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197 Publications


2006 | Conference Paper | IST-REx-ID: 4552
Chatterjee K, De Alfaro L, Henzinger TA. 2006. Strategy improvement for concurrent reachability games. QEST: Quantitative Evaluation of Systems, 291–300.
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2006 | Conference Paper | IST-REx-ID: 4574
Beyer D, Henzinger TA, Théoduloz G. 2006. Lazy shape analysis. CAV: Computer Aided Verification, LNCS, vol. 4144, 532–546.
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2006 | Book Chapter | IST-REx-ID: 3722
Janovjak HL, Mueller D. 2006.Rastersondenmikroskopie. In: Bioanalytik. .
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2006 | Journal Article | IST-REx-ID: 3728
Cieplak M, Filipek S, Janovjak HL, Krzysko K. 2006. Pulling single bacteriorhodopsin out of a membrane: Comparison of simulation and experiment. Biochimica et Biophysica Acta (BBA) - Biomembranes. 1758(4), 537–544.
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2006 | Journal Article | IST-REx-ID: 3729
Bippes C, Humphris A, Stark M, Mueller D, Janovjak HL. 2006. Direct measurement of single-molecule visco-elasticity in atomic force microscope force-extension experiments. European Biophysics Journal. 35(3), 287–292.
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2006 | Journal Article | IST-REx-ID: 3750
Le T, Guet CC, Cluzel P. 2006. Protein expression enhancement in efflux-deleted mutant bacteria. Protein Expression and Purification. 48(1), 28–31.
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2006 | Journal Article | IST-REx-ID: 3755 | OA
Le T, Emonet T, Harlepp S, Guet CC, Cluzel P. 2006. Dynamical determinants of drug-inducible gene expression in a single bacterium. Biophysical Journal. 90(9), 3315–3321.
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2006 | Conference Paper | IST-REx-ID: 3758
Wojtan CJ, Mucha P, Turk G. 2006. Keyframe control of complex particle systems using the adjoint method. SCA: ACM SIGGRAPH/Eurographics Symposium on Computer animation, 15–23.
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2006 | Journal Article | IST-REx-ID: 3767
Kupczok A, Dittrich P. 2006. Determinants of simulated RNA evolution. Journal of Theoretical Biology. 238(3), 726–35.
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2006 | Journal Article | IST-REx-ID: 3607
Turelli M, Barton NH. 2006. Will population bottlenecks and multilocus epistasis increase additive genetic variance? Evolution; International Journal of Organic Evolution. 60(9), 1763–1776.
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2006 | Journal Article | IST-REx-ID: 3608
Kirkpatrick M, Barton NH. 2006. Chromosome inversions, local adaptation, and speciation. Genetics. 173(1), 419–434.
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2006 | Journal Article | IST-REx-ID: 3609
Yanchukov A, Hofman S, Szymura J, Mezhzherin S, Morozov Leonov S, Barton NH, Nürnberger B. 2006. Hybridization of Bombina bombina and B. variegata (Anura, Discoglossidae) at a sharp ecotone in western Ukraine: comparisons across transects and over time. Evolution; International Journal of Organic Evolution. 60(3), 583–600.
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2006 | Journal Article | IST-REx-ID: 3610
Hill W, Barton NH, Turelli M. 2006. Prediction of effects of genetic drift on variance components under a general model of epistasis. Theoretical Population Biology. 70(1), 56–62.
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2006 | Conference Paper | IST-REx-ID: 3677
Ulges A, Lampert C, Keysers D. 2006. Spatiogram-based shot distances for video retrieval. TRECVID Workshop, TRECVID Notebook Papers and Slides, , 1–10.
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2006 | Conference Paper | IST-REx-ID: 3679
Ali H, Lampert C, Breuel T. 2006. Satellite tracks removal in astronomical images. CIARP: Iberoamerican Congress in Pattern Recognition, LNCS, vol. 4225, 892–901.
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2006 | Conference Paper | IST-REx-ID: 3680
Lampert C, Mei L, Breuel T. 2006. Printing technique classification for document counterfeit detection. CIS: Computational Intelligence and Security vol. 1, 639–634.
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2006 | Conference Paper | IST-REx-ID: 3683
Lampert C, Breuel T. 2006. Objective quality measurement for geometric document image restoration. DAS: Document Analysis Systems.
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2006 | Journal Article | IST-REx-ID: 3811
Vida I, Bartos M, Jonas PM. 2006. Shunting inhibition improves robustness of gamma oscillations in hippocampal interneuron networks by homogenizing firing rates. Neuron. 49(1), 107–17.
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2006 | Journal Article | IST-REx-ID: 3813 | OA
Aponte Y, Lien C, Reisinger E, Jonas PM. 2006. Hyperpolarization-activated cation channels in fast-spiking interneurons of rat hippocampus. Journal of Physiology. 574(Pt 1), 229–43.
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2006 | Book Review | IST-REx-ID: 3814
Frotscher M, Jonas PM, Sloviter R. 2006. Synapses formed by normal and abnormal hippocampal mossy fibers (Review). Cell and Tissue Research. 326(2), 361–7.
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2006 | Journal Article | IST-REx-ID: 3815
Bischofberger J, Engel D, Frotscher M, Jonas PM. 2006. Timing and efficacy of transmitter release at mossy fiber synapses in the hippocampal network. Pflugers Archiv : European Journal of Physiology. 453(3), 361–72.
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2006 | Journal Article | IST-REx-ID: 3817
Frotscher M, Gundelfinger E, Jonas PM, Neher E, Seeburg P. 2006. The most important recent advances in synapse research from my point of view--and what remains to be done. Cell and Tissue Research. 326(2), 203–4.
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2006 | Journal Article | IST-REx-ID: 3818
Bischofberger J, Engel D, Li L, Geiger J, Jonas PM. 2006. Patch-clamp recording from mossy fiber terminals in hippocampal slices. Nature Protocols. 1(4), 2075–81.
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2006 | Conference Paper | IST-REx-ID: 3692
Keysers D, Lampert C, Breuel T. 2006. Color image dequantization by constrained diffusion. SPIE Electronic Imaging vol. 6058.
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2006 | Conference Paper | IST-REx-ID: 3693
Lampert C, Wirjadi O. 2006. Anisotropic Gaussian filtering using fixed point arithmetic. ICIP: IEEE International Conference on Image Processing, 1565–1568.
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2006 | Journal Article | IST-REx-ID: 3695 | OA
Lampert C, Wirjadi O. 2006. An optimal non-orthogonal separation of the anisotropic Gaussian convolution filter. IEEE Transactions on Image Processing (TIP). 15(11), 3501–3513.
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2006 | Conference Paper | IST-REx-ID: 3685
Lampert C. 2006. Machine learning for video compression: Macroblock mode decision. ICPR: International Conference on Pattern Recognition, 936–940.
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2006 | Conference Paper | IST-REx-ID: 3888
Chatterjee K, Henzinger TA. 2006. Strategy improvement for stochastic Rabin and Streett games. CONCUR: Concurrency Theory, LNCS, vol. 4137, 375–389.
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2006 | Conference Paper | IST-REx-ID: 3889
Chatterjee K, Doyen L, Henzinger TA, Raskin J. 2006. Algorithms for omega-regular games with imperfect information. CSL: Computer Science Logic, LNCS, vol. 4207, 287–302.
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2006 | Conference Paper | IST-REx-ID: 3890
Chatterjee K, De Alfaro L, Henzinger TA. 2006. The complexity of quantitative concurrent parity games. SODA: Symposium on Discrete Algorithms, 678–687.
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2006 | Conference Paper | IST-REx-ID: 3891
Chatterjee K. 2006. Concurrent games with tail objectives. CSL: Computer Science Logic, LNCS , vol. 4207, 256–270.
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2006 | Journal Article | IST-REx-ID: 3908
Ustinova J, Achmann R, Cremer S, Mayer F. 2006. Long repeats in a huge gemome: microsatellite loci in the grasshopper Chorthippus biguttulus. Journal of Molecular Evolution. 62(2), 158–167.
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2006 | Journal Article | IST-REx-ID: 3912
Cremer S, Ugelvig LV, Lommen S, Petersen K, Pedersen J. 2006. Attack of the invasive garden ant: aggression behaviour of Lasius neglectus (Hymenoptera: Formicidae) against native Lasius species in Spain. Myrmecological News. 9, 13–19.
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2006 | Journal Article | IST-REx-ID: 3913
Heinze J, Cremer S, Eckl N, Schrempf A. 2006. Stealthy invaders: the biology of Cardiocondyla tramp ants. Insectes Sociaux. 53(1), 1–7.
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2006 | Journal Article | IST-REx-ID: 3914
Moder K, Schlick Steiner B, Steiner F, Cremer S, Christian E, Seifert B. 2006. Optimal species distinction by discriminant analysis: comparing established methods of character selection with a combination procedure using ant morphometrics as a case study. Journal of Zoological Systematics and Evolutionary Research. 45(1), 82–87.
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2006 | Journal Article | IST-REx-ID: 3932
Henic E, Sixt MK, Hansson S, Høyer Hansen G, Casslén B. 2006. EGF-stimulated migration in ovarian cancer cells is associated with decreased internalization, increased surface expression, and increased shedding of the urokinase plasminogen activator receptor. Gynecologic Oncology. 101(1), 28–39.
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2006 | Journal Article | IST-REx-ID: 3934
Drumea Mirancea M, Wessels J, Müller C, Essl M, Eble J, Tolosa E, Koch M, Reinhardt D, Sixt MK, Sorokin L, Stierhof Y, Schwarz H, Klein G. 2006. Characterization of a conduit system containing laminin-5 in the human thymus: a potential transport system for small molecules. Journal of Cell Science. 119(Pt 7), 1396–1405.
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2006 | Journal Article | IST-REx-ID: 3935
Chu H, Thievessen I, Sixt MK, Lämmermann T, Waisman A, Braun A, Noegel A, Fässler R. 2006. γ-Parvin is dispensable for hematopoiesis, leukocyte trafficking, and T-cell-dependent antibody response. Molecular and Cellular Biology. 26(5), 1817–1825.
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2006 | Journal Article | IST-REx-ID: 3936
Sixt MK, Bauer M, Lämmermann T, Fässler R. 2006. β1 integrins: zip codes and signaling relay for blood cells. Current Opinion in Cell Biology. 18(5), 482–490.
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2006 | Journal Article | IST-REx-ID: 3978
Ban Y, Rudolph J, Zhou P, Edelsbrunner H. 2006. Evaluating the quality of NMR structures by local density of protons. Proteins: Structure, Function and Bioinformatics. 62(4), 852–864.
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2006 | Journal Article | IST-REx-ID: 3979
Ban Y, Edelsbrunner H, Rudolph J. 2006. Interface surfaces for protein-protein complexes. Journal of the ACM. 53(3), 361–378.
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2006 | Journal Article | IST-REx-ID: 3980
Agarwal P, Edelsbrunner H, Harer J, Wang Y. 2006. Extreme elevation on a 2-manifold. Discrete & Computational Geometry. 36(4), 553–572.
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2006 | Journal Article | IST-REx-ID: 4140
Witzel S, Zimyanin V, Carreira Barbosa F, Tada M, Heisenberg C-PJ. 2006. Wnt11 controls cell contact persistence by local accumulation of Frizzled 7 at the plasma membrane. Journal of Cell Biology. 175(5), 791–802.
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2006 | Journal Article | IST-REx-ID: 4145
Tonelli D, Calegari F, Fei J, Nomura T, Osumi N, Heisenberg C-PJ, Huttner W. 2006. Single-cell detection of microRNAs in developing vertebrate embryos after acute administration of a dual-fluorescence reporter/sensor plasmid. Biotechniques. 41(6), 727–732.
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2006 | Journal Article | IST-REx-ID: 4173 | OA
Link V, Shevchenko A, Heisenberg C-PJ. 2006. Proteomics of early zebrafish embryos. BMC Developmental Biology. 6, 1–9.
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2006 | Journal Article | IST-REx-ID: 4176
Link V, Carvalho L, Castanon I, Stockinger P, Shevchenko A, Heisenberg C-PJ. 2006. Identification of regulators of germ layer morphogenesis using proteomics in zebrafish. Journal of Cell Science. 119(10), 2073–2083.
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2006 | Journal Article | IST-REx-ID: 4178
Langenberg T, Dracz T, Oates A, Heisenberg C-PJ, Brand M. 2006. Analysis and visualization of cell movement in the developing zebrafish brain. Developmental Dynamics. 235(4), 928–933.
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2006 | Journal Article | IST-REx-ID: 4184
Köppen M, Fernández B, Carvalho L, Jacinto A, Heisenberg C-PJ. 2006. Coordinated cell-shape changes control epithelial movement in zebrafish and Drosophila. Development. 133(14), 2671–2681.
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2006 | Journal Article | IST-REx-ID: 4218
Blaser H, Reichman Fried M, Castanon I, Dumstrei K, Marlow F, Kawakami K, Solnica Krezel L, Heisenberg C-PJ, Raz E. 2006. Migration of zebrafish primordial germ cells: A role for myosin contraction and cytoplasmic flow. Developmental Cell. 11(5), 613–627.
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2006 | Journal Article | IST-REx-ID: 4235
de Vladar H, González J. 2006. Dynamic response of cancer under the influence of immunological activity and therapy. Journal of Theoretical Biology., 91–109.
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2006 | Journal Article | IST-REx-ID: 4237
de Vladar H. 2006. Density-dependence as a size-independent regulatory mechanism. Journal of Theoretical Biology. 238(2), 245–256.
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2006 | Book Review | IST-REx-ID: 4250
Barton NH. 2006. Evolutionary Biology: How did the human species form? Current Biology. 16(16), 647–650.
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2006 | Journal Article | IST-REx-ID: 4345
Danowski P, Heller L. 2006. Bibliothek 2.0 - Die Bibliothek der Zukunft? Bibliotheksdienst. 40(11), 1250–1271.
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2006 | Journal Article | IST-REx-ID: 4351
Bollback JP. 2006. SIMMAP: stochastic character mapping of discrete traits on phylogenies. BMC Bioinformatics. 7.
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2006 | Journal Article | IST-REx-ID: 4352
Conn J, Vineis J, Bollback JP, Onyabe D, Wilkerson R, Povoa M. 2006. Population structure of the malaria vector Anopheles darlingi in a malaria-endemic region of eastern Amazonian Brazil. The American Journal of Tropical Medicine and Hygiene. 74(5), 798–806.
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2006 | Conference Paper | IST-REx-ID: 4359
Wies T, Kuncak V, Lam P, Podelski A, Rinard M. 2006. Field Constraint Analysis. VMCAI: Verification, Model Checking and Abstract Interpretation, LNCS 3855, , 157–173.
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2006 | Conference Paper | IST-REx-ID: 4373
Maler O, Nickovic D, Pnueli A. 2006. Real Time Temporal Logic: Past, Present, Future. FORMATS: Formal Modeling and Analysis of Timed Systems, LNCS, , 2–16.
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2006 | Conference Paper | IST-REx-ID: 4374
Maler O, Nickovic D, Pnueli A. 2006. From MITL to Timed Automata. FORMATS: Formal Modeling and Analysis of Timed Systems, LNCS, , 274–289.
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2006 | Journal Article | IST-REx-ID: 4248
Roze D, Barton NH. 2006. The Hill-Robertson effect and the evolution of recombination. Genetics. 173(3), 1793–1811.
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2006 | Conference Paper | IST-REx-ID: 4401
Alur R, Cerny P, Zdancewic S. 2006. Preserving Secrecy Under Refinement. ICALP: Automata, Languages and Programming, LNCS, , 107–118.
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2006 | Conference Paper | IST-REx-ID: 4406
De Wulf M, Doyen L, Henzinger TA, Raskin J. 2006. Antichains: A new algorithm for checking universality of finite automata. CAV: Computer Aided Verification, LNCS, vol. 4144, 17–30.
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2006 | Conference Paper | IST-REx-ID: 4431
Henzinger TA, Sifakis J. 2006. The embedded systems design challenge. FM: Formal Methods, LNCS, vol. 4085, 1–15.
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2006 | Conference Paper | IST-REx-ID: 4432
Henzinger TA, Prabhu V. 2006. Timed alternating-time temporal logic. FORMATS: Formal Modeling and Analysis of Timed Systems, LNCS, vol. 4202, 1–17.
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2006 | Conference Paper | IST-REx-ID: 4436
Henzinger TA, Matic S. 2006. An interface algebra for real-time components. RTAS: Real-time and Embedded Technology and Applications Symposium, 253–266.
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2006 | Conference Paper | IST-REx-ID: 4437
Henzinger TA, Piterman N. 2006. Solving games without determinization. CSL: Computer Science Logic, LNCS, vol. 4207, 395–410.
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2006 | Journal Article | IST-REx-ID: 4451
Henzinger TA, Kupferman O, Majumdar R. 2006. On the universal and existential fragments of the mu-calculus. Theoretical Computer Science. 354(2), 173–186.
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2006 | Conference Paper | IST-REx-ID: 4523
Gulavani B, Henzinger TA, Kannan Y, Nori A, Rajamani S. 2006. Synergy: A new algorithm for property checking. FSE: Foundations of Software Engineering, 117–127.
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2006 | Conference Paper | IST-REx-ID: 4526
Ghosal A, Henzinger TA, Iercan D, Kirsch C, Sangiovanni Vincentelli A. 2006. A hierarchical coordination language for interacting real-time tasks. EMSOFT: Embedded Software , 132–141.
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2006 | Conference Paper | IST-REx-ID: 4528
Fisher J, Henzinger TA. 2006. Executable biology. WSC: Winter Simulation Conference, 1675–1682.
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2006 | Conference Paper | IST-REx-ID: 4538
Chatterjee K, Henzinger TA. 2006. Strategy improvement and randomized subexponential algorithms for stochastic parity games. STACS: Theoretical Aspects of Computer Science, LNCS, vol. 3884, 512–523.
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2006 | Conference Paper | IST-REx-ID: 4539
Chatterjee K, Henzinger TA. 2006. Finitary winning in omega-regular games. TACAS: Tools and Algorithms for the Construction and Analysis of Systems, LNCS, vol. 3920, 257–271.
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2006 | Preprint | IST-REx-ID: 573 | OA
Hosten O, Rakher M, Barreiro J, Peters N, Kwiat P. 2006. Counterfactual computation revisited.
View | Download Preprint (ext.) | arXiv
 

2006 | Preprint | IST-REx-ID: 574 | OA
Hosten O, Kwiat P. 2006. Weak measurements and counterfactual computation.
View | Download Preprint (ext.) | arXiv
 

2006 | Conference Paper | IST-REx-ID: 577
Rangarajan R, Altepeter J, Jeffrey E, Stoutimore M, Peters N, Hosten O, Kwiat P. 2006. High-efficiency single-photon detectors. Unknown (978-081946470-5), Proceedings of SPIE, vol. 6372.
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2006 | Conference Paper | IST-REx-ID: 578
Peters N, Arnold K, Vandevender A, Jeffrey E, Rangarajan R, Hosten O, Barreiro J, Altepeter J, Kwiat P. 2006. Towards a quasi-deterministic single-photon source. Quantum Communications and Quantum Imaging, Proc. SPIE, vol. 6305.
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2006 | Journal Article | IST-REx-ID: 579
Hosten O, Rakher M, Barreiro J, Peters N, Kwiat P. 2006. Counterfactual quantum computation through quantum interrogation. Nature. 439(7079), 949–952.
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2006 | Conference Paper | IST-REx-ID: 583
Rangarajan R, Peters N, Hosten O, Altepeter J, Jeffrey E, Kwiat P. 2006. Improved single-photon detection. CLEO/QELS: Conference on Lasers and Electro-Optics / Quantum Electronics and Laser Science Conference.
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2006 | Journal Article | IST-REx-ID: 6151 | OA
Salecker I, Häusser M, de Bono M. 2006. On the axonal road to circuit function and behaviour: Workshop on the assembly and function of neuronal circuits. EMBO reports. 7(6), 585–589.
View | DOI | Download Published Version (ext.) | PubMed | Europe PMC
 

2006 | Journal Article | IST-REx-ID: 6152
Rogers C, Persson A, Cheung B, de Bono M. 2006. Behavioral motifs and neural pathways coordinating O2 responses and aggregation in C. elegans. Current Biology. 16(7), 649–659.
View | DOI | PubMed | Europe PMC
 

2006 | Conference Paper | IST-REx-ID: 7326
Büchi FN, Freunberger SA, Santis M. 2006. What is learned beyond the scale of single cells? ECS Transactions. ECS Meeting vol. 3, 963–968.
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2006 | Journal Article | IST-REx-ID: 7327
Santis M, Freunberger SA, Papra M, Wokaun A, Büchi FN. 2006. Experimental investigation of coupling phenomena in polymer electrolyte fuel cell stacks. Journal of Power Sources. 161(2), 1076–1083.
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2006 | Journal Article | IST-REx-ID: 7328
Freunberger SA, Reum M, Evertz J, Wokaun A, Büchi FN. 2006. Measuring the current distribution in PEFCs with sub-millimeter resolution. Journal of The Electrochemical Society. 153(11), A2158.
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2006 | Journal Article | IST-REx-ID: 7329
Freunberger SA, Reum M, Wokaun A, Büchi FN. 2006. Expanding current distribution measurement in PEFCs to sub-millimeter resolution. Electrochemistry Communications. 8(9), 1435–1438.
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2006 | Journal Article | IST-REx-ID: 7330
Santis M, Freunberger SA, Reiner A, Büchi FN. 2006. Homogenization of the current density in polymer electrolyte fuel cells by in-plane cathode catalyst gradients. Electrochimica Acta. 51(25), 5383–5393.
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2006 | Journal Article | IST-REx-ID: 7331
Freunberger SA, Wokaun A, Büchi FN. 2006. In-plane effects in large-scale PEFCs: II. The influence of cooling strategy on cell performance. Journal of The Electrochemical Society. 153(5), A909.
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2006 | Journal Article | IST-REx-ID: 7332
Freunberger SA, Santis M, Schneider IA, Wokaun A, Büchi FN. 2006. In-plane effects in large-scale PEMFCs. Journal of The Electrochemical Society. 153(2), A396.
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2006 | Journal Article | IST-REx-ID: 8488
Schanda P, Van Melckebeke H, Brutscher B. 2006. Speeding up three-dimensional protein NMR experiments to a few minutes. Journal of the American Chemical Society. 128(28), 9042–9043.
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2006 | Journal Article | IST-REx-ID: 8489
Schanda P, Forge V, Brutscher B. 2006. HET-SOFAST NMR for fast detection of structural compactness and heterogeneity along polypeptide chains. Magnetic Resonance in Chemistry. 44(S1), S177–S184.
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2006 | Journal Article | IST-REx-ID: 8490
Schanda P, Brutscher B. 2006. Hadamard frequency-encoded SOFAST-HMQC for ultrafast two-dimensional protein NMR. Journal of Magnetic Resonance. 178(2), 334–339.
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2006 | Journal Article | IST-REx-ID: 8513
Kaloshin V, Saprykina M. 2006. Generic 3-dimensional volume-preserving diffeomorphisms with superexponential growth of number of periodic orbits. Discrete & Continuous Dynamical Systems - A. 15(2), 611–640.
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2006 | Journal Article | IST-REx-ID: 8514
OTT W, HUNT B, Kaloshin V. 2006. The effect of projections on fractal sets and measures in Banach spaces. Ergodic Theory and Dynamical Systems. 26(3), 869–891.
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2006 | Conference Paper | IST-REx-ID: 8515
Kaloshin V, DOLGOPYAT D, KORALOV L. 2006. Long time behaviour of periodic stochastic flows. XIVth International Congress on Mathematical Physics. International Congress on Mathematical Physics, 290–295.
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2006 | Journal Article | IST-REx-ID: 854
Rogaev E, Moliaka Y, Malyarchuk B, Kondrashov F, Derenko M, Chumakov I, Grigorenko A. 2006. Complete mitochondrial genome and phylogeny of pleistocene mammoth Mammuthus primigenius. PLoS Biology. 4(3), 0403–0410.
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2006 | Journal Article | IST-REx-ID: 873
Kondrashov F, Kondrashov A. 2006. Role of selection in fixation of gene duplications. Journal of Theoretical Biology. 239(2), 141–151.
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2006 | Journal Article | IST-REx-ID: 868
Kondrashov F, Koonin E, Morgunov I, Finogenova T, Kondrashova M. 2006. Evolution of glyoxylate cycle enzymes in Metazoa Evidence of multiple horizontal transfer events and pseudogene formation. Biology Direct. 1.
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2006 | Journal Article | IST-REx-ID: 869
Kondrashov F, Ogurtsov A, Kondrashov A. 2006. Selection in favor of nucleotides G and C diversifies evolution rates and levels of polymorphism at mammalian synonymous sites. Journal of Theoretical Biology. 240(4), 616–626.
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2006 | Journal Article | IST-REx-ID: 903
Babenko V, Basu M, Kondrashov F, Rogozin I, Koonin E. 2006. Signs of positive selection of somatic mutations in human cancers detected by EST sequence analysis. BMC Cancer. 6.
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