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147 Publications
2005 | Journal Article | IST-REx-ID: 3612
Davison, A., Chiba, S., Barton, N. H., & Clarke, B. (2005). Speciation and gene flow between snails of opposing chirality. PLoS Biology. Public Library of Science. https://doi.org/10.1371/journal.pbio.0030282
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2005 | Journal Article | IST-REx-ID: 3611
Nürnberger, B., Barton, N. H., Kruuk, L., & Vines, T. (2005). Mating patterns in a Bombina hybrid zone: Inferences from adult and full sib genotypes. Heredity. Nature Publishing Group. https://doi.org/10.1038/sj.hdy.6800607
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2005 | Journal Article | IST-REx-ID: 3613
Gardner, M., Fowler, K., Barton, N. H., & Patridge, L. (2005). Genetic variation for total fitness in Drosophila melanogaster: Complex yet replicable patterns. Genetics. Genetics Society of America. https://doi.org/10.1534/genetics.104.032367
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2005 | Journal Article | IST-REx-ID: 3691
Lampert, C. (2005). Boundary regularity of admissible operators. Publicacions Matemàtiques. Universitat Autònoma de Barcelona, Departament de Matemàtique. https://doi.org/10.5565/PUBLMAT_49105_08
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2005 | Journal Article | IST-REx-ID: 3721 | 
Janovjak, H. L., Mueller, D., & Humphris, A. (2005). Molecular force modulation spectroscopy revealing the dynamic response of single bacteriorhodopsins. Biophysical Journal. Biophysical Society. https://doi.org/10.1529/biophysj.104.052746
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2005 | Journal Article | IST-REx-ID: 3741 |
Slonim, N., Atwal, G., Tkačik, G., & Bialek, W. (2005). Information-based clustering. PNAS. National Academy of Sciences. https://doi.org/10.1073/pnas.0507432102
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2005 | Preprint | IST-REx-ID: 3746 |
Slonim, N., Atwal, G., Tkačik, G., & Bialek, W. (2005). Estimating mutual information and multi-information in large networks. ArXiv. ArXiv.
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2005 | Journal Article | IST-REx-ID: 3808
Engel, D., & Jonas, P. M. (2005). Presynaptic action potential amplification by voltage-gated Na+ channels in hippocampal mossy fiber boutons. Neuron. Elsevier. https://doi.org/10.1016/j.neuron.2004.12.048
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2005 | Conference Paper | IST-REx-ID: 3892
Chatterjee, K., Henzinger, T. A., & Jurdziński, M. (2005). Games with secure equilibria (Vol. 3657, pp. 141–161). Presented at the FMCO: Formal Methods for Components and Objects, Springer. https://doi.org/10.1007/11561163_7
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2005 | Conference Paper | IST-REx-ID: 3902
Cremer, S., & Boomsma, J. (2005). The drawback of mobility: invasive species in a globalised world. Presented at the Marie Curie Conference, Elsevier.
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2005 | Journal Article | IST-REx-ID: 3933
Sixt, M. K., Kanazawa, N., Selg, M., Samson, T., Roos, G., Reinhardt, D., … Sorokin, L. (2005). The conduit system transports soluble antigens from the afferent lymph to resident dendritic cells in the T cell area of the lymph node. Immunity. Cell Press. https://doi.org/10.1016/j.immuni.2004.11.013
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2005 | Journal Article | IST-REx-ID: 3983
Sohn, J., Parks, J., Buhrman, G., Brown, P., Kristjánsdóttir, K., Safi, A., … Rudolph, J. (2005). Experimental validation of the docking orientation of Cdc25 with its Cdk2-CycA protein substrate. Biochemistry. ACS. https://doi.org/10.1021/bi0516879
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2005 | Conference Paper | IST-REx-ID: 3982
Wang, Y., Agarwal, P., Brown, P., Edelsbrunner, H., & Rudolph, J. (2005). Coarse and reliable geometric alignment for protein docking (pp. 64–75). Presented at the PSB: Pacific Symposium on Biocomputing, World Scientific Publishing. https://doi.org/10.1142/9789812702456_0007
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2005 | Journal Article | IST-REx-ID: 4144
Ulrich, F., Krieg, M., Schötz, E., Link, V., Castanon, I., Schnabel, V., … Heisenberg, C.-P. J. (2005). Wnt11 functions in gastrulation by controlling cell cohesion through Rab5c and E-cadherin. Developmental Cell. Cell Press. https://doi.org/10.1016/j.devcel.2005.08.011
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2005 | Journal Article | IST-REx-ID: 4138
Barton, N. H., & Polechova, J. (2005). The limitations of adaptive dynamics as a model of evolution. Journal of Evolutionary Biology. Wiley-Blackwell. https://doi.org/10.1111/j.1420-9101.2005.00943.x
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2005 | Journal Article | IST-REx-ID: 4155
Puech, P., Taubenberger, A., Ulrich, F., Krieg, M., Mueller, D., & Heisenberg, C.-P. J. (2005). Measuring cell adhesion forces of primary gastrulating cells from zebrafish using atomic force microscopy. Journal of Cell Science. Company of Biologists. https://doi.org/10.1242/jcs.02547
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2005 | Journal Article | IST-REx-ID: 4171
Montero, J., Carvalho, L., Wilsch Bräuninger, M., Kilian, B., Mustafa, C., & Heisenberg, C.-P. J. (2005). Shield formation at the onset of zebrafish gastrulation. Development. Company of Biologists. https://doi.org/10.1242/dev.01667
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2005 | Journal Article | IST-REx-ID: 4249
Polechova, J., & Barton, N. H. (2005). Speciation through competition: A critical review. Evolution; International Journal of Organic Evolution. Wiley-Blackwell. https://doi.org/10.1111/j.0014-3820.2005.tb01771.x
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2005 | Journal Article | IST-REx-ID: 4251
Barton, N. H., & Otto, S. (2005). Evolution of recombination due to random drift. Genetics. Genetics Society of America. https://doi.org/10.1534/genetics.104.032821
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2005 | Journal Article | IST-REx-ID: 4252 |
Johnson, T., & Barton, N. H. (2005). Theoretical models of selection and mutationon quantitative traits. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. Royal Society, The. https://doi.org/10.1098/rstb.2005.1667
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2005 | Conference Paper | IST-REx-ID: 4404
Alur, R., Cerny, P., Madhusudan, P., & Nam, W. (2005). Synthesis of interface specifications for Java classes (pp. 98–109). Presented at the POPL: Principles of Programming Languages, ACM. https://doi.org/1542
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2005 | Conference Paper | IST-REx-ID: 4412
Matic, S., & Henzinger, T. A. (2005). Trading end-to-end latency for composability (pp. 99–110). Presented at the RTSS: Real-Time Systems Symposium, IEEE. https://doi.org/10.1109/RTSS.2005.43
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2005 | Conference Paper | IST-REx-ID: 4418
Kirsch, C., Sanvido, M., & Henzinger, T. A. (2005). A programmable microkernel for real-time systems (pp. 35–45). Presented at the VEE: Virtual Execution Environments, ACM. https://doi.org/10.1145/1064979.1064986
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2005 | Journal Article | IST-REx-ID: 4454
Henzinger, T. A., Majumdar, R., & Raskin, J. (2005). A classification of symbolic transition systems. ACM Transactions on Computational Logic (TOCL). ACM. https://doi.org/10.1145/1042038.1042039
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2005 | Conference Paper | IST-REx-ID: 4455
Henzinger, T. A., Majumdar, R., & Prabhu, V. (2005). Quantifying similarities between timed systems (Vol. 3829, pp. 226–241). Presented at the FORMATS: Formal Modeling and Analysis of Timed Systems, Springer. https://doi.org/10.1007/11603009_18
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2005 | Conference Paper | IST-REx-ID: 4456
Henzinger, T. A., Jhala, R., & Majumdar, R. (2005). Permissive interfaces (pp. 31–40). Presented at the FSE: Foundations of Software Engineering, ACM. https://doi.org/10.1145/1081706.1081713
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2005 | Conference Paper | IST-REx-ID: 4457
Henzinger, T. A., Kirsch, C., & Matic, S. (2005). Composable code generation for distributed Giotto (pp. 21–30). Presented at the LCTES: Languages, Compilers, and Tools for Embedded Systems, ACM. https://doi.org/10.1145/1065910.1065914
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2005 | Conference Paper | IST-REx-ID: 4536
Doyen, L., Henzinger, T. A., & Raskin, J. (2005). Automatic rectangular refinement of affine hybrid systems (Vol. 3829, pp. 144–161). Presented at the FORMATS: Formal Modeling and Analysis of Timed Systems, Springer. https://doi.org/DOI: 10.1007/11603009_13
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2005 | Conference Paper | IST-REx-ID: 4541
Chatterjee, K., & Henzinger, T. A. (2005). Semiperfect-information games (Vol. 3821, pp. 1–18). Presented at the FSTTCS: Foundations of Software Technology and Theoretical Computer Science, Schloss Dagstuhl - Leibniz-Zentrum für Informatik. https://doi.org/10.1007/11590156_1
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2005 | Conference Paper | IST-REx-ID: 4553
Chatterjee, K., De Alfaro, L., & Henzinger, T. A. (2005). The complexity of stochastic Rabin and Streett games (Vol. 3580, pp. 878–890). Presented at the ICALP: Automata, Languages and Programming, Springer. https://doi.org/10.1007/11523468_71
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2005 | Conference Paper | IST-REx-ID: 4554
Chatterjee, K., Henzinger, T. A., & Jurdziński, M. (2005). Mean-payoff parity games (pp. 178–187). Presented at the LICS: Logic in Computer Science, IEEE. https://doi.org/10.1109/LICS.2005.26
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2005 | Conference Paper | IST-REx-ID: 4560
Chakrabarti, A., Chatterjee, K., Henzinger, T. A., Kupferman, O., & Majumdar, R. (2005). Verifying quantitative properties using bound functions (Vol. 3725, pp. 50–64). Presented at the CHARME: Correct Hardware Design and Verification Methods, Springer. https://doi.org/10.1007/11560548_7
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2005 | Conference Paper | IST-REx-ID: 4557
Chatterjee, K., Henzinger, T. A., Jhala, R., & Majumdar, R. (2005). Counterexample-guided planning (pp. 104–111). Presented at the UAI: Uncertainty in Artificial Intelligence, AUAI Press.
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2005 | Conference Paper | IST-REx-ID: 4579
Beyer, D., Henzinger, T. A., Jhala, R., & Majumdar, R. (2005). Checking memory safety with BLAST (Vol. 3442, pp. 2–18). Presented at the FASE: Fundamental Approaches To Software Engineering, Springer. https://doi.org/10.1007/978-3-540-31984-9_2
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2005 | Conference Paper | IST-REx-ID: 4576
Beyer, D., Chakrabarti, A., & Henzinger, T. A. (2005). Web service interfaces (pp. 148–159). Presented at the WWW: World Wide Web Conference, ACM. https://doi.org/10.1145/1060745.1060770
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2005 | Journal Article | IST-REx-ID: 4625
De Alfaro, L., Faella, M., Henzinger, T. A., Majumdar, R., & Stoelinga, M. (2005). Model checking discounted temporal properties. Theoretical Computer Science. Elsevier. https://doi.org/10.1016/j.tcs.2005.07.033
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2005 | Conference Paper | IST-REx-ID: 4624
De Alfaro, L., & Henzinger, T. A. (2005). Interface-based design (Vol. 195, pp. 83–104). Presented at the Engineering Theories of Software Intensive Systems, Springer. https://doi.org/10.1007/1-4020-3532-2_3
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2005 | Conference Paper | IST-REx-ID: 575
Hosten, O., Rakher, M., Barreiro, J., Peters, N., & Kwiat, P. (2005). Counterfactual quantum computation (Vol. 1, pp. 365–367). Presented at the QELS: Quantum Electronics and Laser Science, IEEE. https://doi.org/ 10.1109/QELS.2005.1548783
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2005 | Journal Article | IST-REx-ID: 6153
de Bono, M., & Villu Maricq, A. (2005). Neuronal substrates of complex behaviors in C. elegans. Annual Review of Neuroscience. Annual Reviews. https://doi.org/10.1146/annurev.neuro.27.070203.144259
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| PubMed | Europe PMC
2005 | Journal Article | IST-REx-ID: 6154
Cheung, B. H. H., Cohen, M., Rogers, C., Albayram, O., & de Bono, M. (2005). Experience-dependent modulation of C. elegans behavior by ambient oxygen. Current Biology. Elsevier. https://doi.org/10.1016/j.cub.2005.04.017
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| PubMed | Europe PMC
2005 | Journal Article | IST-REx-ID: 8028 |
Vogels, T. P., & Abbott, L. F. (2005). Signal propagation and logic gating in networks of integrate-and-fire neurons. Journal of Neuroscience. Society for Neuroscience. https://doi.org/10.1523/jneurosci.3508-05.2005
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| PubMed | Europe PMC
2005 | Journal Article | IST-REx-ID: 8029
Vogels, T. P., Rajan, K., & Abbott, L. F. (2005). Neural network dynamics. Annual Review of Neuroscience. Annual Reviews. https://doi.org/10.1146/annurev.neuro.28.061604.135637
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| PubMed | Europe PMC
2005 | Journal Article | IST-REx-ID: 9491 |
Tran, R. K., Henikoff, J. G., Zilberman, D., Ditt, R. F., Jacobsen, S. E., & Henikoff, S. (2005). DNA methylation profiling identifies CG methylation clusters in Arabidopsis genes. Current Biology. Elsevier. https://doi.org/10.1016/j.cub.2005.01.008
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| PubMed | Europe PMC
2005 | Journal Article | IST-REx-ID: 9514 |
Tran, R. K., Zilberman, D., de Bustos, C., Ditt, R. F., Henikoff, J. G., Lindroth, A. M., … Henikoff, S. (2005). Chromatin and siRNA pathways cooperate to maintain DNA methylation of small transposable elements in Arabidopsis. Genome Biology. Springer Nature. https://doi.org/10.1186/gb-2005-6-11-r90
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2005 | Journal Article | IST-REx-ID: 843
Yampolsky, L., Kondrashov, F., & Kondrashov, A. (2005). Distribution of the strength of selection against amino acid replacements in human proteins. Human Molecular Genetics. Oxford University Press. https://doi.org/10.1093/hmg/ddi350
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2005 | Journal Article | IST-REx-ID: 8491
Schanda, P., Kupče, Ē., & Brutscher, B. (2005). SOFAST-HMQC experiments for recording two-dimensional deteronuclear correlation spectra of proteins within a few seconds. Journal of Biomolecular NMR. Springer Nature. https://doi.org/10.1007/s10858-005-4425-x
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2005 | Journal Article | IST-REx-ID: 8492
Schanda, P., & Brutscher, B. (2005). Very fast two-dimensional NMR spectroscopy for real-time investigation of dynamic events in proteins on the time scale of seconds. Journal of the American Chemical Society. American Chemical Society. https://doi.org/10.1021/ja051306e
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2005 | Journal Article | IST-REx-ID: 8516
Bourgain, J., & Kaloshin, V. (2005). On diffusion in high-dimensional Hamiltonian systems. Journal of Functional Analysis. Elsevier. https://doi.org/10.1016/j.jfa.2004.09.006
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2005 | Journal Article | IST-REx-ID: 877
Kondrashov, F. (2005). The analysis of monomer sequences in protein and tRNA and the manifestation of the compensation of pathogenic deviations in their evolution. Biofizika. Pleiades Publishing.
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2005 | Journal Article | IST-REx-ID: 878
Kondrashov, F. (2005). In search of the limits of evolution. Nature Genetics. Nature Publishing Group. https://doi.org/10.1038/ng0105-9
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