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147 Publications


2005 | Conference Paper | IST-REx-ID: 3183
Kolmogorov, Vladimir, et al. Bi-Layer Segmentation of Binocular Stereo Video. Vol. 2, IEEE, 2005, pp. 407–14, doi:10.1109/CVPR.2005.91.
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2005 | Conference Paper | IST-REx-ID: 3182
Kolmogorov, Vladimir, and Yuri Boykov. What Metrics Can Be Approximated by Geo Cuts or Global Optimization of Length Area and Flux. Vol. 1, IEEE, 2005, pp. 564–71, doi:10.1109/ICCV.2005.252.
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2005 | Conference Paper | IST-REx-ID: 3181
Kolmogorov, Vladimir, and Martin Wainwright. On the Optimality of Tree Reweighted Max Product Message Passing. AUAI Press, 2005, pp. 316–23.
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2005 | Journal Article | IST-REx-ID: 3417
Kuhn, Michael, et al. “Automated Alignment and Pattern Recognition of Single-Molecule Force Spectroscopy Data.” Journal of Microscopy, vol. 218, no. 2, Wiley-Blackwell, 2005, pp. 125–32, doi:10.1111/j.1365-2818.2005.01478.x.
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2005 | Journal Article | IST-REx-ID: 3416 | OA
Janovjak, Harald L., et al. “Complex Stability of Single Proteins Explored by Forced Unfolding Experiments.” Biophysical Journal, vol. 88, no. 5, Biophysical Society, 2005, pp. 37–39, doi:10.1529/biophysj.105.059774.
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2005 | Journal Article | IST-REx-ID: 3418
Janovjak, Harald L., et al. “Hydrodynamic Effects in Fast AFM Single Molecule Force Measurements.” European Biophysics Journal, vol. 34, no. 1, Springer, 2005, pp. 91–96, doi:10.1007/s00249-004-0430-3.
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2005 | Book Chapter | IST-REx-ID: 3433
Bollback, Jonathan P. “Posterior Mapping and Posterior Predictive Distributions.” Statistical Methods in Molecular Evolution, edited by Rasmus Nielsen, Springer, 2005, pp. 439–62, doi:10.1007/0-387-27733-1.
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2005 | Patent | IST-REx-ID: 3509 | OA
Williams, Steven, et al. Methods, Apparatus and Computer Program Products for Modeling Three-Dimensional Colored Objects. 2005.
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2005 | Conference Paper | IST-REx-ID: 3558
Attali, Dominique, et al. Extraction and Simplification of Iso-Surfaces in Tandem. ACM, 2005, pp. 139–48.
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2005 | Book Chapter | IST-REx-ID: 3576
Edelsbrunner, Herbert, and Patrice Koehl. “The Geometry of Biomolecular Solvation.” Combinatorial and Computational Geometry, vol. 52, Cambridge University Press, 2005, pp. 243–75.
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2005 | Journal Article | IST-REx-ID: 3612
Davison, Angus, et al. “Speciation and Gene Flow between Snails of Opposing Chirality.” PLoS Biology, vol. 3, no. 9, Public Library of Science, 2005, doi:10.1371/journal.pbio.0030282.
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2005 | Journal Article | IST-REx-ID: 3611
Nürnberger, Beate, et al. “Mating Patterns in a Bombina Hybrid Zone: Inferences from Adult and Full Sib Genotypes.” Heredity, vol. 94, no. 2, Nature Publishing Group, 2005, pp. 247–57, doi:10.1038/sj.hdy.6800607.
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2005 | Journal Article | IST-REx-ID: 3613
Gardner, Michael, et al. “Genetic Variation for Total Fitness in Drosophila Melanogaster: Complex yet Replicable Patterns.” Genetics, vol. 169, no. 3, Genetics Society of America, 2005, pp. 1553–71, doi:10.1534/genetics.104.032367.
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2005 | Journal Article | IST-REx-ID: 3691
Lampert, Christoph. “Boundary Regularity of Admissible Operators.” Publicacions Matemàtiques, vol. 49, no. 1, Universitat Autònoma de Barcelona, Departament de Matemàtique, 2005, pp. 179–95, doi:10.5565/PUBLMAT_49105_08.
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2005 | Journal Article | IST-REx-ID: 3721 | OA
Janovjak, Harald L., et al. “Molecular Force Modulation Spectroscopy Revealing the Dynamic Response of Single Bacteriorhodopsins.” Biophysical Journal, vol. 88, no. 2, Biophysical Society, 2005, pp. 1423–31, doi:10.1529/biophysj.104.052746.
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2005 | Journal Article | IST-REx-ID: 3741 | OA
Slonim, N., et al. “Information-Based Clustering.” PNAS, vol. 102, no. 51, National Academy of Sciences, 2005, pp. 18297–302, doi:10.1073/pnas.0507432102.
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2005 | Preprint | IST-REx-ID: 3746 | OA
Slonim, Noam, et al. “Estimating Mutual Information and Multi-Information in Large Networks.” ArXiv, ArXiv, 2005, pp. 1–11.
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2005 | Journal Article | IST-REx-ID: 3808
Engel, Dominique, and Peter M. Jonas. “Presynaptic Action Potential Amplification by Voltage-Gated Na+ Channels in Hippocampal Mossy Fiber Boutons.” Neuron, vol. 45, no. 3, Elsevier, 2005, pp. 405–17, doi:10.1016/j.neuron.2004.12.048 .
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2005 | Conference Paper | IST-REx-ID: 3892
Chatterjee, Krishnendu, et al. Games with Secure Equilibria. Vol. 3657, Springer, 2005, pp. 141–61, doi:10.1007/11561163_7.
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2005 | Conference Paper | IST-REx-ID: 3902
Cremer, Sylvia, and Jacobus Boomsma. The Drawback of Mobility: Invasive Species in a Globalised World. Elsevier, 2005.
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2005 | Journal Article | IST-REx-ID: 3933
Sixt, Michael K., et al. “The Conduit System Transports Soluble Antigens from the Afferent Lymph to Resident Dendritic Cells in the T Cell Area of the Lymph Node.” Immunity, vol. 22, no. 1, Cell Press, 2005, pp. 19–29, doi:10.1016/j.immuni.2004.11.013.
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2005 | Journal Article | IST-REx-ID: 3983
Sohn, Jungsan, et al. “Experimental Validation of the Docking Orientation of Cdc25 with Its Cdk2-CycA Protein Substrate.” Biochemistry, vol. 44, no. 50, ACS, 2005, pp. 16563–73, doi:10.1021/bi0516879.
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2005 | Conference Paper | IST-REx-ID: 3982
Wang, Yusu, et al. Coarse and Reliable Geometric Alignment for Protein Docking. World Scientific Publishing, 2005, pp. 64–75, doi:10.1142/9789812702456_0007.
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2005 | Journal Article | IST-REx-ID: 4144
Ulrich, Florian, et al. “Wnt11 Functions in Gastrulation by Controlling Cell Cohesion through Rab5c and E-Cadherin.” Developmental Cell, vol. 9, no. 4, Cell Press, 2005, pp. 555–64, doi:10.1016/j.devcel.2005.08.011.
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2005 | Journal Article | IST-REx-ID: 4138
Barton, Nicholas H., and Jitka Polechova. “The Limitations of Adaptive Dynamics as a Model of Evolution.” Journal of Evolutionary Biology, vol. 18, no. 5, Wiley-Blackwell, 2005, pp. 1186–90, doi:10.1111/j.1420-9101.2005.00943.x.
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2005 | Journal Article | IST-REx-ID: 4155
Puech, Pierre, et al. “Measuring Cell Adhesion Forces of Primary Gastrulating Cells from Zebrafish Using Atomic Force Microscopy.” Journal of Cell Science, vol. 118, no. 18, Company of Biologists, 2005, pp. 4199–206, doi:10.1242/​jcs.02547.
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2005 | Journal Article | IST-REx-ID: 4171
Montero, Juan, et al. “Shield Formation at the Onset of Zebrafish Gastrulation.” Development, vol. 132, no. 6, Company of Biologists, 2005, pp. 1187–98, doi:10.1242/dev.01667.
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2005 | Journal Article | IST-REx-ID: 4249
Polechova, Jitka, and Nicholas H. Barton. “Speciation through Competition: A Critical Review.” Evolution; International Journal of Organic Evolution, vol. 59, no. 6, Wiley-Blackwell, 2005, pp. 1194–210, doi:10.1111/j.0014-3820.2005.tb01771.x.
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2005 | Journal Article | IST-REx-ID: 4251
Barton, Nicholas H., and Sarah Otto. “Evolution of Recombination Due to Random Drift.” Genetics, vol. 169, no. 4, Genetics Society of America, 2005, pp. 2353–70, doi:10.1534/genetics.104.032821.
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2005 | Journal Article | IST-REx-ID: 4252 | OA
Johnson, Toby, and Nicholas H. Barton. “Theoretical Models of Selection and Mutationon Quantitative Traits.” Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences, vol. 360, no. 1459, Royal Society, The, 2005, pp. 1411–25, doi:10.1098/rstb.2005.1667.
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2005 | Conference Paper | IST-REx-ID: 4404
Alur, Rajeev, et al. Synthesis of Interface Specifications for Java Classes. ACM, 2005, pp. 98–109, doi:1542.
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2005 | Conference Paper | IST-REx-ID: 4412
Matic, Slobodan, and Thomas A. Henzinger. Trading End-to-End Latency for Composability. IEEE, 2005, pp. 99–110, doi:10.1109/RTSS.2005.43.
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2005 | Conference Paper | IST-REx-ID: 4418
Kirsch, Christoph, et al. A Programmable Microkernel for Real-Time Systems. ACM, 2005, pp. 35–45, doi:10.1145/1064979.1064986.
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2005 | Journal Article | IST-REx-ID: 4454
Henzinger, Thomas A., et al. “A Classification of Symbolic Transition Systems.” ACM Transactions on Computational Logic (TOCL), vol. 6, no. 1, ACM, 2005, pp. 1–32, doi:10.1145/1042038.1042039.
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2005 | Conference Paper | IST-REx-ID: 4455
Henzinger, Thomas A., et al. Quantifying Similarities between Timed Systems. Vol. 3829, Springer, 2005, pp. 226–41, doi:10.1007/11603009_18.
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2005 | Conference Paper | IST-REx-ID: 4456
Henzinger, Thomas A., et al. Permissive Interfaces. ACM, 2005, pp. 31–40, doi:10.1145/1081706.1081713.
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2005 | Conference Paper | IST-REx-ID: 4457
Henzinger, Thomas A., et al. Composable Code Generation for Distributed Giotto. ACM, 2005, pp. 21–30, doi:10.1145/1065910.1065914.
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2005 | Conference Paper | IST-REx-ID: 4536
Doyen, Laurent, et al. Automatic Rectangular Refinement of Affine Hybrid Systems. Vol. 3829, Springer, 2005, pp. 144–61, doi:DOI: 10.1007/11603009_13.
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2005 | Conference Paper | IST-REx-ID: 4541
Chatterjee, Krishnendu, and Thomas A. Henzinger. Semiperfect-Information Games. Vol. 3821, Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2005, pp. 1–18, doi:10.1007/11590156_1.
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2005 | Conference Paper | IST-REx-ID: 4553
Chatterjee, Krishnendu, et al. The Complexity of Stochastic Rabin and Streett Games. Vol. 3580, Springer, 2005, pp. 878–90, doi:10.1007/11523468_71.
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2005 | Conference Paper | IST-REx-ID: 4554
Chatterjee, Krishnendu, et al. Mean-Payoff Parity Games. IEEE, 2005, pp. 178–87, doi:10.1109/LICS.2005.26.
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2005 | Conference Paper | IST-REx-ID: 4560
Chakrabarti, Arindam, et al. Verifying Quantitative Properties Using Bound Functions. Vol. 3725, Springer, 2005, pp. 50–64, doi:10.1007/11560548_7.
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2005 | Conference Paper | IST-REx-ID: 4557
Chatterjee, Krishnendu, et al. Counterexample-Guided Planning. AUAI Press, 2005, pp. 104–11.
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2005 | Conference Paper | IST-REx-ID: 4579
Beyer, Dirk, et al. Checking Memory Safety with BLAST. Vol. 3442, Springer, 2005, pp. 2–18, doi:10.1007/978-3-540-31984-9_2.
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2005 | Conference Paper | IST-REx-ID: 4576
Beyer, Dirk, et al. Web Service Interfaces. ACM, 2005, pp. 148–59, doi:10.1145/1060745.1060770.
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2005 | Journal Article | IST-REx-ID: 4625
De Alfaro, Luca, et al. “Model Checking Discounted Temporal Properties.” Theoretical Computer Science, vol. 345, no. 1, Elsevier, 2005, pp. 139–70, doi:10.1016/j.tcs.2005.07.033.
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2005 | Conference Paper | IST-REx-ID: 4624
De Alfaro, Luca, and Thomas A. Henzinger. Interface-Based Design. Vol. 195, Springer, 2005, pp. 83–104, doi:10.1007/1-4020-3532-2_3.
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2005 | Conference Paper | IST-REx-ID: 575
Hosten, Onur, et al. Counterfactual Quantum Computation. Vol. 1, IEEE, 2005, pp. 365–67, doi: 10.1109/QELS.2005.1548783.
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2005 | Journal Article | IST-REx-ID: 6153
de Bono, Mario, and Andres Villu Maricq. “Neuronal Substrates of Complex Behaviors in C. Elegans.” Annual Review of Neuroscience, vol. 28, Annual Reviews, 2005, pp. 451–501, doi:10.1146/annurev.neuro.27.070203.144259.
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2005 | Journal Article | IST-REx-ID: 6154
Cheung, Benny H. H., et al. “Experience-Dependent Modulation of C. Elegans Behavior by Ambient Oxygen.” Current Biology, vol. 15, no. 10, Elsevier, 2005, pp. 905–17, doi:10.1016/j.cub.2005.04.017.
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