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147 Publications


2005 | Journal Article | IST-REx-ID: 3933
Sixt, Michael K., et al. “The Conduit System Transports Soluble Antigens from the Afferent Lymph to Resident Dendritic Cells in the T Cell Area of the Lymph Node.” Immunity, vol. 22, no. 1, Cell Press, 2005, pp. 19–29, doi:10.1016/j.immuni.2004.11.013.
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2005 | Journal Article | IST-REx-ID: 3983
Sohn, Jungsan, et al. “Experimental Validation of the Docking Orientation of Cdc25 with Its Cdk2-CycA Protein Substrate.” Biochemistry, vol. 44, no. 50, ACS, 2005, pp. 16563–73, doi:10.1021/bi0516879.
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2005 | Conference Paper | IST-REx-ID: 3982
Wang, Yusu, et al. Coarse and Reliable Geometric Alignment for Protein Docking. World Scientific Publishing, 2005, pp. 64–75, doi:10.1142/9789812702456_0007.
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2005 | Journal Article | IST-REx-ID: 4144
Ulrich, Florian, et al. “Wnt11 Functions in Gastrulation by Controlling Cell Cohesion through Rab5c and E-Cadherin.” Developmental Cell, vol. 9, no. 4, Cell Press, 2005, pp. 555–64, doi:10.1016/j.devcel.2005.08.011.
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2005 | Journal Article | IST-REx-ID: 4138
Barton, Nicholas H., and Jitka Polechova. “The Limitations of Adaptive Dynamics as a Model of Evolution.” Journal of Evolutionary Biology, vol. 18, no. 5, Wiley-Blackwell, 2005, pp. 1186–90, doi:10.1111/j.1420-9101.2005.00943.x.
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2005 | Journal Article | IST-REx-ID: 4155
Puech, Pierre, et al. “Measuring Cell Adhesion Forces of Primary Gastrulating Cells from Zebrafish Using Atomic Force Microscopy.” Journal of Cell Science, vol. 118, no. 18, Company of Biologists, 2005, pp. 4199–206, doi:10.1242/​jcs.02547.
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2005 | Journal Article | IST-REx-ID: 4171
Montero, Juan, et al. “Shield Formation at the Onset of Zebrafish Gastrulation.” Development, vol. 132, no. 6, Company of Biologists, 2005, pp. 1187–98, doi:10.1242/dev.01667.
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2005 | Journal Article | IST-REx-ID: 4249
Polechova, Jitka, and Nicholas H. Barton. “Speciation through Competition: A Critical Review.” Evolution; International Journal of Organic Evolution, vol. 59, no. 6, Wiley-Blackwell, 2005, pp. 1194–210, doi:10.1111/j.0014-3820.2005.tb01771.x.
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2005 | Journal Article | IST-REx-ID: 4251
Barton, Nicholas H., and Sarah Otto. “Evolution of Recombination Due to Random Drift.” Genetics, vol. 169, no. 4, Genetics Society of America, 2005, pp. 2353–70, doi:10.1534/genetics.104.032821.
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2005 | Journal Article | IST-REx-ID: 4252 | OA
Johnson, Toby, and Nicholas H. Barton. “Theoretical Models of Selection and Mutationon Quantitative Traits.” Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences, vol. 360, no. 1459, Royal Society, The, 2005, pp. 1411–25, doi:10.1098/rstb.2005.1667.
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2005 | Conference Paper | IST-REx-ID: 4404
Alur, Rajeev, et al. Synthesis of Interface Specifications for Java Classes. ACM, 2005, pp. 98–109, doi:1542.
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2005 | Conference Paper | IST-REx-ID: 4412
Matic, Slobodan, and Thomas A. Henzinger. Trading End-to-End Latency for Composability. IEEE, 2005, pp. 99–110, doi:10.1109/RTSS.2005.43.
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2005 | Conference Paper | IST-REx-ID: 4418
Kirsch, Christoph, et al. A Programmable Microkernel for Real-Time Systems. ACM, 2005, pp. 35–45, doi:10.1145/1064979.1064986.
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2005 | Journal Article | IST-REx-ID: 4454
Henzinger, Thomas A., et al. “A Classification of Symbolic Transition Systems.” ACM Transactions on Computational Logic (TOCL), vol. 6, no. 1, ACM, 2005, pp. 1–32, doi:10.1145/1042038.1042039.
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2005 | Conference Paper | IST-REx-ID: 4455
Henzinger, Thomas A., et al. Quantifying Similarities between Timed Systems. Vol. 3829, Springer, 2005, pp. 226–41, doi:10.1007/11603009_18.
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2005 | Conference Paper | IST-REx-ID: 4456
Henzinger, Thomas A., et al. Permissive Interfaces. ACM, 2005, pp. 31–40, doi:10.1145/1081706.1081713.
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2005 | Conference Paper | IST-REx-ID: 4457
Henzinger, Thomas A., et al. Composable Code Generation for Distributed Giotto. ACM, 2005, pp. 21–30, doi:10.1145/1065910.1065914.
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2005 | Conference Paper | IST-REx-ID: 4536
Doyen, Laurent, et al. Automatic Rectangular Refinement of Affine Hybrid Systems. Vol. 3829, Springer, 2005, pp. 144–61, doi:DOI: 10.1007/11603009_13.
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2005 | Conference Paper | IST-REx-ID: 4541
Chatterjee, Krishnendu, and Thomas A. Henzinger. Semiperfect-Information Games. Vol. 3821, Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2005, pp. 1–18, doi:10.1007/11590156_1.
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2005 | Conference Paper | IST-REx-ID: 4553
Chatterjee, Krishnendu, et al. The Complexity of Stochastic Rabin and Streett Games. Vol. 3580, Springer, 2005, pp. 878–90, doi:10.1007/11523468_71.
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2005 | Conference Paper | IST-REx-ID: 4554
Chatterjee, Krishnendu, et al. Mean-Payoff Parity Games. IEEE, 2005, pp. 178–87, doi:10.1109/LICS.2005.26.
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2005 | Conference Paper | IST-REx-ID: 4560
Chakrabarti, Arindam, et al. Verifying Quantitative Properties Using Bound Functions. Vol. 3725, Springer, 2005, pp. 50–64, doi:10.1007/11560548_7.
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2005 | Conference Paper | IST-REx-ID: 4557
Chatterjee, Krishnendu, et al. Counterexample-Guided Planning. AUAI Press, 2005, pp. 104–11.
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2005 | Conference Paper | IST-REx-ID: 4579
Beyer, Dirk, et al. Checking Memory Safety with BLAST. Vol. 3442, Springer, 2005, pp. 2–18, doi:10.1007/978-3-540-31984-9_2.
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2005 | Conference Paper | IST-REx-ID: 4576
Beyer, Dirk, et al. Web Service Interfaces. ACM, 2005, pp. 148–59, doi:10.1145/1060745.1060770.
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2005 | Journal Article | IST-REx-ID: 4625
De Alfaro, Luca, et al. “Model Checking Discounted Temporal Properties.” Theoretical Computer Science, vol. 345, no. 1, Elsevier, 2005, pp. 139–70, doi:10.1016/j.tcs.2005.07.033.
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2005 | Conference Paper | IST-REx-ID: 4624
De Alfaro, Luca, and Thomas A. Henzinger. Interface-Based Design. Vol. 195, Springer, 2005, pp. 83–104, doi:10.1007/1-4020-3532-2_3.
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2005 | Conference Paper | IST-REx-ID: 575
Hosten, Onur, et al. Counterfactual Quantum Computation. Vol. 1, IEEE, 2005, pp. 365–67, doi: 10.1109/QELS.2005.1548783.
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2005 | Journal Article | IST-REx-ID: 6153
de Bono, Mario, and Andres Villu Maricq. “Neuronal Substrates of Complex Behaviors in C. Elegans.” Annual Review of Neuroscience, vol. 28, Annual Reviews, 2005, pp. 451–501, doi:10.1146/annurev.neuro.27.070203.144259.
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2005 | Journal Article | IST-REx-ID: 6154
Cheung, Benny H. H., et al. “Experience-Dependent Modulation of C. Elegans Behavior by Ambient Oxygen.” Current Biology, vol. 15, no. 10, Elsevier, 2005, pp. 905–17, doi:10.1016/j.cub.2005.04.017.
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2005 | Journal Article | IST-REx-ID: 8028 | OA
Vogels, Tim P., and L. F. Abbott. “Signal Propagation and Logic Gating in Networks of Integrate-and-Fire Neurons.” Journal of Neuroscience, vol. 25, no. 46, Society for Neuroscience, 2005, pp. 10786–95, doi:10.1523/jneurosci.3508-05.2005.
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2005 | Journal Article | IST-REx-ID: 8029
Vogels, Tim P., et al. “Neural Network Dynamics.” Annual Review of Neuroscience, vol. 28, no. 1, Annual Reviews, 2005, pp. 357–76, doi:10.1146/annurev.neuro.28.061604.135637.
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2005 | Journal Article | IST-REx-ID: 9491 | OA
Tran, Robert K., et al. “DNA Methylation Profiling Identifies CG Methylation Clusters in Arabidopsis Genes.” Current Biology, vol. 15, no. 2, Elsevier, 2005, pp. 154–59, doi:10.1016/j.cub.2005.01.008.
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2005 | Journal Article | IST-REx-ID: 9514 | OA
Tran, Robert K., et al. “Chromatin and SiRNA Pathways Cooperate to Maintain DNA Methylation of Small Transposable Elements in Arabidopsis.” Genome Biology, vol. 6, no. 11, R90, Springer Nature, 2005, doi:10.1186/gb-2005-6-11-r90.
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2005 | Journal Article | IST-REx-ID: 843
Yampolsky, Lev, et al. “Distribution of the Strength of Selection against Amino Acid Replacements in Human Proteins.” Human Molecular Genetics, vol. 14, no. 21, Oxford University Press, 2005, pp. 3191–201, doi:10.1093/hmg/ddi350.
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2005 | Journal Article | IST-REx-ID: 8491
Schanda, Paul, et al. “SOFAST-HMQC Experiments for Recording Two-Dimensional Deteronuclear Correlation Spectra of Proteins within a Few Seconds.” Journal of Biomolecular NMR, vol. 33, no. 4, Springer Nature, 2005, pp. 199–211, doi:10.1007/s10858-005-4425-x.
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2005 | Journal Article | IST-REx-ID: 8492
Schanda, Paul, and Bernhard Brutscher. “Very Fast Two-Dimensional NMR Spectroscopy for Real-Time Investigation of Dynamic Events in Proteins on the Time Scale of Seconds.” Journal of the American Chemical Society, vol. 127, no. 22, American Chemical Society, 2005, pp. 8014–15, doi:10.1021/ja051306e.
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2005 | Journal Article | IST-REx-ID: 8516
Bourgain, Jean, and Vadim Kaloshin. “On Diffusion in High-Dimensional Hamiltonian Systems.” Journal of Functional Analysis, vol. 229, no. 1, Elsevier, 2005, pp. 1–61, doi:10.1016/j.jfa.2004.09.006.
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2005 | Journal Article | IST-REx-ID: 877
Kondrashov, Fyodor. “The Analysis of Monomer Sequences in Protein and TRNA and the Manifestation of the Compensation of Pathogenic Deviations in Their Evolution.” Biofizika, vol. 50, no. 3, Pleiades Publishing, 2005, pp. 389–95.
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2005 | Journal Article | IST-REx-ID: 878
Kondrashov, Fyodor. “In Search of the Limits of Evolution.” Nature Genetics, vol. 37, no. 1, Nature Publishing Group, 2005, pp. 9–10, doi:10.1038/ng0105-9.
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2005 | Journal Article | IST-REx-ID: 882
Kondrashov, Fyodor. “Prediction of Pathogenic Mutations in Mitochondrially Encoded Human TRNAs.” Human Molecular Genetics, vol. 14, no. 16, Oxford University Press, 2005, pp. 2415–19, doi:10.1093/hmg/ddi243.
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2005 | Journal Article | IST-REx-ID: 880
Kondrashov, Fyodor. “The Convergent Evolution of the Secondary Structure of Mitochondrial Cysteine TRNA in the Nine-Banded Armadillo Dasypus Novemcinctus.” Biofizika, vol. 50, no. 3, Pleiades Publishing, 2005, pp. 396–403.
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2005 | Journal Article | IST-REx-ID: 893
Jordan, Ingo, et al. “A Universal Trend of Amino Acid Gain and Loss in Protein Evolution.” Nature, vol. 433, no. 7026, Nature Publishing Group, 2005, pp. 633–38, doi:10.1038/nature03306.
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2005 | Journal Article | IST-REx-ID: 9529
Zilberman, Daniel, and Steven Henikoff. “Epigenetic Inheritance in Arabidopsis: Selective Silence.” Current Opinion in Genetics and Development, vol. 15, no. 5, Elsevier, 2005, pp. 557–62, doi:10.1016/j.gde.2005.07.002.
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2005 | Journal Article | IST-REx-ID: 13431
Smoukov, S. K., et al. “Cutting into Solids with Micropatterned Gels.” Advanced Materials, vol. 17, no. 11, Wiley, 2005, pp. 1361–65, doi:10.1002/adma.200402086.
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2005 | Journal Article | IST-REx-ID: 13433
Witt, Dariusz, et al. “Applications, Properties and Synthesis of w-Functionalized n-Alkanethiols and Disulfides - the Building Blocks of Self-Assembled Monolayers.” Current Organic Chemistry, vol. 8, no. 18, Bentham Science, 2005, pp. 1763–97, doi:10.2174/1385272043369421.
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2005 | Journal Article | IST-REx-ID: 13432
Campbell, Christopher J., et al. “One-Step Multilevel Microfabrication by Reaction−diffusion.” Langmuir, vol. 21, no. 1, American Chemical Society, 2005, pp. 418–23, doi:10.1021/la0487747.
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