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98 Publications


2004 | Journal Article | IST-REx-ID: 3984
Bremer, Peer, Herbert Edelsbrunner, Bernd Hamann, and Valerio Pascucci. “A Topological Hierarchy for Functions on Triangulated Surfaces.” IEEE Transactions on Visualization and Computer Graphics. IEEE, 2004. https://doi.org/10.1109/TVCG.2004.3.
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2004 | Journal Article | IST-REx-ID: 3985
Cole Mclaughlin, Kree, Herbert Edelsbrunner, John Harer, Vijay Natarajan, and Valerio Pascucci. “Loops in Reeb Graphs of 2-Manifolds.” Discrete & Computational Geometry. Springer, 2004. https://doi.org/10.1007/s00454-004-1122-6.
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2004 | Journal Article | IST-REx-ID: 3986
Bryant, Robert, Herbert Edelsbrunner, Patrice Koehl, and Michael Levitt. “The Area Derivative of a Space-Filling Diagram.” Discrete & Computational Geometry. Springer, 2004. https://doi.org/10.1007/s00454-004-1099-1.
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2004 | Journal Article | IST-REx-ID: 3987
Natarajan, Vijay, and Herbert Edelsbrunner. “Simplification of Three-Dimensional Density Maps.” IEEE Transactions on Visualization and Computer Graphics. IEEE, 2004. https://doi.org/10.1109/TVCG.2004.32.
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2004 | Conference Paper | IST-REx-ID: 3988
Choi, Vicky, Pankaj Agarwal, Herbert Edelsbrunner, and Johannes Rudolph. “Local Search Heuristic for Rigid Protein Docking,” 3240:218–29. Springer, 2004. https://doi.org/10.1007/978-3-540-30219-3_19.
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2004 | Conference Paper | IST-REx-ID: 3989
Edelsbrunner, Herbert, John Harer, Vijay Natarajan, and Valerio Pascucci. “Local and Global Comparison of Continuous Functions,” 275–80. IEEE, 2004. https://doi.org/10.1109/VISUAL.2004.68.
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2004 | Journal Article | IST-REx-ID: 3990
Agarwal, Pankaj, Herbert Edelsbrunner, and Yusu Wang. “Computing the Writhing Number of a Polygonal Knot.” Discrete & Computational Geometry. Springer, 2004. https://doi.org/10.1007/s00454-004-2864-x.
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2004 | Journal Article | IST-REx-ID: 4172
Montero, Juan, and Carl-Philipp J Heisenberg. “Gastrulation Dynamics: Cells Move into Focus.” Trends in Cell Biology. Cell Press, 2004. https://doi.org/10.1016/j.tcb.2004.09.008.
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2004 | Journal Article | IST-REx-ID: 4224
Kruse, Karsten, Periklis Pantazis, Mark Tobias Bollenbach, Frank Julicher, and Marcos Gonzalez Gaitan. “Dpp Gradient Formation by Dynamin-Dependent Endocytosis: Receptor Trafficking and the Diffusion Model.” Development. Company of Biologists, 2004. https://doi.org/10.1242/dev.01335.
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2004 | Book Chapter | IST-REx-ID: 4230
Vladar, Harold de, Roberto Cipriani, Benjamin Scharifker, and Jose Bubis. “A Mechanism for the Prebiotic Emergence of Proteins.” In Life in the Universe From the Miller Experiment to the Search for Life on Other Worlds, edited by A. Hanslmeier, S. Kempe, and J. Seckbach, 83–87. Springer, 2004.
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2004 | Thesis | IST-REx-ID: 4236
Vladar, Harold de. “Métodos No Lineales y Sus Aplicaciones En Dinámicas Aleatorias de Poblaciones Celulares.” Centro de estudios avazados, IVIC, 2004. https://doi.org/3810.
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2004 | Journal Article | IST-REx-ID: 4238
Vladar, Harold de, and J. González. “Dynamic Response of Cancer under the Influence of Immunological Activity and Therapy.” Journal of Theoretical Biology. Elsevier, 2004. https://doi.org/3801.
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2004 | Book Chapter | IST-REx-ID: 4239
Vladar, Harold de, Roberto Cipriani, Benjamin Scharifker, and Jose Bubis. “A Mechanism for the Prebiotic Emergence of Proteins.” In Life in the Universe From the Miller Experiment to the Search for Life on Other Worlds, edited by J. Seckbach, J. Chela Flores, T. Owen, and F. Raulin, 7:83–87. Springer, 2004. https://doi.org/3807.
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2004 | Journal Article | IST-REx-ID: 4253
Barton, Nicholas H, Alison Etheridge, and Anja Sturm. “Coalescence in a Random Background.” Annals of Applied Probability. Institute of Mathematical Statistics, 2004.
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2004 | Conference Paper | IST-REx-ID: 4372
Maler, Oded, and Dejan Nickovic. “Monitoring Temporal Properties of Continuous Signals,” 152–66. Springer, 2004. https://doi.org/1572.
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2004 | Thesis | IST-REx-ID: 4424
Jhala, Ranjit. “Program Verification by Lazy Abstraction.” University of California, Berkeley, 2004.
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2004 | Conference Paper | IST-REx-ID: 4445
Henzinger, Thomas A, and Christoph Kirsch. “A Typed Assembly Language for Real-Time Programs,” 104–13. ACM, 2004. https://doi.org/10.1145/1017753.1017774.
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2004 | Conference Paper | IST-REx-ID: 4458
Henzinger, Thomas A, Ranjit Jhala, Ritankar Majumdar, and Kenneth Mcmillan. “Abstractions from Proofs,” 232–44. ACM, 2004. https://doi.org/10.1145/964001.964021.
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2004 | Conference Paper | IST-REx-ID: 4459
Henzinger, Thomas A, Ranjit Jhala, and Ritankar Majumdar. “Race Checking by Context Inference,” 1–13. ACM, 2004. https://doi.org/10.1145/996841.996844.
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2004 | Book Chapter | IST-REx-ID: 4461
Henzinger, Thomas A, Ranjit Jhala, Ritankar Majumdar, and Marco Sanvido. “Extreme Model Checking.” In Verification: Theory and Practice, 2772:332–58. Springer, 2004. https://doi.org/10.1007/978-3-540-39910-0_16.
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2004 | Conference Paper | IST-REx-ID: 4525
Ghosal, Arkadeb, Thomas A Henzinger, Christoph Kirsch, and Marco Sanvido. “Event-Driven Programming with Logical Execution Times,” 2993:167–70. Springer, 2004. https://doi.org/10.1007/978-3-540-24743-2_24.
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2004 | Conference Paper | IST-REx-ID: 4555
Chatterjee, Krishnendu, Luca De Alfaro, and Thomas A Henzinger. “Trading Memory for Randomness,” 206–17. IEEE, 2004. https://doi.org/10.1109/QEST.2004.10051.
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2004 | Journal Article | IST-REx-ID: 4556
Chatterjee, Krishnendu, Di Ma, Ritankar Majumdar, Tian Zhao, Thomas A Henzinger, and Jens Palsberg. “Stack Size Analysis for Interrupt-Driven Programs.” Information and Computation. Elsevier, 2004. https://doi.org/10.1016/j.ic.2004.06.001.
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2004 | Conference Paper | IST-REx-ID: 4558
Chatterjee, Krishnendu, Marcin Jurdziński, and Thomas A Henzinger. “Quantitative Stochastic Parity Games,” 121–30. SIAM, 2004.
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2004 | Conference Paper | IST-REx-ID: 4577
Beyer, Dirk, Thomas A Henzinger, Ranjit Jhala, and Ritankar Majumdar. “An Eclipse Plug-in for Model Checking,” 251–55. IEEE, 2004. https://doi.org/10.1109/WPC.2004.1311069  .
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2004 | Conference Paper | IST-REx-ID: 4578
Beyer, Dirk, Adam Chlipala, Thomas A Henzinger, Ranjit Jhala, and Ritankar Majumdar. “The BLAST Query Language for Software Verification,” 3148:2–18. Springer, 2004. https://doi.org/10.1007/978-3-540-27864-1_2.
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2004 | Conference Paper | IST-REx-ID: 4581
Beyer, Dirk, Adam Chlipala, Thomas A Henzinger, Ranjit Jhala, and Ritankar Majumdar. “Generating Tests from Counterexamples,” 326–35. IEEE, 2004. https://doi.org/10.1109/ICSE.2004.1317455.
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2004 | Journal Article | IST-REx-ID: 2997
Friml, Jiří, Xiong Yang, Marta Michniewicz, Dolf Weijers, Ab Quint, Olaf Tietz, René Benjamins, et al. “A PINOID-Dependent Binary Switch in Apical-Basal PIN Polar Targeting Directs Auxin Efflux.” Science. American Association for the Advancement of Science, 2004. https://doi.org/10.1126/science.1100618.
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2004 | Journal Article | IST-REx-ID: 2998
Duroux, Meg, Andreas Houben, Kamil Růžička, Jiří Friml, and Klaus Grasser. “The Chromatin Remodelling Complex FACT Associates with Actively Transcribed Regions of the Arabidopsis Genome.” Plant Journal. Wiley-Blackwell, 2004. https://doi.org/10.1111/j.1365-313X.2004.02242.x.
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2004 | Journal Article | IST-REx-ID: 2999
Sauer, Michael, and Jiří Friml. “In Vitro Culture of Arabidopsis Embryos within Their Ovules.” Plant Journal. Wiley-Blackwell, 2004. https://doi.org/10.1111/j.1365-313X.2004.02248.x.
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2004 | Book Review | IST-REx-ID: 3142
Hippenmeyer, Simon, Ina Kramer, and Silvia Arber. “Control of Neuronal Phenotype: What Targets Tell the Cell Bodies.” Trends in Neurosciences. Elsevier, 2004. https://doi.org/10.1016/j.tins.2004.05.012.
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2004 | Journal Article | IST-REx-ID: 3172
Kolmogorov, Vladimir, Thành Nguyen, Anthony Nuval, Pascal Spincemaille, Martin Prince, Ramin Zabih, and Yusu Wang. “Multiprocessor Scheduling Implementation of the Simultaneous Multiple Volume SMV Navigator Method.” Magnetic Resonance in Medicine. Wiley-Blackwell, 2004. https://doi.org/10.1002/mrm.20162.
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2004 | Journal Article | IST-REx-ID: 3173
Kolmogorov, Vladimir, and Ramin Zabih. “What Energy Functions Can Be Minimized via Graph Cuts? .” IEEE Transactions on Pattern Analysis and Machine Intelligence. IEEE, 2004. https://doi.org/10.1109/TPAMI.2004.1262177.
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2004 | Conference Paper | IST-REx-ID: 3177
Zabih, Ramin, and Vladimir Kolmogorov. “Spatially Coherent Clustering Using Graph Cuts,” 2:437–44. IEEE, 2004. https://doi.org/10.1109/CVPR.2004.1315196.
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2004 | Journal Article | IST-REx-ID: 3178
Boykov, Yuri, and Vladimir Kolmogorov. “An Experimental Comparison of Min-Cut/Max-Flow Algorithms for Energy Minimization in Vision.” IEEE Transactions on Pattern Analysis and Machine Intelligence. IEEE, 2004. https://doi.org/10.1109/TPAMI.2004.60.
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2004 | Conference Paper | IST-REx-ID: 3179
Rother, Carsten, Vladimir Kolmogorov, and Andrew Blake. “"GrabCut" - Interactive Foreground Extraction Using Iterated Graph Cuts ,” 23:309–14. ACM, 2004. https://doi.org/10.1145/1015706.1015720.
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2004 | Conference Paper | IST-REx-ID: 3208
Maurer, Ueli, and Krzysztof Z Pietrzak. “Composition of Random Systems: When Two Weak Make One Strong,” 2951:410–27. Springer, 2004. https://doi.org/10.1007/978-3-540-24638-1_23.
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2004 | Journal Article | IST-REx-ID: 3419
Janovjak, Harald L, Jens Struckmeier, Maurice Hubain, Max Kessler, Alexej Kedrov, and Daniel Mueller. “Probing the Energy Landscape of the Membrane Protein Bacteriorhodopsin.” Structure. Cell Press, 2004. https://doi.org/10.1016/j.str.2004.03.016.
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2004 | Journal Article | IST-REx-ID: 3420
Kedrov, Alexej, Christine Ziegler, Harald L Janovjak, Werner Kühlbrandt, and Daniel Mueller. “Controlled Unfolding and Refolding of a Single Sodium/Proton Antiporter Using Atomic Force Microscopy.” Journal of Molecular Biology. Elsevier, 2004. https://doi.org/10.1016/j.jmb.2004.05.026.
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2004 | Book Chapter | IST-REx-ID: 3574
Edelsbrunner, Herbert. “Biological Applications of Computational Topology.” In Handbook of Discrete and Computational Geometry, 1395–1412. CRC Press, 2004.
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2004 | Book Chapter | IST-REx-ID: 3575
Edelsbrunner, Herbert, and John Harer. “Jacobi Sets of Multiple Morse Functions.” In Foundations of Computational Mathematics, 312:37–57. Springer, 2004. https://doi.org/10.1017/CBO9781139106962.003.
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2004 | Book Chapter | IST-REx-ID: 3587
Ulrich, Florian, and Carl-Philipp J Heisenberg. “Gastrulation in Zebrafish.” In Fish Development and Genetics : The Zebrafish and Medaka Models, edited by Vladimir Korzh and Zhiyuan Gong, 2:39–86. World Scientific Publishing, 2004.
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2004 | Book Review | IST-REx-ID: 3595
Charlesworth, Brian, and Nicholas H Barton. “Genome Size: Does Bigger Mean Worse?” Current Biology. Cell Press, 2004. https://doi.org/10.1016/j.cub.2004.02.054.
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2004 | Journal Article | IST-REx-ID: 3614
Barton, Nicholas H, and Michael Turelli. “Effects of Allele Frequency Changes on Variance Components under a General Model of Epistasis.” Evolution; International Journal of Organic Evolution. Wiley-Blackwell, 2004. https://doi.org/10.1111/j.0014-3820.2004.tb01591.x.
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2004 | Journal Article | IST-REx-ID: 3615
Turelli, Michael, and Nicholas H Barton. “Polygenic Variation Maintained by Balancing Selection: Pleiotropy, Sex-Dependent Allelic Effects and GxE Interactions.” Genetics. Genetics Society of America, 2004. https://doi.org/10.1534/genetics.166.2.1053.
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2004 | Book Review | IST-REx-ID: 3616
Barton, Nicholas H. “Speciation: Why, How, Where and When?” Current Biology. Cell Press, 2004. https://doi.org/10.1016/j.cub.2004.07.037.
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2004 | Journal Article | IST-REx-ID: 3617
Barton, Nicholas H, and Alison Etheridge. “The Effect of Selection on Genealogies.” Genetics. Genetics Society of America, 2004. https://doi.org/10.1534/genetics.166.2.1115.
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2004 | Conference Paper | IST-REx-ID: 3688
Ulges, Adrian, Christoph Lampert, and Thomas Breuel. “Document Capture Using Stereo Vision,” 198–200. ACM, 2004. https://doi.org/10.1145/1030397.1030434.
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