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98 Publications


2004 | Journal Article | IST-REx-ID: 864
Panchenko, A., Kondrashov, F., & Bryant, S. (2004). Prediction of functional sites by analysis of sequence and structure conservation. Protein Science, 13(4), 884–892. https://doi.org/10.1110/ps.03465504
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2004 | Journal Article | IST-REx-ID: 870
Kondrashov, F., Ogurtsov, A., & Kondrashov, A. (2004). Bioinformatical assay of human gene morbidity. Nucleic Acids Research, 32(5), 1731–1737. https://doi.org/10.1093/nar/gkh330
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2004 | Journal Article | IST-REx-ID: 875
Kondrashov, F., & Koonin, E. (2004). A common framework for understanding the origin of genetic dominance and evolutionary fates of gene duplications. Trends in Genetics, 20(7), 287–291. https://doi.org/10.1016/j.tig.2004.05.001
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2004 | Journal Article | IST-REx-ID: 889
Kern, A., & Kondrashov, F. (2004). Mechanisms and convergence of compensatory evolution in mammalian mitochondrial tRNAs. Nature Genetics, 36(11), 1207–1212. https://doi.org/10.1038/ng1451
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2004 | Journal Article | IST-REx-ID: 898
Bazykin, G., Kondrashov, F., Ogurtsov, A., Sunyaev, S., & Kondrashov, A. (2004). Positive selection at sites of multiple amino acid replacements since rat-mouse divergence. Nature, 429(6991), 558–562. https://doi.org/10.1038/nature02601
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2004 | Journal Article | IST-REx-ID: 902
Castillo Davis, C., Kondrashov, F., Hartl, D., & Kulathinal, R. (2004). The functional genomic distribution of protein divergence in two animal phyla: Coevolution, genomic conflict, and constraint. Genome Research, 14(5), 802–811. https://doi.org/10.1101/gr.2195604
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2004 | Journal Article | IST-REx-ID: 1456 | OA
Hausel, T., Hunsicker, E., & Mazzeo, R. (2004). Hodge cohomology of gravitational instantons. Duke Mathematical Journal, 122(3), 485–548. https://doi.org/10.1215/S0012-7094-04-12233-X
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2004 | Journal Article | IST-REx-ID: 1464 | OA
Hausel, T., & Thaddeus, M. (2004). Generators for the cohomology ring of the moduli space of rank 2 higgs bundles. Proceedings of the London Mathematical Society, 88(3), 632–658. https://doi.org/10.1112/S0024611503014618
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2004 | Journal Article | IST-REx-ID: 3172
Kolmogorov, V., Nguyen, T., Nuval, A., Spincemaille, P., Prince, M., Zabih, R., & Wang, Y. (2004). Multiprocessor scheduling implementation of the simultaneous multiple volume SMV navigator method. Magnetic Resonance in Medicine, 52(2), 362–367. https://doi.org/10.1002/mrm.20162
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2004 | Journal Article | IST-REx-ID: 3173
Kolmogorov, V., & Zabih, R. (2004). What energy functions can be minimized via graph cuts? . IEEE Transactions on Pattern Analysis and Machine Intelligence, 26(2), 147–159. https://doi.org/10.1109/TPAMI.2004.1262177
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2004 | Conference Paper | IST-REx-ID: 3177
Zabih, R., & Kolmogorov, V. (2004). Spatially coherent clustering using graph cuts (Vol. 2, pp. 437–444). Presented at the CVPR: Computer Vision and Pattern Recognition, IEEE. https://doi.org/10.1109/CVPR.2004.1315196
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2004 | Journal Article | IST-REx-ID: 3178
Boykov, Y., & Kolmogorov, V. (2004). An experimental comparison of min-cut/max-flow algorithms for energy minimization in vision. IEEE Transactions on Pattern Analysis and Machine Intelligence, 26(9), 1124–1137. https://doi.org/10.1109/TPAMI.2004.60
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2004 | Conference Paper | IST-REx-ID: 3179
Rother, C., Kolmogorov, V., & Blake, A. (2004). "GrabCut" - Interactive foreground extraction using iterated graph cuts (Vol. 23, pp. 309–314). Presented at the SIGGRAPH: Special Interest Group on Computer Graphics and Interactive Techniques, ACM. https://doi.org/10.1145/1015706.1015720
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2004 | Conference Paper | IST-REx-ID: 3208
Maurer, U., & Pietrzak, K. Z. (2004). Composition of random systems: When two weak make one strong (Vol. 2951, pp. 410–427). Presented at the TCC: Theory of Cryptography Conference, Springer. https://doi.org/10.1007/978-3-540-24638-1_23
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2004 | Journal Article | IST-REx-ID: 3419
Janovjak, H. L., Struckmeier, J., Hubain, M., Kessler, M., Kedrov, A., & Mueller, D. (2004). Probing the energy landscape of the membrane protein bacteriorhodopsin. Structure, 12(5), 871–879. https://doi.org/10.1016/j.str.2004.03.016
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2004 | Journal Article | IST-REx-ID: 3420
Kedrov, A., Ziegler, C., Janovjak, H. L., Kühlbrandt, W., & Mueller, D. (2004). Controlled unfolding and refolding of a single sodium/proton antiporter using atomic force microscopy. Journal of Molecular Biology, 340(5), 1143–1152. https://doi.org/10.1016/j.jmb.2004.05.026
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2004 | Book Chapter | IST-REx-ID: 3574
Edelsbrunner, H. (2004). Biological applications of computational topology. In Handbook of Discrete and Computational Geometry (pp. 1395–1412). CRC Press.
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2004 | Book Chapter | IST-REx-ID: 3575
Edelsbrunner, H., & Harer, J. (2004). Jacobi sets of multiple Morse functions. In Foundations of Computational Mathematics (Vol. 312, pp. 37–57). Springer. https://doi.org/10.1017/CBO9781139106962.003
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2004 | Book Review | IST-REx-ID: 3595
Charlesworth, B., & Barton, N. H. (2004). Genome size: Does bigger mean worse? Current Biology. Cell Press. https://doi.org/10.1016/j.cub.2004.02.054
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2004 | Journal Article | IST-REx-ID: 3614
Barton, N. H., & Turelli, M. (2004). Effects of allele frequency changes on variance components under a general model of epistasis. Evolution; International Journal of Organic Evolution, 58(10), 2111–2132. https://doi.org/10.1111/j.0014-3820.2004.tb01591.x
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