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111 Publications


2004 | Book Chapter | IST-REx-ID: 3574
Edelsbrunner H. 2004.Biological applications of computational topology. In: Handbook of Discrete and Computational Geometry. , 1395–1412.
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2004 | Book Review | IST-REx-ID: 3595
Charlesworth B, Barton NH. 2004. Genome size: Does bigger mean worse? Current Biology. 14(6), R233–R235.
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2004 | Journal Article | IST-REx-ID: 3614
Barton NH, Turelli M. 2004. Effects of allele frequency changes on variance components under a general model of epistasis. Evolution; International Journal of Organic Evolution. 58(10), 2111–2132.
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2004 | Journal Article | IST-REx-ID: 3615
Turelli M, Barton NH. 2004. Polygenic variation maintained by balancing selection: pleiotropy, sex-dependent allelic effects and GxE interactions. Genetics. 166(2), 1053–1079.
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2004 | Journal Article | IST-REx-ID: 3807 | OA
Kampa B, Clements J, Jonas PM, Stuart G. 2004. Kinetics of Mg(2+) unblock of NMDA receptors: implications for spike-timing dependent synaptic plasticity. Journal of Physiology. 556(Pt 2), 337–45.
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2004 | Journal Article | IST-REx-ID: 3809
Schmidt Hieber C, Jonas PM, Bischofberger J. 2004. Enhanced synaptic plasticity in newly generated granule cells of the adult hippocampus. Nature. 429(6988), 184–7.
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2004 | Journal Article | IST-REx-ID: 3805
Jonas PM, Bischofberger J, Fricker D, Miles R. 2004. Interneuron Diversity series: Fast in, fast out--temporal and spatial signal processing in hippocampal interneurons. Trends in Neurosciences. 27(1), 30–40.
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2004 | Journal Article | IST-REx-ID: 3918
Heinze J, Böttcher A, Cremer S. 2004. Production of winged and wingless males in the ant, Cardiocondyla minutior. Insectes Sociaux. 51(3), 275–278.
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2004 | Conference Paper | IST-REx-ID: 3988
Choi V, Agarwal P, Edelsbrunner H, Rudolph J. 2004. Local search heuristic for rigid protein docking. WABI: 4th International Workshop on Algorithms in Bioinformatics, LNCS, vol. 3240, 218–229.
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2004 | Journal Article | IST-REx-ID: 3986
Bryant R, Edelsbrunner H, Koehl P, Levitt M. 2004. The area derivative of a space-filling diagram. Discrete & Computational Geometry. 32(3), 293–308.
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2004 | Journal Article | IST-REx-ID: 3984
Bremer P, Edelsbrunner H, Hamann B, Pascucci V. 2004. A topological hierarchy for functions on triangulated surfaces. IEEE Transactions on Visualization and Computer Graphics. 10(4), 385–396.
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2004 | Journal Article | IST-REx-ID: 3987
Natarajan V, Edelsbrunner H. 2004. Simplification of three-dimensional density maps. IEEE Transactions on Visualization and Computer Graphics. 10(5), 587–597.
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2004 | Journal Article | IST-REx-ID: 3985
Cole Mclaughlin K, Edelsbrunner H, Harer J, Natarajan V, Pascucci V. 2004. Loops in Reeb graphs of 2-manifolds. Discrete & Computational Geometry. 32(2), 231–244.
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2004 | Conference Paper | IST-REx-ID: 3989
Edelsbrunner H, Harer J, Natarajan V, Pascucci V. 2004. Local and global comparison of continuous functions. VIS: IEEE Visualization, 275–280.
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2004 | Journal Article | IST-REx-ID: 4172
Montero J, Heisenberg C-PJ. 2004. Gastrulation dynamics: cells move into focus. Trends in Cell Biology. 14(11), 620–627.
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2004 | Journal Article | IST-REx-ID: 4238
de Vladar H, González J. 2004. Dynamic response of cancer under the influence of immunological activity and therapy. Journal of Theoretical Biology. 227(3), 335–348.
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2004 | Book Chapter | IST-REx-ID: 4230
de Vladar H, Cipriani R, Scharifker B, Bubis J. 2004.A mechanism for the prebiotic emergence of proteins. In: Life in the Universe From the Miller Experiment to the Search for Life on Other Worlds. Cellular Origin and Life in Extreme Habitats and Astrobiology, , 83–87.
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2004 | Thesis | IST-REx-ID: 4236
de Vladar H. 2004. Métodos no lineales y sus aplicaciones en dinámicas aleatorias de poblaciones celulares. Centro de estudios avazados, IVIC.
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2004 | Conference Paper | IST-REx-ID: 4372
Maler O, Nickovic D. 2004. Monitoring Temporal Properties of Continuous Signals. FORMATS: Formal Modeling and Analysis of Timed Systems, LNCS, , 152–166.
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2004 | Thesis | IST-REx-ID: 4424
Jhala R. 2004. Program verification by lazy abstraction. University of California, Berkeley.
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2004 | Conference Paper | IST-REx-ID: 4445
Henzinger TA, Kirsch C. 2004. A typed assembly language for real-time programs. EMSOFT: Embedded Software , 104–113.
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2004 | Conference Paper | IST-REx-ID: 4458
Henzinger TA, Jhala R, Majumdar R, Mcmillan K. 2004. Abstractions from proofs. POPL: Principles of Programming Languages, 232–244.
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2004 | Book Chapter | IST-REx-ID: 4461
Henzinger TA, Jhala R, Majumdar R, Sanvido M. 2004.Extreme model checking. In: Verification: Theory and Practice. LNCS, vol. 2772, 332–358.
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2004 | Conference Paper | IST-REx-ID: 4459
Henzinger TA, Jhala R, Majumdar R. 2004. Race checking by context inference. PLDI: Programming Languages Design and Implementation, 1–13.
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2004 | Conference Paper | IST-REx-ID: 4525
Ghosal A, Henzinger TA, Kirsch C, Sanvido M. 2004. Event-driven programming with logical execution times. HSCC: Hybrid Systems - Computation and Control, LNCS, vol. 2993, 167–170.
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2004 | Conference Paper | IST-REx-ID: 4555
Chatterjee K, De Alfaro L, Henzinger TA. 2004. Trading memory for randomness. QEST: Quantitative Evaluation of Systems, 206–217.
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2004 | Conference Paper | IST-REx-ID: 4558
Chatterjee K, Jurdziński M, Henzinger TA. 2004. Quantitative stochastic parity games. SODA: Symposium on Discrete Algorithms, 121–130.
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2004 | Journal Article | IST-REx-ID: 4556
Chatterjee K, Ma D, Majumdar R, Zhao T, Henzinger TA, Palsberg J. 2004. Stack size analysis for interrupt-driven programs. Information and Computation. 194(2), 144–174.
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2004 | Conference Paper | IST-REx-ID: 4578
Beyer D, Chlipala A, Henzinger TA, Jhala R, Majumdar R. 2004. The BLAST query language for software verification. SAS: Static Analysis Symposium, LNCS, vol. 3148, 2–18.
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2004 | Conference Paper | IST-REx-ID: 4577
Beyer D, Henzinger TA, Jhala R, Majumdar R. 2004. An eclipse plug-in for model checking. IWPC: Program Comprehension, 251–255.
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2004 | Conference Paper | IST-REx-ID: 4581
Beyer D, Chlipala A, Henzinger TA, Jhala R, Majumdar R. 2004. Generating tests from counterexamples. ICSE: Software Engineering, 326–335.
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2004 | Conference Paper | IST-REx-ID: 4629
De Alfaro L, Faella M, Henzinger TA, Majumdar R, Stoelinga M. 2004. Model checking discounted temporal properties. TACAS: Tools and Algorithms for the Construction and Analysis of Systems, LNCS, vol. 2988, 77–92.
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2004 | Journal Article | IST-REx-ID: 6155
Cheung BH., Arellano-Carbajal F, Rybicki I, de Bono M. 2004. Soluble guanylate cyclases act in neurons exposed to the body fluid to promote C. elegans aggregation behavior. Current Biology. 14(12), 1105–1111.
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2004 | Journal Article | IST-REx-ID: 7334
Mantzaras J, Freunberger SA, Büchi FN, Roos M, Brandstätter W, Prestat M, Gauckler LJ, Andreaus B, Hajbolouri F, Senn SM, Poulikakos D, Chaniotis AK, Larrain D, Autissier N, Maréchal F. 2004. Fuel cell modeling and simulations. CHIMIA International Journal for Chemistry. 58(12), 857–868.
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2004 | Journal Article | IST-REx-ID: 7333
Santis M, Schmid D, Ruge M, Freunberger SA, Büchi FN. 2004. Modular stack-internal air humidification concept-verification in a 1 kW stack. Fuel Cells. 4(3), 214–218.
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2004 | Journal Article | IST-REx-ID: 864
Panchenko A, Kondrashov F, Bryant S. 2004. Prediction of functional sites by analysis of sequence and structure conservation. Protein Science. 13(4), 884–892.
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2004 | Journal Article | IST-REx-ID: 870
Kondrashov F, Ogurtsov A, Kondrashov A. 2004. Bioinformatical assay of human gene morbidity. Nucleic Acids Research. 32(5), 1731–1737.
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2004 | Journal Article | IST-REx-ID: 875
Kondrashov F, Koonin E. 2004. A common framework for understanding the origin of genetic dominance and evolutionary fates of gene duplications. Trends in Genetics. 20(7), 287–291.
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2004 | Journal Article | IST-REx-ID: 889
Kern A, Kondrashov F. 2004. Mechanisms and convergence of compensatory evolution in mammalian mitochondrial tRNAs. Nature Genetics. 36(11), 1207–1212.
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2004 | Journal Article | IST-REx-ID: 9493 | OA
Zilberman D, Cao X, Johansen LK, Xie Z, Carrington JC, Jacobsen SE. 2004. Role of Arabidopsis ARGONAUTE4 in RNA-directed DNA methylation triggered by inverted repeats. Current Biology. 14(13), 1214–1220.
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2004 | Journal Article | IST-REx-ID: 9517 | OA
Xie Z, Johansen LK, Gustafson AM, Kasschau KD, Lellis AD, Zilberman D, Jacobsen SE, Carrington JC. 2004. Genetic and functional diversification of small RNA pathways in plants. PLoS Biology. 2(5), 0642–0652.
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2004 | Journal Article | IST-REx-ID: 9511 | OA
Zilberman D, Henikoff S. 2004. Silencing of transposons in plant genomes: kick them when they’re down. Genome Biology. 5(12), 249.
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2004 | Journal Article | IST-REx-ID: 8517
Dolgopyat D, Kaloshin V, Koralov L. 2004. A limit shape theorem for periodic stochastic dispersion. Communications on Pure and Applied Mathematics. 57(9), 1127–1158.
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2004 | Journal Article | IST-REx-ID: 8518
Koralov L, Kaloshin V, Dolgopyat D. 2004. Sample path properties of the stochastic flows. The Annals of Probability. 32(1A), 1–27.
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2004 | Journal Article | IST-REx-ID: 898
Bazykin G, Kondrashov F, Ogurtsov A, Sunyaev S, Kondrashov A. 2004. Positive selection at sites of multiple amino acid replacements since rat-mouse divergence. Nature. 429(6991), 558–562.
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2004 | Journal Article | IST-REx-ID: 902
Castillo Davis C, Kondrashov F, Hartl D, Kulathinal R. 2004. The functional genomic distribution of protein divergence in two animal phyla: Coevolution, genomic conflict, and constraint. Genome Research. 14(5), 802–811.
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2004 | Journal Article | IST-REx-ID: 9454
Chan SW-L, Zilberman D, Xie Zhixin, Johansen Lisa K., Carrington JC, Jacobsen SE. 2004. RNA silencing genes control de novo DNA methylation. Science. 303(5662), 1336.
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2004 | Journal Article | IST-REx-ID: 12203
Liao Z, Chen M, Gong Y, Guo L, Tan Q, Feng X, Sun X, Tan F, Tang K. 2004. A new geranylgeranyl Diphosphate synthase gene from Ginkgo biloba, which intermediates the biosynthesis of the key precursor for ginkgolides. DNA Sequence. 15(2), 153–158.
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2004 | Journal Article | IST-REx-ID: 13435
Klajn R, Fialkowski M, Bensemann IT, Bitner A, Campbell CJ, Bishop K, Smoukov S, Grzybowski BA. 2004. Multicolour micropatterning of thin films of dry gels. Nature Materials. 3, 729–735.
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2004 | Journal Article | IST-REx-ID: 13434
Campbell CJ, Fialkowski M, Klajn R, Bensemann IT, Grzybowski BA. 2004. Color micro- and nanopatterning with counter-propagating reaction-diffusion fronts. Advanced Materials. 16(21), 1912–1917.
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