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191 Publications


2006 | Journal Article | IST-REx-ID: 3006
Dhonukshe P, Baluška F, Schlicht M, et al. Endocytosis of cell surface material mediates cell plate formation during plant cytokinesis. Developmental Cell. 2006;10(1):137-150. doi:10.1016/j.devcel.2005.11.015
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2006 | Journal Article | IST-REx-ID: 3007
Abas L, Benjamins R, Malenica N, et al. Intracellular trafficking and proteolysis of the Arabidopsis auxin-efflux facilitator PIN2 are involved in root gravitropism. Nature Cell Biology. 2006;8(3):249-256. doi:10.1038/ncb1369
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2006 | Journal Article | IST-REx-ID: 3008
Xu J, Hofhuis H, Heidstra R, Sauer M, Friml J, Scheres B. A molecular framework for plant regeneration. Science. 2006;311(5759):385-388. doi:10.1126/science.1121790
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2006 | Journal Article | IST-REx-ID: 3009 | OA
Paciorek T, Friml J. Auxin signaling. Journal of Cell Science. 2006;119(7):1199-1202. doi:10.1242/jcs.02910
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2006 | Journal Article | IST-REx-ID: 3010
Scarpella E, Marcos D, Friml J, Berleth T. Control of leaf vascular patterning by polar auxin transport. Genes and Development. 2006;20(8):1015-1027. doi:10.1101/gad.1402406
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2006 | Journal Article | IST-REx-ID: 3011
Wiśniewska J, Xu J, Seifertová D, et al. Polar PIN localization directs auxin flow in plants. Science. 2006;312(5775). doi:10.1126/science.1121356
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2006 | Journal Article | IST-REx-ID: 3012
Petrášek J, Mravec J, Bouchard R, et al. PIN proteins perform a rate-limiting function in cellular auxin efflux. Science. 2006;312(5775):914-918. doi:10.1126/science.1123542
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2006 | Journal Article | IST-REx-ID: 3013
Paciorek T, Sauer M, Balla J, Wiśniewska J, Friml J. Immunocytochemical technique for protein localization in sections of plant tissues. Nature Protocols. 2006;1(1):104-107. doi:10.1038/nprot.2006.16
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2006 | Journal Article | IST-REx-ID: 3014
Brewer P, Heisler M, Hejátko J, Friml J, Benková E. In situ hybridization for mRNA detection in Arabidopsis tissue sections. Nature Protocols. 2006;1(3):1462-1467. doi:10.1038/nprot.2006.226
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2006 | Journal Article | IST-REx-ID: 3015
Sauer M, Paciorek T, Benková E, Friml J. Immunocytochemical techniques for whole mount in situ protein localization in plants. Nature Protocols. 2006;1(1):98-103. doi:10.1038/nprot.2006.15
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2006 | Journal Article | IST-REx-ID: 3016
Sauer M, Balla J, Luschnig C, et al. Canalization of auxin flow by Aux/IAA-ARF-dependent feedback regulation of PIN polarity. Genes and Development. 2006;20(20):2902-2911. doi:10.1101/gad.390806
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2006 | Journal Article | IST-REx-ID: 3017
Tanaka H, Dhonukshe P, Brewer P, Friml J. Spatiotemporal asymmetric auxin distribution: A means to coordinate plant development. Cellular and Molecular Life Sciences. 2006;63(23):2738-2754. doi:10.1007/s00018-006-6116-5
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2006 | Journal Article | IST-REx-ID: 3018
Kleine Vehn J, Dhonukshe P, Swarup R, Bennett M, Friml J. Subcellular trafficking of the Arabidopsis auxin influx carrier AUX1 uses a novel pathway distinct from PIN1. Plant Cell. 2006;18(11):3171-3181. doi:10.1105/tpc.106.042770
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2006 | Journal Article | IST-REx-ID: 3020
Hejátko J, Blilou I, Brewer P, Friml J, Scheres B, Benková E. In situ hybridization technique for mRNA detection in whole mount Arabidopsis samples. Nature Protocols. 2006;1(4):1939-1946. doi:10.1038/nprot.2006.333
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2006 | Journal Article | IST-REx-ID: 3152
Kunwar P, Siekhaus DE, Lehmann R. In vivo migration A germ cell perspective. Annual Review of Cell and Developmental Biology. 2006;22:237-265. doi:10.1146/annurev.cellbio.22.010305.103337
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2006 | Journal Article | IST-REx-ID: 1715
Dudu V, Bittig T, Entchev E, Kicheva A, Julicher F, González Gaitán M. Postsynaptic mad signaling at the Drosophila neuromuscular junction. Current Biology. 2006;16(7):625-635. doi:10.1016/j.cub.2006.02.061
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2006 | Journal Article | IST-REx-ID: 1716
Dudu V, Bittig T, Entchev E, Kicheva A, Julicher F, González Gaitán M. Erratum: Postsynaptic mad signaling at the Drosophila neuromuscular junction. Current Biology. 2006;16(12). doi:10.1016/j.cub.2006.06.020
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2006 | Journal Article | IST-REx-ID: 1745
Katsaros G, Rastelli A, Stoffel M, et al. Investigating the lateral motion of SiGe islands by selective chemical etching. Surface Science. 2006;600(12):2608-2613. doi:10.1016/j.susc.2006.04.027
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2006 | Journal Article | IST-REx-ID: 1746
Costantini G, Rastelli A, Manzano C, et al. Interplay between thermodynamics and kinetics in the capping of InAs/GaAs (001) quantum dots. Physical Review Letters. 2006;96(22). doi:10.1103/PhysRevLett.96.226106
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2006 | Journal Article | IST-REx-ID: 1747
Rastelli A, Stoffel M, Katsaros G, et al. Reading the footprints of strained islands. Microelectronics Journal. 2006;37(12):1471-1476. doi:10.1016/j.mejo.2006.05.029
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2006 | Journal Article | IST-REx-ID: 1748
Katsaros G, Rastelli A, Stoffel M, et al. Evolution of buried semiconductor nanostructures and origin of stepped surface mounds during capping. Applied Physics Letters. 2006;89(25). doi:10.1063/1.2405876
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2006 | Journal Article | IST-REx-ID: 1796
Siegert S, Schnierle P, Schnierle B. Novel anti-viral therapy: Drugs that block HIV entry at different target sites. Mini-Reviews in Medicinal Chemistry. 2006;6(5):557-562. doi:10.2174/138955706776876267
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2006 | Journal Article | IST-REx-ID: 1961
Sazanov LA, Hinchliffe P. Structure of the hydrophilic domain of respiratory complex I from Thermus thermophilus. Science. 2006;311(5766):1430-1436. doi:10.1126/science.1123809
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2006 | Journal Article | IST-REx-ID: 1966
Hinchliffe P, Carroll J, Sazanov LA. Identification of a novel subunit of respiratory complex I from Thermus thermophilus. Biochemistry. 2006;45(14):4413-4420. doi:10.1021/bi0600998
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2006 | Journal Article | IST-REx-ID: 854
Rogaev E, Moliaka Y, Malyarchuk B, et al. Complete mitochondrial genome and phylogeny of pleistocene mammoth Mammuthus primigenius. PLoS Biology. 2006;4(3):0403-0410. doi:10.1371/journal.pbio.0040073
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2006 | Journal Article | IST-REx-ID: 868
Kondrashov F, Koonin E, Morgunov I, Finogenova T, Kondrashova M. Evolution of glyoxylate cycle enzymes in Metazoa Evidence of multiple horizontal transfer events and pseudogene formation. Biology Direct. 2006;1. doi:10.1186/1745-6150-1-31
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2006 | Journal Article | IST-REx-ID: 869
Kondrashov F, Ogurtsov A, Kondrashov A. Selection in favor of nucleotides G and C diversifies evolution rates and levels of polymorphism at mammalian synonymous sites. Journal of Theoretical Biology. 2006;240(4):616-626. doi:10.1016/j.jtbi.2005.10.020
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2006 | Journal Article | IST-REx-ID: 873
Kondrashov F, Kondrashov A. Role of selection in fixation of gene duplications. Journal of Theoretical Biology. 2006;239(2):141-151. doi:10.1016/j.jtbi.2005.08.033
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2006 | Journal Article | IST-REx-ID: 903
Babenko V, Basu M, Kondrashov F, Rogozin I, Koonin E. Signs of positive selection of somatic mutations in human cancers detected by EST sequence analysis. BMC Cancer. 2006;6. doi:10.1186/1471-2407-6-36
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2006 | Journal Article | IST-REx-ID: 1461 | OA
Hausel T, Swartz E. Intersection forms of toric hyperkähler varieties. Proceedings of the American Mathematical Society. 2006;134(8):2403-2409. doi:10.1090/S0002-9939-06-08248-7
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2006 | Journal Article | IST-REx-ID: 1462 | OA
Hausel T. Betti numbers of holomorphic symplectic quotients via arithmetic Fourier transform. PNAS. 2006;103(16):6120-6124. doi:10.1073/pnas.0601337103
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2006 | Journal Article | IST-REx-ID: 1033 | OA
Kraemer T, Mark M, Waldburger P, et al. Evidence for Efimov quantum states in an ultracold gas of caesium atoms. Nature. 2006;440(7082):315-318. doi:10.1038/nature04626
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2006 | Conference Paper | IST-REx-ID: 1034 | OA
Nägerl H, Kraemer T, Mark M, et al. Experimental evidence for Efimov quantum states. In: Vol 869. AIP; 2006:269-277. doi:10.1063/1.2400657
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2006 | Conference Paper | IST-REx-ID: 3180
Szeliski R, Zabih R, Scharstein D, et al. A comparative study of energy minimization methods for Markov random fields. In: Vol 3952. Springer; 2006:16-29. doi:10.1007/11744047_2
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2006 | Conference Paper | IST-REx-ID: 3184
Kolmogorov V, Rother C. Comparison of energy minimization algorithms for highly connected graphs. In: Vol 3952 LNCS. Springer; 2006:1-15. doi:10.1007/11744047_1
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2006 | Journal Article | IST-REx-ID: 3185
Kolmogorov V, Criminisi A, Blake A, Cross G, Rother C. Probabilistic fusion of stereo with color and contrast for bilayer segmentation. IEEE Transactions on Pattern Analysis and Machine Intelligence. 2006;28(9):1480-1492. doi:10.1109/TPAMI.2006.193
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2006 | Conference Paper | IST-REx-ID: 3186
Boykov Y, Kolmogorov V, Cremers D, Delong A. An integral solution to surface evolution PDEs via geo cuts. In: Vol 3953. Springer; 2006:409-422. doi:10.1007/11744078_32
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2006 | Conference Paper | IST-REx-ID: 3188
Rother C, Kolmogorov V, Minka T, Blake A. Cosegmentation of image pairs by histogram matching - Incorporating a global constraint into MRFs. In: IEEE; 2006:993-1000. doi:10.1109/CVPR.2006.91
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2006 | Conference Paper | IST-REx-ID: 3189
Criminisi A, Cross G, Blake A, Kolmogorov V. Bilayer segmentation of live video. In: Vol 1. IEEE; 2006:53-60. doi:10.1109/CVPR.2006.69
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2006 | Journal Article | IST-REx-ID: 3190
Kolmogorov V. Convergent tree reweighted message passing for energy minimization. IEEE Transactions on Pattern Analysis and Machine Intelligence. 2006;28(10):1568-1583. doi:10.1109/TPAMI.2006.200
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2006 | Conference Paper | IST-REx-ID: 3214
Maurer U, Oswald Y, Pietrzak KZ, Sjödin J. Luby Rackoff ciphers from weak round functions . In: Vol 4004. Springer; 2006:391-408. doi:10.1007/11761679_24
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2006 | Conference Paper | IST-REx-ID: 3215
Dodis Y, Pietrzak KZ, Przydatek B. Separating sources for encryption and secret sharing. In: Vol 3876. Springer; 2006:601-616. doi:10.1007/11681878_31
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2006 | Conference Paper | IST-REx-ID: 3216
Pietrzak KZ. A tight bound for EMAC. In: Vol 4052. Springer; 2006:168-179. doi:10.1007/11787006_15
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2006 | Conference Paper | IST-REx-ID: 3217
Pietrzak KZ. Composition implies adaptive security in minicrypt. In: Vol 4004. Springer; 2006:328-338. doi:10.1007/11761679_20
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2006 | Book Chapter | IST-REx-ID: 3404
Janovjak HL, Sawhney R, Stark M, Mueller D. Atomic force microscopy. In: Techniques in Microscopy for Biomedical Applications. Vol 2. World Scientific Publishing; 2006:213-284.
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2006 | Journal Article | IST-REx-ID: 3413
Kessler M, Gottschalk K, Janovjak HL, Mueller D, Gaub H. Bacteriorhodopsin folds into the membrane against an external force. Journal of Molecular Biology. 2006;357(2):644-654. doi:10.1016/j.jmb.2005.12.065
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2006 | Journal Article | IST-REx-ID: 3414
Kedrov A, Janovjak HL, Ziegler C, Kühlbrandt W, Mueller D. Observing folding pathways and kinetics of a single sodium-proton antiporter from Escherichia coli. Journal of Molecular Biology. 2006;355(1):2-8. doi:10.1016/j.jmb.2005.10.028
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2006 | Book Review | IST-REx-ID: 3415
Janovjak HL, Kedrov A, Cisneros D, Sapra T, Struckmeier J, Mueller D. Imaging and detecting molecular interactions of single membrane proteins. Neurobiology of Aging. 2006;27:546-561. doi:10.1016/j.neurobiolaging.2005.03.031
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2006 | Preprint | IST-REx-ID: 3431 | OA
Tkacik G, Schneidman E, Berry M, Bialek W. Ising models for networks of real neurons. ArXiv. 2006:1-4.
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2006 | Journal Article | IST-REx-ID: 3437
Betancourt A, Bollback JP. Fitness effects of beneficial mutations: the mutational landscape model in experimental evolution. Current Opinion in Genetics & Development. 2006;16(6):618-623. doi:10.1016/j.gde.2006.10.006
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2006 | Conference Paper | IST-REx-ID: 3449
Chatterjee K, Jagadeesan R, Pitcher C. Games for controls. In: IEEE; 2006:70-82. doi:10.1109/CSFW.2006.14
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2006 | Book Review | IST-REx-ID: 3463
Bischofberger J, Engel D, Frotscher M, Jonas PM. Timing and efficacy of transmitter release at mossy fiber synapses in the hippocampal network. (Review). Pflugers Archiv : European Journal of Physiology. 2006;453(3):361-372. doi:10.1007/s00424-006-0093-2
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2006 | Conference Paper | IST-REx-ID: 3499
Chatterjee K. Nash equilibrium for upward-closed objectives. In: Vol 4207. Springer; 2006:271-286. doi:10.1007/11874683_18
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2006 | Conference Paper | IST-REx-ID: 3500
Chatterjee K, Henzinger TA, Piterman N. Algorithms for Büchi Games. In: ACM; 2006.
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2006 | Patent | IST-REx-ID: 3510
Edelsbrunner H, Fu P, Nekhayev D, Facello M, Williams S. Method, apparatus and computer program products for automatically generating NURBS models of triangulated surfaces using homeomorphism. 2006. doi:US 6,996,505 B1
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2006 | Patent | IST-REx-ID: 3511
Fu P, Nekhayev D, Edelsbrunner H. Manufacturing methods and systems for rapid production of hearing-aid shells. 2006. doi:US 7,050,876 B1
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2006 | Patent | IST-REx-ID: 3512
Fletcher Y, Gloth T, Edelsbrunner H, Fu P. Method, apparatus and computer products that reconstruct surfaces from data points. 2006. doi:US 7,023,432 B2
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2006 | Journal Article | IST-REx-ID: 3522
O’Neill J, Senior T, Csicsvari JL. Place-selective firing of CA1 pyramidal cells during sharp wave/ripple network patterns in exploratory behavior. Neuron. 2006;49(1):143-155. doi:10.1016/j.neuron.2005.10.037
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2006 | Journal Article | IST-REx-ID: 3545
Magill P, Pogosyan A, Sharott A, Csicsvari JL, Bolam J, Brown P. Changes in functional connectivity within the rat striatopallidal axis during global brain activation in vivo. Journal of Neuroscience. 2006;26(23):6318-6329. doi:10.1523/​JNEUROSCI.0620-06.2006
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2006 | Conference Paper | IST-REx-ID: 3559
Cohen Steiner D, Edelsbrunner H, Morozov D. Vines and vineyards by updating persistence in linear time. In: ACM; 2006:119-126. doi:10.1145/1137856.1137877
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2006 | Conference Paper | IST-REx-ID: 3560
Edelsbrunner H, Morozov D, Pascucci V. Persistence-sensitive simplification of functions on 2-manifolds. In: ACM; 2006:127-134. doi:10.1145/1137856.1137878
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2006 | Book Review | IST-REx-ID: 3594
Pemberton J, Swanson G, Barton NH, Livingstone S, Senn H. Hybridisation between red and sika deer in Scotland. Deer. 2006;13(9):22-26.
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2006 | Journal Article | IST-REx-ID: 3607
Turelli M, Barton NH. Will population bottlenecks and multilocus epistasis increase additive genetic variance? Evolution; International Journal of Organic Evolution. 2006;60(9):1763-1776. doi:10.1111/j.0014-3820.2006.tb00521.x
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2006 | Journal Article | IST-REx-ID: 3608
Kirkpatrick M, Barton NH. Chromosome inversions, local adaptation, and speciation. Genetics. 2006;173(1):419-434. doi:10.1534/genetics.105.047985
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2006 | Journal Article | IST-REx-ID: 3609
Yanchukov A, Hofman S, Szymura J, et al. Hybridization of Bombina bombina and B. variegata (Anura, Discoglossidae) at a sharp ecotone in western Ukraine: comparisons across transects and over time. Evolution; International Journal of Organic Evolution. 2006;60(3):583-600. doi:10.1111/j.0014-3820.2006.tb01139.x
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2006 | Journal Article | IST-REx-ID: 3610
Hill W, Barton NH, Turelli M. Prediction of effects of genetic drift on variance components under a general model of epistasis. Theoretical Population Biology. 2006;70(1):56-62. doi:10.1016/j.tpb.2005.10.001
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2006 | Conference Paper | IST-REx-ID: 3677
Ulges A, Lampert C, Keysers D. Spatiogram-based shot distances for video retrieval. In: NIST (National Institute of Standards and Technology, US Department of Commerce); 2006:1-10.
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2006 | Conference Paper | IST-REx-ID: 3679
Ali H, Lampert C, Breuel T. Satellite tracks removal in astronomical images. In: Vol 4225. Springer; 2006:892-901. doi:10.1007/11892755_92
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2006 | Conference Paper | IST-REx-ID: 3680
Lampert C, Mei L, Breuel T. Printing technique classification for document counterfeit detection. In: Vol 1. IEEE; 2006:639-634. doi:10.1109/ICCIAS.2006.294214
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2006 | Conference Paper | IST-REx-ID: 3683
Lampert C, Breuel T. Objective quality measurement for geometric document image restoration. In: Springer; 2006.
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2006 | Conference Paper | IST-REx-ID: 3685
Lampert C. Machine learning for video compression: Macroblock mode decision. In: IEEE; 2006:936-940. doi:10.1109/ICPR.2006.778
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2006 | Conference Paper | IST-REx-ID: 3692
Keysers D, Lampert C, Breuel T. Color image dequantization by constrained diffusion. In: Vol 6058. SPIE; 2006. doi:10.1117/12.648713
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2006 | Conference Paper | IST-REx-ID: 3693
Lampert C, Wirjadi O. Anisotropic Gaussian filtering using fixed point arithmetic. In: IEEE; 2006:1565-1568. doi:10.1109/ICIP.2006.312606
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2006 | Journal Article | IST-REx-ID: 3695 | OA
Lampert C, Wirjadi O. An optimal non-orthogonal separation of the anisotropic Gaussian convolution filter. IEEE Transactions on Image Processing (TIP). 2006;15(11):3501-3513. doi: 10.1109/TIP.2006.877501
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2006 | Book Chapter | IST-REx-ID: 3722
Janovjak HL, Mueller D. Rastersondenmikroskopie. In: Bioanalytik. Spektrum Akademischer Verlag; 2006.
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2006 | Journal Article | IST-REx-ID: 3728
Cieplak M, Filipek S, Janovjak HL, Krzysko K. Pulling single bacteriorhodopsin out of a membrane: Comparison of simulation and experiment. Biochimica et Biophysica Acta (BBA) - Biomembranes. 2006;1758(4):537-544. doi:10.1016/j.bbamem.2006.03.028
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2006 | Journal Article | IST-REx-ID: 3729
Bippes C, Humphris A, Stark M, Mueller D, Janovjak HL. Direct measurement of single-molecule visco-elasticity in atomic force microscope force-extension experiments. European Biophysics Journal. 2006;35(3):287-292. doi:10.1007/s00249-005-0023-9
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2006 | Journal Article | IST-REx-ID: 3750
Le T, Guet CC, Cluzel P. Protein expression enhancement in efflux-deleted mutant bacteria. Protein Expression and Purification. 2006;48(1):28-31.
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2006 | Journal Article | IST-REx-ID: 3755 | OA
Le T, Emonet T, Harlepp S, Guet CC, Cluzel P. Dynamical determinants of drug-inducible gene expression in a single bacterium. Biophysical Journal. 2006;90(9):3315-3321. doi:10.1529/biophysj.105.073353
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2006 | Conference Paper | IST-REx-ID: 3758
Wojtan C, Mucha P, Turk G. Keyframe control of complex particle systems using the adjoint method. In: ACM; 2006:15-23.
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2006 | Journal Article | IST-REx-ID: 3767
Kupczok A, Dittrich P. Determinants of simulated RNA evolution. Journal of Theoretical Biology. 2006;238(3):726-735. doi:10.1016/j.jtbi.2005.06.019
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2006 | Journal Article | IST-REx-ID: 3811
Vida I, Bartos M, Jonas PM. Shunting inhibition improves robustness of gamma oscillations in hippocampal interneuron networks by homogenizing firing rates. Neuron. 2006;49(1):107-117. doi:10.1016/j.neuron.2005.11.036
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2006 | Journal Article | IST-REx-ID: 3813 | OA
Aponte Y, Lien C, Reisinger E, Jonas PM. Hyperpolarization-activated cation channels in fast-spiking interneurons of rat hippocampus. Journal of Physiology. 2006;574(Pt 1):229-243. doi:10.1113/jphysiol.2005.104042
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2006 | Book Review | IST-REx-ID: 3814
Frotscher M, Jonas PM, Sloviter R. Synapses formed by normal and abnormal hippocampal mossy fibers (Review). Cell and Tissue Research. 2006;326(2):361-367. doi:10.1007/s00441-006-0269-2
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2006 | Journal Article | IST-REx-ID: 3815
Bischofberger J, Engel D, Frotscher M, Jonas PM. Timing and efficacy of transmitter release at mossy fiber synapses in the hippocampal network. Pflugers Archiv : European Journal of Physiology. 2006;453(3):361-372. doi:10.1007/s00424-006-0093-2
View | DOI
 

2006 | Journal Article | IST-REx-ID: 3817
Frotscher M, Gundelfinger E, Jonas PM, Neher E, Seeburg P. The most important recent advances in synapse research from my point of view--and what remains to be done. Cell and Tissue Research. 2006;326(2):203-204. doi:10.1007/s00441-006-0325-y
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2006 | Journal Article | IST-REx-ID: 3818
Bischofberger J, Engel D, Li L, Geiger J, Jonas PM. Patch-clamp recording from mossy fiber terminals in hippocampal slices. Nature Protocols. 2006;1(4):2075-2081. doi:10.1038/nprot.2006.312
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2006 | Conference Paper | IST-REx-ID: 3888
Chatterjee K, Henzinger TA. Strategy improvement for stochastic Rabin and Streett games. In: Vol 4137. Schloss Dagstuhl - Leibniz-Zentrum für Informatik; 2006:375-389. doi:10.1007/11817949_25
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2006 | Conference Paper | IST-REx-ID: 3889
Chatterjee K, Doyen L, Henzinger TA, Raskin J. Algorithms for omega-regular games with imperfect information. In: Vol 4207. Springer; 2006:287-302. doi:10.1007/11874683_19
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2006 | Conference Paper | IST-REx-ID: 3890
Chatterjee K, De Alfaro L, Henzinger TA. The complexity of quantitative concurrent parity games. In: SIAM; 2006:678-687. doi:10.1145/1109557.1109631
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2006 | Conference Paper | IST-REx-ID: 3891
Chatterjee K. Concurrent games with tail objectives. In: Vol 4207. Springer; 2006:256-270. doi:10.1007/11874683_17
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