gemome: microsatellite loci in the grasshopper Chorthippus biguttulus
J. Ustinova, R. Achmann, S. Cremer, F. Mayer, Journal of Molecular Evolution 62 (2006) 158–167.
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2006 | Journal Article | IST-REx-ID: 3912
Attack of the invasive garden ant: aggression behaviour of Lasius neglectus (Hymenoptera: Formicidae) against native Lasius species in Spain
S. Cremer, L.V. Ugelvig, S. Lommen, K. Petersen, J. Pedersen, Myrmecological News 9 (2006) 13–19.
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2006 | Journal Article | IST-REx-ID: 3913
Stealthy invaders: the biology of Cardiocondyla tramp ants
J. Heinze, S. Cremer, N. Eckl, A. Schrempf, Insectes Sociaux 53 (2006) 1–7.
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2006 | Journal Article | IST-REx-ID: 3914
Optimal species distinction by discriminant analysis: comparing established methods of character selection with a combination procedure using ant morphometrics as a case study
K. Moder, B. Schlick Steiner, F. Steiner, S. Cremer, E. Christian, B. Seifert, Journal of Zoological Systematics and Evolutionary Research 45 (2006) 82–87.
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2006 | Journal Article | IST-REx-ID: 3932 View | DOI
 

2006 | Journal Article | IST-REx-ID: 3934
Characterization of a conduit system containing laminin-5 in the human thymus: a potential transport system for small molecules
M. Drumea Mirancea, J. Wessels, C. Müller, M. Essl, J. Eble, E. Tolosa, M. Koch, D. Reinhardt, M.K. Sixt, L. Sorokin, Y. Stierhof, H. Schwarz, G. Klein, Journal of Cell Science 119 (2006) 1396–1405.
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2006 | Journal Article | IST-REx-ID: 3935
γ-Parvin is dispensable for hematopoiesis, leukocyte trafficking, and T-cell-dependent antibody response
H. Chu, I. Thievessen, M.K. Sixt, T. Lämmermann, A. Waisman, A. Braun, A. Noegel, R. Fässler, Molecular and Cellular Biology 26 (2006) 1817–1825.
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2006 | Journal Article | IST-REx-ID: 3936
β1 integrins: zip codes and signaling relay for blood cells
M.K. Sixt, M. Bauer, T. Lämmermann, R. Fässler, Current Opinion in Cell Biology 18 (2006) 482–490.
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2006 | Journal Article | IST-REx-ID: 3978
Evaluating the quality of NMR structures by local density of protons
Y. Ban, J. Rudolph, P. Zhou, H. Edelsbrunner, Proteins: Structure, Function and Bioinformatics 62 (2006) 852–864.
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2006 | Journal Article | IST-REx-ID: 3979
Interface surfaces for protein-protein complexes
Y. Ban, H. Edelsbrunner, J. Rudolph, Journal of the ACM 53 (2006) 361–378.
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2006 | Journal Article | IST-REx-ID: 3980
Extreme elevation on a 2-manifold
P. Agarwal, H. Edelsbrunner, J. Harer, Y. Wang, Discrete & Computational Geometry 36 (2006) 553–572.
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2006 | Journal Article | IST-REx-ID: 4140
Wnt11 controls cell contact persistence by local accumulation of Frizzled 7 at the plasma membrane
S. Witzel, V. Zimyanin, F. Carreira Barbosa, M. Tada, C. Heisenberg, Journal of Cell Biology 175 (2006) 791–802.
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2006 | Journal Article | IST-REx-ID: 4145
Single-cell detection of microRNAs in developing vertebrate embryos after acute administration of a dual-fluorescence reporter/sensor plasmid
D. Tonelli, F. Calegari, J. Fei, T. Nomura, N. Osumi, C. Heisenberg, W. Huttner, Biotechniques 41 (2006) 727–732.
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2006 | Conference Paper | IST-REx-ID: 7326
What is learned beyond the scale of single cells?
F.N. Büchi, S.A. Freunberger, M. Santis, in:, ECS Transactions, ECS, 2006, pp. 963–968.
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2006 | Journal Article | IST-REx-ID: 7327
Experimental investigation of coupling phenomena in polymer electrolyte fuel cell stacks
M. Santis, S.A. Freunberger, M. Papra, A. Wokaun, F.N. Büchi, Journal of Power Sources 161 (2006) 1076–1083.
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2006 | Journal Article | IST-REx-ID: 7328
Measuring the current distribution in PEFCs with sub-millimeter resolution
S.A. Freunberger, M. Reum, J. Evertz, A. Wokaun, F.N. Büchi, Journal of The Electrochemical Society 153 (2006) A2158.
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2006 | Journal Article | IST-REx-ID: 7329
Expanding current distribution measurement in PEFCs to sub-millimeter resolution
S.A. Freunberger, M. Reum, A. Wokaun, F.N. Büchi, Electrochemistry Communications 8 (2006) 1435–1438.
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2006 | Journal Article | IST-REx-ID: 7330
Homogenization of the current density in polymer electrolyte fuel cells by in-plane cathode catalyst gradients
M. Santis, S.A. Freunberger, A. Reiner, F.N. Büchi, Electrochimica Acta 51 (2006) 5383–5393.
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2006 | Journal Article | IST-REx-ID: 7331
In-plane effects in large-scale PEFCs: II. The influence of cooling strategy on cell performance
S.A. Freunberger, A. Wokaun, F.N. Büchi, Journal of The Electrochemical Society 153 (2006) A909.
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2006 | Journal Article | IST-REx-ID: 7332
In-plane effects in large-scale PEMFCs
S.A. Freunberger, M. Santis, I.A. Schneider, A. Wokaun, F.N. Büchi, Journal of The Electrochemical Society 153 (2006) A396.
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2006 | Journal Article | IST-REx-ID: 854
Complete mitochondrial genome and phylogeny of pleistocene mammoth Mammuthus primigenius
E. Rogaev, Y. Moliaka, B. Malyarchuk, F. Kondrashov, M. Derenko, I. Chumakov, A. Grigorenko, PLoS Biology 4 (2006) 0403–0410.
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2006 | Journal Article | IST-REx-ID: 868
Evolution of glyoxylate cycle enzymes in Metazoa Evidence of multiple horizontal transfer events and pseudogene formation
F. Kondrashov, E. Koonin, I. Morgunov, T. Finogenova, M. Kondrashova, Biology Direct 1 (2006).
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2006 | Journal Article | IST-REx-ID: 869
Selection in favor of nucleotides G and C diversifies evolution rates and levels of polymorphism at mammalian synonymous sites
F. Kondrashov, A. Ogurtsov, A. Kondrashov, Journal of Theoretical Biology 240 (2006) 616–626.
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2006 | Journal Article | IST-REx-ID: 873
Role of selection in fixation of gene duplications
F. Kondrashov, A. Kondrashov, Journal of Theoretical Biology 239 (2006) 141–151.
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2006 | Journal Article | IST-REx-ID: 903
Signs of positive selection of somatic mutations in human cancers detected by EST sequence analysis
V. Babenko, M. Basu, F. Kondrashov, I. Rogozin, E. Koonin, BMC Cancer 6 (2006).
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2006 | Journal Article | IST-REx-ID: 1033 | OA
Evidence for Efimov quantum states in an ultracold gas of caesium atoms
T. Kraemer, M. Mark, P. Waldburger, J. Danzl, C. Chin, B. Engeser, A. Lange, K. Pilch, A. Jaakkola, H. Nägerl, R. Grimm, Nature 440 (2006) 315–318.
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2006 | Conference Paper | IST-REx-ID: 1034 | OA
Experimental evidence for Efimov quantum states
H. Nägerl, T. Kraemer, M. Mark, P. Waldburger, J. Danzl, B. Engeser, A. Lange, K. Pilch, A. Jaakkola, C. Chin, R. Grimm, in:, AIP, 2006, pp. 269–277.
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2006 | Journal Article | IST-REx-ID: 1461 | OA
Intersection forms of toric hyperkähler varieties
T. Hausel, E. Swartz, Proceedings of the American Mathematical Society 134 (2006) 2403–2409.
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2006 | Journal Article | IST-REx-ID: 1462 | OA View | DOI | Download (ext.)
 

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